Wall clock time and date at job start Tue Mar 31 2020 07:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 110.65237 * 2 1 4 4 C 1.54942 * 110.89505 * 236.69456 * 2 1 3 5 5 N 1.48113 * 103.25098 * 204.21424 * 4 2 1 6 6 C 1.34781 * 127.02791 * 219.55349 * 5 4 2 7 7 O 1.21288 * 119.99677 * 179.68848 * 6 5 4 8 8 C 1.50699 * 120.00343 * 359.68155 * 6 5 4 9 9 S 1.80993 * 109.47142 * 179.97438 * 8 6 5 10 10 C 1.76198 * 99.99928 * 180.02562 * 9 8 6 11 11 H 1.07995 * 120.00168 * 359.97438 * 10 9 8 12 12 C 1.38799 * 120.00017 * 180.02562 * 10 9 8 13 13 N 1.31633 * 120.00209 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00171 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46973 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47198 * 119.99778 * 14 12 10 17 17 H 1.48493 * 109.47395 * 240.00116 * 14 12 10 18 18 C 1.47486 * 105.93573 * 39.29221 * 5 4 2 19 19 C 1.54003 * 107.08454 * 334.55302 * 18 5 4 20 20 H 1.08993 * 110.32784 * 120.19822 * 19 18 5 21 21 C 1.53001 * 110.32182 * 242.31216 * 19 18 5 22 22 N 1.46494 * 109.47490 * 293.54027 * 21 19 18 23 23 C 1.34778 * 120.00383 * 180.02562 * 22 21 19 24 24 O 1.21342 * 119.99823 * 0.02562 * 23 22 21 25 25 C 1.49445 * 120.00045 * 180.02562 * 23 22 21 26 26 N 1.34778 * 120.00045 * 180.02562 * 25 23 22 27 27 O 1.21351 * 119.99996 * 359.97438 * 25 23 22 28 28 H 1.09006 * 109.46934 * 296.81404 * 1 2 3 29 29 H 1.08998 * 109.47022 * 56.80917 * 1 2 3 30 30 H 1.08993 * 109.46865 * 176.81888 * 1 2 3 31 31 H 1.08997 * 110.66229 * 85.77224 * 4 2 1 32 32 H 1.08998 * 110.65593 * 322.65752 * 4 2 1 33 33 H 1.09001 * 109.47046 * 300.00464 * 8 6 5 34 34 H 1.09008 * 109.46600 * 60.00211 * 8 6 5 35 35 H 0.96997 * 120.00213 * 180.02562 * 13 12 10 36 36 H 1.08999 * 109.91088 * 93.91448 * 18 5 4 37 37 H 1.08998 * 109.91112 * 215.18998 * 18 5 4 38 38 H 1.08998 * 109.47318 * 53.54622 * 21 19 18 39 39 H 1.09010 * 109.46802 * 173.54224 * 21 19 18 40 40 H 0.97000 * 119.99385 * 0.02562 * 22 21 19 41 41 H 0.96991 * 120.00062 * 0.02562 * 26 25 23 42 42 H 0.97004 * 120.00155 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9145 1.0200 0.0000 4 6 2.0827 -0.7948 -1.2098 5 7 3.4321 -1.2057 -0.7582 6 6 4.5602 -1.2366 -1.4952 7 8 5.6045 -1.5919 -0.9909 8 6 4.5240 -0.8298 -2.9458 9 16 6.1825 -0.9773 -3.6554 10 6 5.8566 -0.4547 -5.3062 11 1 4.8559 -0.1686 -5.5944 12 6 6.8858 -0.4117 -6.2365 13 7 8.1052 -0.7619 -5.8856 14 14 6.5402 0.1417 -7.9869 15 1 5.1004 0.4783 -8.1244 16 1 7.3601 1.3400 -8.2982 17 1 6.8854 -0.9527 -8.9293 18 6 3.2903 -1.5680 0.6644 19 6 2.0775 -0.7915 1.2102 20 1 1.3221 -1.4828 1.5836 21 6 2.5154 0.1661 2.3202 22 7 2.9826 -0.6053 3.4747 23 6 3.4197 0.0319 4.5789 24 8 3.4260 1.2447 4.6170 25 6 3.8968 -0.7551 5.7563 26 7 4.3335 -0.1179 6.8607 27 8 3.8901 -1.9680 5.7183 28 1 -0.3633 0.4636 0.9172 29 1 -0.3633 0.5626 -0.8600 30 1 -0.3633 -1.0260 -0.0570 31 1 2.1496 -0.1568 -2.0910 32 1 1.4623 -1.6679 -1.4120 33 1 3.8371 -1.4794 -3.4883 34 1 4.1859 0.2035 -3.0250 35 1 8.8246 -0.7315 -6.5356 36 1 3.1179 -2.6401 0.7590 37 1 4.1895 -1.2842 1.2111 38 1 3.3238 0.7998 1.9555 39 1 1.6713 0.7888 2.6169 40 1 2.9772 -1.5748 3.4443 41 1 4.3378 0.8515 6.8915 42 1 4.6428 -0.6287 7.6251 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052049080.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:20 Heat of formation + Delta-G solvation = -110.996387 kcal Electronic energy + Delta-G solvation = -25236.562227 eV Core-core repulsion = 21342.673715 eV Total energy + Delta-G solvation = -3893.888512 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.99345 -40.06734 -38.73526 -37.77052 -35.50580 -33.99120 -32.94046 -32.43713 -31.00633 -29.28273 -26.69056 -26.42195 -25.48813 -24.59800 -22.22542 -21.06483 -20.26040 -19.38491 -19.03657 -17.68820 -17.63144 -16.79473 -16.47616 -16.38584 -16.03124 -15.68689 -15.28995 -14.82022 -14.81266 -14.51720 -14.18910 -14.03368 -13.73532 -13.45700 -13.24767 -13.11653 -12.61757 -12.36127 -12.22228 -12.20355 -12.10579 -11.75071 -11.27812 -11.17172 -11.07980 -11.02539 -10.98396 -10.76338 -10.33435 -10.08526 -9.81713 -9.63286 -9.43834 -9.08431 -8.60836 -8.24078 -6.51528 -6.22647 -3.93468 1.02608 2.08191 2.82672 2.85981 3.02706 3.20897 3.25023 3.30332 3.44066 3.58539 4.10087 4.17468 4.19543 4.20547 4.26673 4.77441 4.88923 4.94693 5.03600 5.12351 5.12608 5.27624 5.31028 5.33036 5.50180 5.54555 5.60462 5.66890 5.70809 5.78926 5.82636 5.88712 5.96782 6.03930 6.10963 6.33635 6.46102 6.87053 7.37526 7.58752 7.60272 7.65166 8.34396 8.52653 9.22666 10.84847 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.017938 B = 0.002353 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.521621 B =11898.299478 C =12838.222265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.089 0.911 4 C 0.105 3.895 5 N -0.628 5.628 6 C 0.551 3.449 7 O -0.514 6.514 8 C -0.146 4.146 9 S -0.061 6.061 10 C -0.534 4.534 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.107 3.893 19 C -0.113 4.113 20 H 0.096 0.904 21 C 0.126 3.874 22 N -0.697 5.697 23 C 0.506 3.494 24 O -0.519 6.519 25 C 0.514 3.486 26 N -0.822 5.822 27 O -0.520 6.520 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.268 0.732 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.414 0.586 41 H 0.414 0.586 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.568 2.066 21.086 27.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.108 0.892 4 C -0.019 4.019 5 N -0.366 5.366 6 C 0.340 3.660 7 O -0.388 6.388 8 C -0.297 4.297 9 S 0.166 5.834 10 C -0.682 4.682 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.502 5.502 14 Si 0.746 3.254 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.017 4.017 19 C -0.132 4.132 20 H 0.114 0.886 21 C 0.003 3.997 22 N -0.351 5.351 23 C 0.286 3.714 24 O -0.395 6.395 25 C 0.293 3.707 26 N -0.389 5.389 27 O -0.395 6.395 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.251 0.749 41 H 0.245 0.755 42 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -15.779 1.605 21.519 26.732 hybrid contribution -1.274 0.559 -1.350 1.938 sum -17.053 2.164 20.169 26.500 Atomic orbital electron populations 1.21762 0.93418 1.02398 1.02408 1.22284 0.96247 0.99879 0.93325 0.89241 1.22601 0.83232 0.98616 0.97433 1.48784 1.08428 1.68548 1.10804 1.20045 0.81499 0.76738 0.87704 1.90722 1.29382 1.46079 1.72593 1.23500 1.08287 1.04040 0.93833 1.85433 1.01464 1.87679 1.08856 1.22889 0.97936 1.51818 0.95593 0.90867 1.25003 0.94440 0.94906 0.99289 1.70028 1.00205 1.44900 1.35116 0.86109 0.78467 0.78383 0.82485 1.19611 1.20557 1.20557 1.22038 0.97969 0.98776 0.82895 1.22483 0.97996 0.97687 0.95038 0.88594 1.21622 1.00329 0.93822 0.83946 1.45797 1.63202 1.11773 1.14280 1.20030 0.79297 0.87822 0.84262 1.90787 1.53350 1.13319 1.82011 1.20123 0.78406 0.87680 0.84534 1.43522 1.65910 1.12689 1.16736 1.90839 1.53268 1.13476 1.81943 0.92119 0.91854 0.92137 0.89515 0.90741 0.89263 0.89273 0.92216 0.91438 0.90276 0.90206 0.90258 0.74909 0.75512 0.75609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 9.17 37.16 0.34 -0.40 16 2 C -0.10 -0.70 3.20 -88.74 -0.28 -0.99 16 3 H 0.09 0.69 7.87 -51.93 -0.41 0.28 16 4 C 0.10 1.01 6.40 -2.13 -0.01 1.00 16 5 N -0.63 -8.67 3.29 -169.77 -0.56 -9.23 16 6 C 0.55 10.58 7.91 -10.98 -0.09 10.50 16 7 O -0.51 -12.01 16.20 5.55 0.09 -11.92 16 8 C -0.15 -2.97 5.09 36.01 0.18 -2.79 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.53 -15.18 9.50 30.94 0.29 -14.89 16 11 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 13 N -0.87 -26.20 13.22 55.49 0.73 -25.46 16 14 Si 0.92 21.36 29.55 -169.99 -5.02 16.33 16 15 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 C 0.11 1.17 6.31 -2.98 -0.02 1.15 16 19 C -0.11 -0.81 2.64 -89.24 -0.24 -1.05 16 20 H 0.10 0.52 7.85 -51.93 -0.41 0.11 16 21 C 0.13 1.00 4.76 -4.04 -0.02 0.98 16 22 N -0.70 -5.81 5.28 -60.73 -0.32 -6.13 16 23 C 0.51 4.91 7.89 -11.59 -0.09 4.81 16 24 O -0.52 -6.08 16.48 5.50 0.09 -5.99 16 25 C 0.51 4.60 8.16 -11.59 -0.09 4.50 16 26 N -0.82 -4.48 8.87 30.90 0.27 -4.21 16 27 O -0.52 -5.98 17.31 5.50 0.10 -5.89 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.29 8.11 -51.93 -0.42 -0.13 16 31 H 0.09 0.85 7.23 -51.93 -0.38 0.47 16 32 H 0.07 0.62 8.03 -51.93 -0.42 0.21 16 33 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 34 H 0.09 1.67 7.90 -51.91 -0.41 1.26 16 35 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 1.02 7.48 -51.93 -0.39 0.63 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 40 H 0.41 3.08 7.79 -40.82 -0.32 2.76 16 41 H 0.41 1.74 8.30 -40.82 -0.34 1.40 16 42 H 0.41 1.45 8.93 -40.82 -0.36 1.08 16 LS Contribution 373.06 15.07 5.62 5.62 Total: -1.00 -37.78 373.06 -7.26 -45.04 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -5.93 Total: 0.89 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -0.12 Total: 4.81 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.13 Total: -45.03 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: 0.28 Total: -23.79 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.78 -7.26 -45.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052049080.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.955 kcal (2) G-P(sol) polarization free energy of solvation -37.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds