Wall clock time and date at job start Tue Mar 31 2020 06:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86796 * 120.00290 * 2 1 4 4 H 1.48496 * 109.47543 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46969 * 299.99939 * 3 2 1 6 6 H 1.48501 * 109.47283 * 59.99380 * 3 2 1 7 7 C 1.38795 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99904 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00135 * 0.02562 * 7 2 1 10 10 C 1.81003 * 100.00051 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46866 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00196 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99798 * 179.97438 * 11 10 9 14 14 C 1.47022 * 125.64845 * 0.04569 * 13 11 10 15 15 C 1.54323 * 107.27280 * 178.90201 * 14 13 11 16 16 C 1.55154 * 102.93943 * 337.80513 * 15 14 13 17 17 H 1.09004 * 111.04003 * 277.41172 * 16 15 14 18 18 C 1.53007 * 111.00566 * 153.57531 * 16 15 14 19 19 C 1.52991 * 109.47258 * 181.34907 * 18 16 15 20 20 N 1.46500 * 109.47288 * 180.02562 * 19 18 16 21 21 C 1.34773 * 120.00432 * 179.97438 * 20 19 18 22 22 O 1.21353 * 120.00047 * 0.02562 * 21 20 19 23 23 C 1.49454 * 120.00135 * 179.72278 * 21 20 19 24 24 N 1.34777 * 120.00164 * 180.27489 * 23 21 20 25 25 O 1.21343 * 119.99752 * 0.28157 * 23 21 20 26 26 C 1.47419 * 125.64806 * 179.97438 * 13 11 10 27 27 H 0.97004 * 119.99915 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.46879 * 60.00189 * 10 9 7 29 29 H 1.09001 * 109.47192 * 300.00101 * 10 9 7 30 30 H 1.09002 * 109.88254 * 298.32096 * 14 13 11 31 31 H 1.09007 * 109.88426 * 59.32759 * 14 13 11 32 32 H 1.09002 * 110.71941 * 219.44288 * 15 14 13 33 33 H 1.09001 * 110.71704 * 96.16745 * 15 14 13 34 34 H 1.09003 * 109.46498 * 61.35050 * 18 16 15 35 35 H 1.08993 * 109.47095 * 301.35225 * 18 16 15 36 36 H 1.09000 * 109.47648 * 59.99953 * 19 18 16 37 37 H 1.09001 * 109.47172 * 299.99897 * 19 18 16 38 38 H 0.97001 * 119.99454 * 0.02562 * 20 19 18 39 39 H 0.97000 * 119.99555 * 0.02562 * 24 23 21 40 40 H 0.96991 * 120.00395 * 180.02562 * 24 23 21 41 41 H 1.09000 * 110.36636 * 85.33145 * 26 13 11 42 42 H 1.09002 * 110.37023 * 323.00818 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8916 2.3965 1.2124 7 6 2.0102 -1.2020 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9872 -5.3027 -0.0001 12 8 0.7910 -5.5022 0.0000 13 7 2.8439 -6.3432 -0.0007 14 6 4.3109 -6.2452 0.0001 15 6 4.8662 -7.6848 0.0271 16 6 3.6840 -8.5023 0.6112 17 1 3.6683 -8.4448 1.6996 18 6 3.7393 -9.9579 0.1427 19 6 2.5418 -10.7223 0.7105 20 7 2.5951 -12.1161 0.2625 21 6 1.6359 -12.9832 0.6424 22 8 0.7278 -12.6095 1.3553 23 6 1.6870 -14.4036 0.1802 24 7 0.7248 -15.2695 0.5557 25 8 2.5949 -14.7773 -0.5329 26 6 2.4653 -7.7679 -0.0009 27 1 -0.4850 0.8401 -0.0004 28 1 3.1243 -3.7314 0.8905 29 1 3.1244 -3.7314 -0.8894 30 1 4.6488 -5.7344 -0.9016 31 1 4.6455 -5.6996 0.8825 32 1 5.7385 -7.7495 0.6777 33 1 5.1090 -8.0234 -0.9801 34 1 4.6633 -10.4175 0.4936 35 1 3.7080 -9.9905 -0.9463 36 1 1.6178 -10.2626 0.3597 37 1 2.5731 -10.6897 1.7996 38 1 3.3212 -12.4149 -0.3070 39 1 -0.0010 -14.9706 1.1255 40 1 0.7581 -16.1914 0.2561 41 1 2.2870 -8.1129 -1.0193 42 1 1.5793 -7.9251 0.6144 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001059198592.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:59 Heat of formation + Delta-G solvation = -115.043802 kcal Electronic energy + Delta-G solvation = -24490.102559 eV Core-core repulsion = 20596.038539 eV Total energy + Delta-G solvation = -3894.064021 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.00513 -39.93361 -38.85719 -37.65324 -35.97238 -34.19839 -33.07405 -32.42948 -30.40045 -29.60265 -27.76215 -25.67336 -25.35296 -23.84926 -22.37025 -21.18021 -20.42892 -19.34847 -19.11358 -17.79043 -17.62755 -16.76775 -16.63748 -16.46679 -16.21122 -15.76760 -15.44709 -14.84762 -14.79980 -14.43060 -14.38753 -13.97254 -13.89832 -13.57933 -13.23270 -12.84865 -12.62608 -12.58171 -12.38398 -12.21443 -11.89838 -11.76833 -11.41929 -11.07401 -11.04413 -10.99752 -10.97318 -10.75459 -10.43294 -10.17540 -9.80569 -9.69660 -9.41216 -9.07445 -8.50963 -8.22734 -6.50211 -6.21731 -3.92354 0.93530 1.99891 2.73885 2.91276 3.06399 3.21429 3.26059 3.31054 3.36893 3.61975 4.03649 4.08296 4.20272 4.32280 4.35743 4.66771 4.73923 4.98191 5.05084 5.07581 5.13464 5.14521 5.27995 5.43929 5.50003 5.52980 5.58512 5.63468 5.71718 5.74679 5.79842 5.94316 5.94454 5.96681 6.14028 6.37432 6.42165 6.79060 7.29399 7.51628 7.59701 7.66744 8.35385 8.55832 9.23598 10.85780 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.031240 B = 0.001796 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.057468 B =15585.514620 C =16309.063078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.062 6.062 10 C -0.147 4.147 11 C 0.548 3.452 12 O -0.515 6.515 13 N -0.627 5.627 14 C 0.101 3.899 15 C -0.124 4.124 16 C -0.099 4.099 17 H 0.091 0.909 18 C -0.119 4.119 19 C 0.112 3.888 20 N -0.698 5.698 21 C 0.503 3.497 22 O -0.515 6.515 23 C 0.515 3.485 24 N -0.822 5.822 25 O -0.524 6.524 26 C 0.109 3.891 27 H 0.268 0.732 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.413 0.587 39 H 0.415 0.585 40 H 0.411 0.589 41 H 0.066 0.934 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.508 -28.289 1.052 30.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.297 4.297 11 C 0.336 3.664 12 O -0.389 6.389 13 N -0.365 5.365 14 C -0.022 4.022 15 C -0.162 4.162 16 C -0.119 4.119 17 H 0.109 0.891 18 C -0.158 4.158 19 C -0.011 4.011 20 N -0.351 5.351 21 C 0.283 3.717 22 O -0.391 6.391 23 C 0.293 3.707 24 N -0.388 5.388 25 O -0.399 6.399 26 C -0.014 4.014 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.249 0.751 39 H 0.246 0.754 40 H 0.244 0.756 41 H 0.084 0.916 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.494 -28.160 1.115 29.435 hybrid contribution 2.008 0.907 -0.126 2.206 sum 10.502 -27.253 0.989 29.224 Atomic orbital electron populations 1.70032 1.05953 1.27345 1.46921 1.24996 0.95030 0.99035 0.94545 0.86111 0.79567 0.81869 0.77906 1.19624 1.20559 1.20561 1.22900 0.94930 0.91602 1.58857 0.90879 1.85414 1.04991 0.96372 1.96706 1.23507 1.06429 0.94993 1.04775 1.20034 0.85685 0.85490 0.75150 1.90712 1.14942 1.85133 1.48136 1.48494 1.06516 1.05669 1.75816 1.21994 0.80568 0.97440 1.02243 1.22681 0.97657 0.93810 1.02061 1.22312 0.95413 0.92997 1.01186 0.89084 1.21744 0.97905 0.94305 1.01809 1.21641 0.99982 0.79115 1.00387 1.45786 1.27375 1.10462 1.51526 1.20049 0.83131 0.86714 0.81806 1.90817 1.33772 1.78629 1.35868 1.20144 0.82600 0.87195 0.80724 1.43539 1.28002 1.13706 1.53540 1.90823 1.34181 1.78857 1.36059 1.22252 0.97578 0.80756 1.00790 0.92230 0.89307 0.89329 0.91256 0.91230 0.89836 0.90308 0.90302 0.90408 0.90186 0.90452 0.75065 0.75410 0.75605 0.91613 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -15.30 9.50 30.94 0.29 -15.01 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.15 -3.03 5.35 36.01 0.19 -2.84 16 11 C 0.55 10.67 7.87 -10.98 -0.09 10.58 16 12 O -0.52 -12.12 16.12 5.56 0.09 -12.03 16 13 N -0.63 -8.87 3.33 -170.53 -0.57 -9.44 16 14 C 0.10 1.02 6.49 -3.06 -0.02 1.00 16 15 C -0.12 -0.81 6.42 -24.90 -0.16 -0.97 16 16 C -0.10 -0.70 3.07 -88.48 -0.27 -0.97 16 17 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 18 C -0.12 -0.59 4.84 -26.73 -0.13 -0.71 16 19 C 0.11 0.74 5.52 -4.05 -0.02 0.72 16 20 N -0.70 -4.69 5.55 -60.73 -0.34 -5.02 16 21 C 0.50 4.27 7.89 -11.59 -0.09 4.18 16 22 O -0.52 -5.71 16.48 5.49 0.09 -5.62 16 23 C 0.51 3.89 8.16 -11.58 -0.09 3.80 16 24 N -0.82 -3.55 8.87 30.90 0.27 -3.28 16 25 O -0.52 -5.17 17.31 5.50 0.10 -5.07 16 26 C 0.11 1.22 5.57 -2.54 -0.01 1.20 16 27 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 29 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.44 8.04 -51.93 -0.42 0.03 16 34 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.36 8.10 -51.93 -0.42 -0.07 16 36 H 0.08 0.65 7.46 -51.93 -0.39 0.26 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.41 2.16 7.94 -40.82 -0.32 1.83 16 39 H 0.42 1.36 8.30 -40.82 -0.34 1.02 16 40 H 0.41 0.97 8.93 -40.82 -0.36 0.60 16 41 H 0.07 0.70 8.00 -51.93 -0.42 0.29 16 42 H 0.08 1.00 7.96 -51.93 -0.41 0.59 16 LS Contribution 374.47 15.07 5.64 5.64 Total: -1.00 -38.32 374.47 -7.72 -46.04 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -6.01 Total: -1.19 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -0.50 Total: 2.98 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.10 Total: -43.26 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: 0.28 Total: -22.72 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.32 -7.72 -46.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059198592.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.001 kcal (2) G-P(sol) polarization free energy of solvation -38.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds