Wall clock time and date at job start Tue Mar 31 2020 07:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.79474 * 2 1 4 4 C 1.54593 * 110.57835 * 123.29472 * 2 1 3 5 5 N 1.48116 * 103.42143 * 81.17046 * 4 2 1 6 6 C 1.34775 * 127.03668 * 219.28455 * 5 4 2 7 7 O 1.21282 * 120.00577 * 179.68534 * 6 5 4 8 8 C 1.50703 * 119.99768 * 359.69117 * 6 5 4 9 9 S 1.81000 * 109.47038 * 179.97438 * 8 6 5 10 10 C 1.76199 * 99.99871 * 179.97438 * 9 8 6 11 11 H 1.08004 * 120.00439 * 359.97438 * 10 9 8 12 12 C 1.38803 * 119.99949 * 180.02562 * 10 9 8 13 13 N 1.31625 * 120.00229 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99759 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46845 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47399 * 299.99573 * 14 12 10 17 17 H 1.48498 * 109.47295 * 60.00179 * 14 12 10 18 18 C 1.47490 * 105.93488 * 39.02536 * 5 4 2 19 19 C 1.54009 * 107.07970 * 334.77960 * 18 5 4 20 20 H 1.09003 * 110.32648 * 120.19574 * 19 18 5 21 21 C 1.52994 * 110.32318 * 242.41081 * 19 18 5 22 22 N 1.46498 * 109.47525 * 293.54696 * 21 19 18 23 23 C 1.34776 * 120.00303 * 180.02562 * 22 21 19 24 24 O 1.21346 * 120.00187 * 359.97438 * 23 22 21 25 25 C 1.49448 * 119.99923 * 179.97438 * 23 22 21 26 26 N 1.34777 * 120.00007 * 179.97438 * 25 23 22 27 27 O 1.21349 * 120.00336 * 359.97438 * 25 23 22 28 28 H 1.09008 * 109.46709 * 183.28909 * 1 2 3 29 29 H 1.09001 * 109.47271 * 303.28901 * 1 2 3 30 30 H 1.08995 * 109.47088 * 63.29093 * 1 2 3 31 31 H 1.08994 * 110.61889 * 322.66009 * 4 2 1 32 32 H 1.08994 * 110.54648 * 199.65187 * 4 2 1 33 33 H 1.09000 * 109.47235 * 59.99532 * 8 6 5 34 34 H 1.09005 * 109.46867 * 299.99572 * 8 6 5 35 35 H 0.97000 * 120.00071 * 359.97438 * 13 12 10 36 36 H 1.08997 * 109.91164 * 94.13618 * 18 5 4 37 37 H 1.08992 * 109.91732 * 215.22501 * 18 5 4 38 38 H 1.09007 * 109.47360 * 53.54908 * 21 19 18 39 39 H 1.09008 * 109.47102 * 173.54730 * 21 19 18 40 40 H 0.97007 * 119.99487 * 0.02562 * 22 21 19 41 41 H 0.96998 * 119.99959 * 0.02562 * 26 25 23 42 42 H 0.96998 * 120.00245 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0190 0.0000 4 6 2.0734 -0.7945 1.2097 5 7 1.9872 -2.2038 0.7622 6 6 1.6223 -3.2696 1.5021 7 8 1.5905 -4.3736 1.0009 8 6 1.2534 -3.0895 2.9521 9 16 0.8126 -4.6932 3.6662 10 6 0.4378 -4.2009 5.3160 11 1 0.5196 -3.1625 5.6015 12 6 0.0385 -5.1478 6.2490 13 7 -0.0607 -6.4134 5.9013 14 14 -0.3595 -4.6257 7.9979 15 1 -0.7573 -5.8162 8.7914 16 1 0.8386 -3.9996 8.6124 17 1 -1.4758 -3.6464 7.9802 18 6 2.3763 -2.2014 -0.6604 19 6 2.0775 -0.7936 -1.2087 20 1 2.9910 -0.3312 -1.5829 21 6 1.0253 -0.8672 -2.3169 22 7 1.5802 -1.5793 -3.4707 23 6 0.8278 -1.7654 -4.5734 24 8 -0.3093 -1.3436 -4.6103 25 6 1.3941 -2.4914 -5.7506 26 7 0.6416 -2.6780 -6.8530 27 8 2.5314 -2.9129 -5.7139 28 1 -0.3633 -1.0261 0.0590 29 1 -0.3634 0.5640 0.8590 30 1 -0.3633 0.4619 -0.9180 31 1 1.4490 -0.6310 2.0880 32 1 3.1077 -0.5187 1.4151 33 1 0.4033 -2.4117 3.0293 34 1 2.1020 -2.6712 3.4936 35 1 0.1449 -6.6843 4.9929 36 1 3.4403 -2.4184 -0.7546 37 1 1.7961 -2.9460 -1.2053 38 1 0.1474 -1.3989 -1.9497 39 1 0.7406 0.1418 -2.6153 40 1 2.4891 -1.9169 -3.4410 41 1 -0.2674 -2.3407 -6.8825 42 1 1.0092 -3.1488 -7.6172 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052049078.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:03 Heat of formation + Delta-G solvation = -112.458593 kcal Electronic energy + Delta-G solvation = -25507.238370 eV Core-core repulsion = 21613.286452 eV Total energy + Delta-G solvation = -3893.951918 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 10.62 seconds Orbital eigenvalues (eV) -41.06097 -40.24157 -38.77297 -37.90078 -35.52746 -34.02478 -32.86295 -32.54070 -30.85943 -29.37575 -27.05252 -26.50402 -24.90809 -24.44909 -22.69732 -20.95936 -19.96128 -19.47688 -18.88771 -18.22754 -17.63697 -17.00900 -16.75859 -16.43626 -16.13205 -15.86453 -15.34205 -14.89161 -14.43307 -14.34566 -14.30212 -13.86020 -13.76590 -13.62927 -13.16419 -12.96580 -12.71214 -12.44192 -12.34289 -12.16772 -12.05395 -11.90192 -11.85003 -11.26654 -11.09462 -10.96825 -10.92900 -10.35706 -10.18505 -10.11797 -9.64542 -9.59322 -9.55126 -9.02968 -8.67452 -8.23979 -6.69313 -6.63427 -4.01686 1.00143 2.05891 2.73963 2.80705 2.92249 3.31218 3.36814 3.40761 3.43865 3.56888 4.04775 4.11698 4.17875 4.22248 4.25560 4.79513 4.81272 4.89172 4.92312 5.11870 5.21056 5.22839 5.30073 5.34831 5.38783 5.52084 5.59545 5.61682 5.69610 5.72847 5.75243 5.83890 5.97146 6.01322 6.04001 6.26843 6.43727 6.84434 7.35101 7.55934 7.57867 7.89911 8.42026 8.48613 9.25700 10.80440 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.020670 B = 0.002356 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.287932 B =11883.963215 C =12489.316477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.094 4.094 3 H 0.094 0.906 4 C 0.102 3.898 5 N -0.625 5.625 6 C 0.550 3.450 7 O -0.515 6.515 8 C -0.123 4.123 9 S -0.116 6.116 10 C -0.607 4.607 11 H 0.066 0.934 12 C 0.035 3.965 13 N -0.883 5.883 14 Si 1.084 2.916 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.285 1.285 18 C 0.107 3.893 19 C -0.112 4.112 20 H 0.096 0.904 21 C 0.124 3.876 22 N -0.698 5.698 23 C 0.506 3.494 24 O -0.519 6.519 25 C 0.514 3.486 26 N -0.822 5.822 27 O -0.520 6.520 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.278 0.722 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.414 0.586 41 H 0.414 0.586 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.764 17.375 -21.482 27.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.114 4.114 3 H 0.113 0.887 4 C -0.021 4.021 5 N -0.362 5.362 6 C 0.339 3.661 7 O -0.389 6.389 8 C -0.274 4.274 9 S 0.110 5.890 10 C -0.755 4.755 11 H 0.084 0.916 12 C -0.175 4.175 13 N -0.517 5.517 14 Si 0.910 3.090 15 H -0.203 1.203 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.016 4.016 19 C -0.132 4.132 20 H 0.114 0.886 21 C 0.001 3.999 22 N -0.352 5.352 23 C 0.286 3.714 24 O -0.395 6.395 25 C 0.292 3.708 26 N -0.388 5.388 27 O -0.395 6.395 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.250 0.750 41 H 0.245 0.755 42 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 3.122 15.136 -20.506 25.677 hybrid contribution 0.730 1.872 -1.161 2.320 sum 3.851 17.008 -21.666 27.812 Atomic orbital electron populations 1.21917 0.93857 1.02873 1.02371 1.22194 0.96925 0.99020 0.93249 0.88732 1.22555 1.01370 0.80578 0.97603 1.48735 1.69157 1.07523 1.10812 1.19993 0.75732 0.82760 0.87624 1.90722 1.51568 1.23895 1.72721 1.23281 1.04330 1.06104 0.93724 1.84852 1.88079 1.05420 1.10658 1.23683 1.57512 0.98812 0.95489 0.91620 1.26062 0.93450 0.93022 1.05014 1.70797 1.42741 1.16156 1.22046 0.83331 0.76576 0.75705 0.73393 1.20265 1.21128 1.21118 1.22038 1.00512 0.96346 0.82752 1.22429 0.99085 0.96541 0.95130 0.88599 1.21761 0.96825 0.97485 0.83827 1.45841 1.18123 1.56732 1.14470 1.20029 0.86050 0.81086 0.84250 1.90787 1.17550 1.49162 1.81960 1.20126 0.85810 0.80292 0.84532 1.43523 1.18850 1.59603 1.16867 1.90838 1.17831 1.48993 1.81882 0.91935 0.91874 0.91847 0.89451 0.90696 0.89030 0.89033 0.90976 0.91394 0.90291 0.89864 0.90153 0.74979 0.75506 0.75601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 7.97 37.16 0.30 -0.92 16 2 C -0.09 -0.65 3.60 -88.93 -0.32 -0.97 16 3 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 4 C 0.10 0.96 6.37 -2.32 -0.01 0.95 16 5 N -0.62 -8.42 3.19 -169.98 -0.54 -8.97 16 6 C 0.55 10.43 7.91 -10.98 -0.09 10.34 16 7 O -0.52 -11.89 16.20 5.56 0.09 -11.80 16 8 C -0.12 -2.51 5.09 36.01 0.18 -2.32 16 9 S -0.12 -3.15 19.60 -107.50 -2.11 -5.26 16 10 C -0.61 -17.46 9.50 30.94 0.29 -17.17 16 11 H 0.07 1.80 7.80 -52.48 -0.41 1.39 16 12 C 0.04 1.02 5.49 -17.43 -0.10 0.93 16 13 N -0.88 -27.56 13.67 55.49 0.76 -26.80 16 14 Si 1.08 24.86 29.92 -169.99 -5.09 19.78 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 C 0.11 1.15 6.31 -2.97 -0.02 1.13 16 19 C -0.11 -0.79 3.00 -89.25 -0.27 -1.05 16 20 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 21 C 0.12 0.97 3.59 -4.05 -0.01 0.95 16 22 N -0.70 -5.75 5.28 -60.73 -0.32 -6.07 16 23 C 0.51 4.86 7.89 -11.59 -0.09 4.76 16 24 O -0.52 -6.00 16.48 5.50 0.09 -5.91 16 25 C 0.51 4.56 8.16 -11.59 -0.09 4.46 16 26 N -0.82 -4.42 8.87 30.90 0.27 -4.15 16 27 O -0.52 -5.95 17.31 5.50 0.10 -5.86 16 28 H 0.06 0.66 7.61 -51.92 -0.40 0.26 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.44 6.67 -51.93 -0.35 0.09 16 31 H 0.09 0.84 7.13 -51.93 -0.37 0.47 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.09 1.73 7.90 -51.92 -0.41 1.32 16 34 H 0.09 1.74 8.14 -51.91 -0.42 1.31 16 35 H 0.28 8.86 7.13 -40.82 -0.29 8.57 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.00 7.49 -51.93 -0.39 0.61 16 38 H 0.08 0.82 6.85 -51.93 -0.36 0.46 16 39 H 0.08 0.57 7.55 -51.92 -0.39 0.17 16 40 H 0.41 3.04 7.79 -40.82 -0.32 2.72 16 41 H 0.41 1.70 8.30 -40.82 -0.34 1.36 16 42 H 0.41 1.42 8.93 -40.82 -0.36 1.06 16 LS Contribution 366.70 15.07 5.53 5.53 Total: -1.00 -38.39 366.70 -7.16 -45.55 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.71 Total: 2.88 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -0.23 Total: 1.09 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.17 Total: -45.99 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: 0.28 Total: -23.57 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.09 Total: 19.78 kcal Atomic # 16 Polarization: -3.15 SS G_CDS: -2.11 Total: -5.26 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.39 -7.16 -45.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052049078.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.908 kcal (2) G-P(sol) polarization free energy of solvation -38.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.63 seconds