Wall clock time and date at job start Tue Mar 31 2020 06:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48500 * 109.46975 * 240.00198 * 3 2 1 5 5 H 1.48494 * 109.46964 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47208 * 119.99688 * 3 2 1 7 7 C 1.38798 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99872 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00331 * 0.02562 * 7 2 1 10 10 C 1.80993 * 100.00132 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.46992 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00059 * 0.02562 * 11 10 9 13 13 N 1.34771 * 119.99988 * 179.97438 * 11 10 9 14 14 C 1.47026 * 125.65100 * 0.02691 * 13 11 10 15 15 C 1.54316 * 107.27365 * 180.79395 * 14 13 11 16 16 C 1.55160 * 102.94268 * 22.19228 * 15 14 13 17 17 H 1.08999 * 111.00447 * 82.61518 * 16 15 14 18 18 C 1.53009 * 111.00399 * 206.42607 * 16 15 14 19 19 C 1.52989 * 109.46967 * 184.99880 * 18 16 15 20 20 N 1.46502 * 109.47119 * 180.02562 * 19 18 16 21 21 C 1.34776 * 120.00127 * 180.02562 * 20 19 18 22 22 O 1.21348 * 120.00173 * 359.97438 * 21 20 19 23 23 C 1.49455 * 119.99987 * 179.97438 * 21 20 19 24 24 N 1.34780 * 120.00076 * 179.97438 * 23 21 20 25 25 O 1.21341 * 120.00043 * 359.97438 * 23 21 20 26 26 C 1.47425 * 125.64767 * 179.71693 * 13 11 10 27 27 H 0.97001 * 120.00554 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.47192 * 60.00293 * 10 9 7 29 29 H 1.09000 * 109.47369 * 299.99706 * 10 9 7 30 30 H 1.09004 * 109.87531 * 300.21113 * 14 13 11 31 31 H 1.09000 * 109.87938 * 61.37366 * 14 13 11 32 32 H 1.08997 * 110.72381 * 140.55486 * 15 14 13 33 33 H 1.09003 * 110.72277 * 263.65209 * 15 14 13 34 34 H 1.08996 * 109.46874 * 305.00213 * 18 16 15 35 35 H 1.09003 * 109.47050 * 64.99678 * 18 16 15 36 36 H 1.08996 * 109.47596 * 299.99892 * 19 18 16 37 37 H 1.09003 * 109.47400 * 60.00012 * 19 18 16 38 38 H 0.96994 * 119.99879 * 359.97438 * 20 19 18 39 39 H 0.97001 * 119.99918 * 0.02562 * 24 23 21 40 40 H 0.97000 * 119.99808 * 179.97438 * 24 23 21 41 41 H 1.09001 * 110.36478 * 274.97629 * 26 13 11 42 42 H 1.08998 * 110.36859 * 37.30006 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7912 -5.5023 0.0011 13 7 2.8443 -6.3430 0.0008 14 6 4.3112 -6.2450 0.0003 15 6 4.8667 -7.6846 -0.0205 16 6 3.6847 -8.5048 -0.6017 17 1 3.6703 -8.4518 -1.6903 18 6 3.7400 -9.9583 -0.1270 19 6 2.6359 -10.7622 -0.8165 20 7 2.6884 -12.1539 -0.3616 21 6 1.8047 -13.0526 -0.8388 22 8 0.9652 -12.7091 -1.6449 23 6 1.8587 -14.4724 -0.3751 24 7 0.9746 -15.3711 -0.8519 25 8 2.6984 -14.8160 0.4306 26 6 2.4657 -7.7679 0.0072 27 1 -0.4851 0.8400 0.0004 28 1 3.1245 -3.7313 0.8905 29 1 3.1245 -3.7313 -0.8895 30 1 4.6463 -5.7056 -0.8857 31 1 4.6486 -5.7304 0.9000 32 1 5.7391 -7.7521 -0.6703 33 1 5.1119 -8.0180 0.9879 34 1 4.7110 -10.3856 -0.3773 35 1 3.5950 -9.9937 0.9528 36 1 1.6649 -10.3350 -0.5661 37 1 2.7809 -10.7269 -1.8962 38 1 3.3596 -12.4285 0.2825 39 1 0.3036 -15.0965 -1.4963 40 1 1.0099 -16.2927 -0.5512 41 1 2.2873 -8.1083 1.0272 42 1 1.5799 -7.9278 -0.6075 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001059198591.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:48 Heat of formation + Delta-G solvation = -115.010179 kcal Electronic energy + Delta-G solvation = -24458.867849 eV Core-core repulsion = 20564.805286 eV Total energy + Delta-G solvation = -3894.062563 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 10.80 seconds Orbital eigenvalues (eV) -41.00973 -39.92815 -38.86326 -37.64888 -35.98057 -34.20217 -33.07481 -32.42653 -30.39614 -29.60758 -27.78782 -25.66617 -25.35032 -23.80438 -22.38913 -21.20092 -20.43528 -19.34725 -19.12683 -17.79230 -17.63031 -16.74179 -16.63615 -16.47457 -16.20888 -15.78691 -15.43713 -14.86454 -14.79632 -14.44143 -14.37758 -13.97667 -13.89539 -13.59823 -13.22410 -12.85252 -12.61110 -12.57496 -12.37659 -12.21623 -11.90501 -11.77775 -11.43187 -11.05713 -11.04027 -10.99860 -10.97626 -10.76436 -10.43744 -10.18152 -9.82241 -9.70260 -9.41242 -9.05670 -8.51059 -8.23461 -6.50070 -6.21064 -3.91996 0.92986 1.99384 2.73323 2.91306 3.06347 3.23590 3.25846 3.29315 3.36492 3.61951 4.04226 4.07795 4.20828 4.31888 4.34710 4.67076 4.73529 4.97745 5.05214 5.06967 5.13846 5.15144 5.28507 5.44055 5.49521 5.52932 5.58345 5.63440 5.71838 5.74221 5.80075 5.93908 5.94466 5.96721 6.14051 6.36918 6.42050 6.78554 7.28845 7.51064 7.59315 7.66702 8.35262 8.55770 9.23861 10.86308 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.032229 B = 0.001775 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.565719 B =15773.654517 C =16445.145830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.147 4.147 11 C 0.548 3.452 12 O -0.515 6.515 13 N -0.627 5.627 14 C 0.101 3.899 15 C -0.124 4.124 16 C -0.099 4.099 17 H 0.091 0.909 18 C -0.120 4.120 19 C 0.112 3.888 20 N -0.698 5.698 21 C 0.503 3.497 22 O -0.516 6.516 23 C 0.515 3.485 24 N -0.822 5.822 25 O -0.524 6.524 26 C 0.110 3.890 27 H 0.269 0.731 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.413 0.587 39 H 0.415 0.585 40 H 0.412 0.588 41 H 0.066 0.934 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.722 -28.370 -1.291 30.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.297 4.297 11 C 0.336 3.664 12 O -0.389 6.389 13 N -0.365 5.365 14 C -0.022 4.022 15 C -0.162 4.162 16 C -0.119 4.119 17 H 0.109 0.891 18 C -0.158 4.158 19 C -0.011 4.011 20 N -0.351 5.351 21 C 0.283 3.717 22 O -0.391 6.391 23 C 0.293 3.707 24 N -0.388 5.388 25 O -0.399 6.399 26 C -0.013 4.013 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.249 0.751 39 H 0.246 0.754 40 H 0.244 0.756 41 H 0.084 0.916 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.699 -28.236 -1.357 29.577 hybrid contribution 2.030 0.901 0.125 2.225 sum 10.730 -27.335 -1.232 29.392 Atomic orbital electron populations 1.70006 1.05952 1.27574 1.46725 1.24989 0.95025 0.99004 0.94521 0.86223 0.79237 0.81243 0.78786 1.19944 1.20798 1.19941 1.22819 0.94860 0.91633 1.59122 0.90986 1.85405 1.04961 0.96324 1.96719 1.23506 1.06443 0.94998 1.04770 1.20034 0.85683 0.85494 0.75144 1.90713 1.14945 1.85137 1.48152 1.48494 1.06518 1.05673 1.75809 1.21994 0.80566 0.97452 1.02225 1.22680 0.97653 0.93812 1.02095 1.22312 0.95397 0.92982 1.01196 0.89070 1.21748 0.98742 0.94078 1.01231 1.21638 1.00572 0.78993 0.99861 1.45788 1.34050 1.09745 1.45562 1.20048 0.82457 0.86645 0.82530 1.90813 1.35718 1.80092 1.32509 1.20144 0.81793 0.87167 0.81570 1.43542 1.35081 1.12793 1.47380 1.90823 1.36037 1.80345 1.32690 1.22258 0.97562 0.80737 1.00776 0.92117 0.89333 0.89309 0.91226 0.91239 0.89859 0.90313 0.90296 0.90382 0.90230 0.90460 0.75053 0.75416 0.75600 0.91613 0.90292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.03 5.35 36.01 0.19 -2.84 16 11 C 0.55 10.66 7.87 -10.99 -0.09 10.58 16 12 O -0.52 -12.11 16.12 5.56 0.09 -12.02 16 13 N -0.63 -8.86 3.33 -170.52 -0.57 -9.43 16 14 C 0.10 1.02 6.49 -3.07 -0.02 1.00 16 15 C -0.12 -0.81 6.42 -24.90 -0.16 -0.97 16 16 C -0.10 -0.69 3.01 -88.46 -0.27 -0.96 16 17 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 18 C -0.12 -0.59 4.84 -26.73 -0.13 -0.72 16 19 C 0.11 0.73 5.58 -4.05 -0.02 0.71 16 20 N -0.70 -4.64 5.55 -60.73 -0.34 -4.98 16 21 C 0.50 4.23 7.89 -11.58 -0.09 4.14 16 22 O -0.52 -5.65 16.48 5.50 0.09 -5.56 16 23 C 0.51 3.86 8.16 -11.58 -0.09 3.77 16 24 N -0.82 -3.49 8.87 30.91 0.27 -3.22 16 25 O -0.52 -5.15 17.31 5.50 0.10 -5.05 16 26 C 0.11 1.22 5.86 -2.53 -0.01 1.20 16 27 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 29 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.44 8.04 -51.93 -0.42 0.03 16 34 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.36 7.96 -51.93 -0.41 -0.05 16 36 H 0.08 0.64 7.75 -51.93 -0.40 0.23 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.41 2.14 7.94 -40.82 -0.32 1.82 16 39 H 0.42 1.33 8.30 -40.82 -0.34 0.99 16 40 H 0.41 0.94 8.93 -40.82 -0.36 0.58 16 41 H 0.07 0.70 7.91 -51.93 -0.41 0.29 16 42 H 0.08 0.99 8.04 -51.93 -0.42 0.58 16 LS Contribution 374.89 15.07 5.65 5.65 Total: -1.00 -38.25 374.89 -7.72 -45.97 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -6.02 Total: -1.22 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -0.49 Total: 2.89 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.10 Total: -43.15 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: 0.28 Total: -22.64 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -38.25 -7.72 -45.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059198591.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.039 kcal (2) G-P(sol) polarization free energy of solvation -38.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.80 seconds