Wall clock time and date at job start Tue Mar 31 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48500 * 109.46975 * 240.00198 * 3 2 1 5 5 H 1.48494 * 109.46964 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47208 * 119.99688 * 3 2 1 7 7 C 1.38798 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99872 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00331 * 0.02562 * 7 2 1 10 10 C 1.80993 * 100.00132 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.46992 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00059 * 0.02562 * 11 10 9 13 13 N 1.34771 * 119.99988 * 179.97438 * 11 10 9 14 14 C 1.47026 * 125.65100 * 0.02691 * 13 11 10 15 15 C 1.54316 * 107.27365 * 180.79395 * 14 13 11 16 16 C 1.55160 * 102.94268 * 22.19228 * 15 14 13 17 17 H 1.08999 * 111.00447 * 82.61518 * 16 15 14 18 18 C 1.53009 * 111.00399 * 206.42607 * 16 15 14 19 19 C 1.52989 * 109.46967 * 184.99880 * 18 16 15 20 20 N 1.46502 * 109.47119 * 180.02562 * 19 18 16 21 21 C 1.34776 * 120.00127 * 180.02562 * 20 19 18 22 22 O 1.21348 * 120.00173 * 359.97438 * 21 20 19 23 23 C 1.49455 * 119.99987 * 179.97438 * 21 20 19 24 24 N 1.34780 * 120.00076 * 179.97438 * 23 21 20 25 25 O 1.21341 * 120.00043 * 359.97438 * 23 21 20 26 26 C 1.47425 * 125.64767 * 179.71693 * 13 11 10 27 27 H 0.97001 * 120.00554 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.47192 * 60.00293 * 10 9 7 29 29 H 1.09000 * 109.47369 * 299.99706 * 10 9 7 30 30 H 1.09004 * 109.87531 * 300.21113 * 14 13 11 31 31 H 1.09000 * 109.87938 * 61.37366 * 14 13 11 32 32 H 1.08997 * 110.72381 * 140.55486 * 15 14 13 33 33 H 1.09003 * 110.72277 * 263.65209 * 15 14 13 34 34 H 1.08996 * 109.46874 * 305.00213 * 18 16 15 35 35 H 1.09003 * 109.47050 * 64.99678 * 18 16 15 36 36 H 1.08996 * 109.47596 * 299.99892 * 19 18 16 37 37 H 1.09003 * 109.47400 * 60.00012 * 19 18 16 38 38 H 0.96994 * 119.99879 * 359.97438 * 20 19 18 39 39 H 0.97001 * 119.99918 * 0.02562 * 24 23 21 40 40 H 0.97000 * 119.99808 * 179.97438 * 24 23 21 41 41 H 1.09001 * 110.36478 * 274.97629 * 26 13 11 42 42 H 1.08998 * 110.36859 * 37.30006 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7912 -5.5023 0.0011 13 7 2.8443 -6.3430 0.0008 14 6 4.3112 -6.2450 0.0003 15 6 4.8667 -7.6846 -0.0205 16 6 3.6847 -8.5048 -0.6017 17 1 3.6703 -8.4518 -1.6903 18 6 3.7400 -9.9583 -0.1270 19 6 2.6359 -10.7622 -0.8165 20 7 2.6884 -12.1539 -0.3616 21 6 1.8047 -13.0526 -0.8388 22 8 0.9652 -12.7091 -1.6449 23 6 1.8587 -14.4724 -0.3751 24 7 0.9746 -15.3711 -0.8519 25 8 2.6984 -14.8160 0.4306 26 6 2.4657 -7.7679 0.0072 27 1 -0.4851 0.8400 0.0004 28 1 3.1245 -3.7313 0.8905 29 1 3.1245 -3.7313 -0.8895 30 1 4.6463 -5.7056 -0.8857 31 1 4.6486 -5.7304 0.9000 32 1 5.7391 -7.7521 -0.6703 33 1 5.1119 -8.0180 0.9879 34 1 4.7110 -10.3856 -0.3773 35 1 3.5950 -9.9937 0.9528 36 1 1.6649 -10.3350 -0.5661 37 1 2.7809 -10.7269 -1.8962 38 1 3.3596 -12.4285 0.2825 39 1 0.3036 -15.0965 -1.4963 40 1 1.0099 -16.2927 -0.5512 41 1 2.2873 -8.1083 1.0272 42 1 1.5799 -7.9278 -0.6075 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001059198591.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:39 Heat of formation + Delta-G solvation = -147.076011 kcal Electronic energy + Delta-G solvation = -24460.258327 eV Core-core repulsion = 20564.805286 eV Total energy + Delta-G solvation = -3895.453042 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 4.08 seconds Orbital eigenvalues (eV) -41.63900 -41.06001 -39.53753 -38.77806 -36.70116 -34.75771 -34.59558 -33.94417 -31.38599 -30.79483 -28.71132 -27.67266 -26.23707 -24.64872 -23.05964 -21.81886 -21.05104 -20.71709 -19.67430 -19.56676 -18.27859 -18.02922 -17.53742 -17.12502 -17.01932 -16.88880 -16.64230 -16.30889 -16.04767 -15.60368 -15.44041 -15.02727 -14.74843 -14.54370 -14.38072 -14.00033 -13.89075 -13.58218 -13.26268 -13.15928 -13.11359 -12.90258 -12.86684 -12.63732 -12.39200 -12.06706 -11.76100 -11.62902 -11.54435 -11.13463 -10.98611 -10.91917 -10.83797 -10.30748 -10.30067 -9.68970 -8.69719 -8.35067 -6.14549 0.30952 1.23553 1.43620 1.44070 1.45872 1.54863 1.55237 2.10588 2.11631 2.26986 2.87060 2.98876 3.22123 3.43797 3.57249 3.65324 3.80173 3.86864 4.11458 4.21371 4.25501 4.34566 4.41274 4.45538 4.51127 4.67483 4.75220 4.88390 4.92062 5.05119 5.07490 5.13915 5.23273 5.35765 5.40318 5.46414 5.51388 5.90266 6.18681 6.26961 6.39087 6.78345 6.99516 7.05538 7.10647 8.74038 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.032229 B = 0.001775 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.565719 B =15773.654517 C =16445.145830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.154 6.154 10 C -0.119 4.119 11 C 0.543 3.457 12 O -0.571 6.571 13 N -0.618 5.618 14 C 0.086 3.914 15 C -0.110 4.110 16 C -0.086 4.086 17 H 0.093 0.907 18 C -0.107 4.107 19 C 0.111 3.889 20 N -0.686 5.686 21 C 0.500 3.500 22 O -0.548 6.548 23 C 0.517 3.483 24 N -0.803 5.803 25 O -0.550 6.550 26 C 0.100 3.900 27 H 0.271 0.729 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.422 0.578 39 H 0.422 0.578 40 H 0.423 0.577 41 H 0.072 0.928 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.258 -29.300 -1.144 32.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.822 3.178 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.695 4.695 8 H 0.102 0.898 9 S 0.074 5.926 10 C -0.270 4.270 11 C 0.331 3.669 12 O -0.450 6.450 13 N -0.353 5.353 14 C -0.036 4.036 15 C -0.148 4.148 16 C -0.105 4.105 17 H 0.111 0.889 18 C -0.145 4.145 19 C -0.012 4.012 20 N -0.340 5.340 21 C 0.280 3.720 22 O -0.426 6.426 23 C 0.295 3.705 24 N -0.369 5.369 25 O -0.428 6.428 26 C -0.022 4.022 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.130 0.870 33 H 0.114 0.886 34 H 0.125 0.875 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.260 0.740 39 H 0.254 0.746 40 H 0.258 0.742 41 H 0.090 0.910 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.297 -29.233 -1.207 31.737 hybrid contribution 0.953 1.041 0.068 1.413 sum 13.250 -28.192 -1.139 31.171 Atomic orbital electron populations 1.70181 1.08036 1.28727 1.47833 1.26158 0.95979 1.03381 0.93624 0.84979 0.77789 0.75511 0.79555 1.18578 1.20372 1.18556 1.23163 0.95345 0.91844 1.59173 0.89844 1.85607 1.10633 0.99359 1.97049 1.23297 1.03339 0.94036 1.06325 1.19806 0.85487 0.86148 0.75471 1.90686 1.17222 1.85833 1.51222 1.48479 1.08091 1.05749 1.72989 1.22419 0.77703 1.00566 1.02913 1.22706 0.97694 0.90578 1.03824 1.22251 0.93329 0.93811 1.01152 0.88863 1.21680 0.99258 0.92118 1.01436 1.21641 1.00455 0.79073 1.00032 1.45762 1.33598 1.09533 1.45068 1.20290 0.82241 0.87284 0.82167 1.90800 1.37053 1.80662 1.34057 1.20005 0.82017 0.87041 0.81448 1.43463 1.34030 1.12961 1.46472 1.90814 1.37304 1.80585 1.34056 1.22542 0.99034 0.79415 1.01245 0.91957 0.87578 0.87581 0.90595 0.90525 0.87038 0.88554 0.87490 0.89470 0.92211 0.90705 0.73955 0.74608 0.74246 0.90971 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.54 13.22 21.65 0.29 -56.25 16 2 C 0.01 0.77 5.49 84.86 0.47 1.23 16 3 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.55 -31.62 9.50 67.95 0.65 -30.97 16 8 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -8.76 20.57 -56.49 -1.16 -9.92 16 10 C -0.12 -4.93 5.35 71.24 0.38 -4.55 16 11 C 0.54 21.49 7.87 87.66 0.69 22.18 16 12 O -0.57 -28.19 16.12 -3.03 -0.05 -28.24 16 13 N -0.62 -16.92 3.33 -811.79 -2.70 -19.62 16 14 C 0.09 1.48 6.49 86.73 0.56 2.04 16 15 C -0.11 -0.95 6.42 31.78 0.20 -0.75 16 16 C -0.09 -0.95 3.01 -9.40 -0.03 -0.98 16 17 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 18 C -0.11 -0.70 4.84 30.59 0.15 -0.55 16 19 C 0.11 1.31 5.58 86.38 0.48 1.79 16 20 N -0.69 -8.22 5.55 -464.42 -2.58 -10.79 16 21 C 0.50 8.12 7.89 87.27 0.69 8.80 16 22 O -0.55 -12.01 16.48 -3.24 -0.05 -12.07 16 23 C 0.52 7.29 8.16 87.27 0.71 8.00 16 24 N -0.80 -5.95 8.87 -174.50 -1.55 -7.49 16 25 O -0.55 -10.24 17.31 -3.22 -0.06 -10.30 16 26 C 0.10 2.15 5.86 86.86 0.51 2.66 16 27 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 28 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 29 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 30 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.10 0.58 8.04 -2.39 -0.02 0.56 16 34 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.09 0.49 7.96 -2.39 -0.02 0.47 16 36 H 0.06 0.96 7.75 -2.39 -0.02 0.94 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 38 H 0.42 3.53 7.94 -92.71 -0.74 2.80 16 39 H 0.42 2.30 8.30 -92.71 -0.77 1.53 16 40 H 0.42 1.35 8.93 -92.71 -0.83 0.52 16 41 H 0.07 1.47 7.91 -2.39 -0.02 1.45 16 42 H 0.06 1.47 8.04 -2.39 -0.02 1.45 16 Total: -1.00 -87.70 374.89 -1.63 -89.33 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -1.26 Total: 10.77 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 5.46 Total: 8.90 kcal Atomic # 7 Polarization: -87.62 SS G_CDS: -6.54 Total: -94.16 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -0.16 Total: -50.60 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.16 Total: -9.92 kcal Total: -87.70 -1.63 -89.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059198591.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.743 kcal (2) G-P(sol) polarization free energy of solvation -87.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.08 seconds