Wall clock time and date at job start Tue Mar 31 2020 06:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86796 * 120.00290 * 2 1 4 4 H 1.48496 * 109.47543 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46969 * 299.99939 * 3 2 1 6 6 H 1.48501 * 109.47283 * 59.99380 * 3 2 1 7 7 C 1.38795 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99904 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00135 * 0.02562 * 7 2 1 10 10 C 1.81003 * 100.00051 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46866 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00196 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99798 * 179.97438 * 11 10 9 14 14 C 1.47022 * 125.64845 * 0.04569 * 13 11 10 15 15 C 1.54323 * 107.27280 * 178.90201 * 14 13 11 16 16 C 1.55154 * 102.93943 * 337.80513 * 15 14 13 17 17 H 1.09004 * 111.04003 * 277.41172 * 16 15 14 18 18 C 1.53007 * 111.00566 * 153.57531 * 16 15 14 19 19 C 1.52991 * 109.47258 * 181.34907 * 18 16 15 20 20 N 1.46500 * 109.47288 * 180.02562 * 19 18 16 21 21 C 1.34773 * 120.00432 * 179.97438 * 20 19 18 22 22 O 1.21353 * 120.00047 * 0.02562 * 21 20 19 23 23 C 1.49454 * 120.00135 * 179.72278 * 21 20 19 24 24 N 1.34777 * 120.00164 * 180.27489 * 23 21 20 25 25 O 1.21343 * 119.99752 * 0.28157 * 23 21 20 26 26 C 1.47419 * 125.64806 * 179.97438 * 13 11 10 27 27 H 0.97004 * 119.99915 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.46879 * 60.00189 * 10 9 7 29 29 H 1.09001 * 109.47192 * 300.00101 * 10 9 7 30 30 H 1.09002 * 109.88254 * 298.32096 * 14 13 11 31 31 H 1.09007 * 109.88426 * 59.32759 * 14 13 11 32 32 H 1.09002 * 110.71941 * 219.44288 * 15 14 13 33 33 H 1.09001 * 110.71704 * 96.16745 * 15 14 13 34 34 H 1.09003 * 109.46498 * 61.35050 * 18 16 15 35 35 H 1.08993 * 109.47095 * 301.35225 * 18 16 15 36 36 H 1.09000 * 109.47648 * 59.99953 * 19 18 16 37 37 H 1.09001 * 109.47172 * 299.99897 * 19 18 16 38 38 H 0.97001 * 119.99454 * 0.02562 * 20 19 18 39 39 H 0.97000 * 119.99555 * 0.02562 * 24 23 21 40 40 H 0.96991 * 120.00395 * 180.02562 * 24 23 21 41 41 H 1.09000 * 110.36636 * 85.33145 * 26 13 11 42 42 H 1.09002 * 110.37023 * 323.00818 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8916 2.3965 1.2124 7 6 2.0102 -1.2020 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9872 -5.3027 -0.0001 12 8 0.7910 -5.5022 0.0000 13 7 2.8439 -6.3432 -0.0007 14 6 4.3109 -6.2452 0.0001 15 6 4.8662 -7.6848 0.0271 16 6 3.6840 -8.5023 0.6112 17 1 3.6683 -8.4448 1.6996 18 6 3.7393 -9.9579 0.1427 19 6 2.5418 -10.7223 0.7105 20 7 2.5951 -12.1161 0.2625 21 6 1.6359 -12.9832 0.6424 22 8 0.7278 -12.6095 1.3553 23 6 1.6870 -14.4036 0.1802 24 7 0.7248 -15.2695 0.5557 25 8 2.5949 -14.7773 -0.5329 26 6 2.4653 -7.7679 -0.0009 27 1 -0.4850 0.8401 -0.0004 28 1 3.1243 -3.7314 0.8905 29 1 3.1244 -3.7314 -0.8894 30 1 4.6488 -5.7344 -0.9016 31 1 4.6455 -5.6996 0.8825 32 1 5.7385 -7.7495 0.6777 33 1 5.1090 -8.0234 -0.9801 34 1 4.6633 -10.4175 0.4936 35 1 3.7080 -9.9905 -0.9463 36 1 1.6178 -10.2626 0.3597 37 1 2.5731 -10.6897 1.7996 38 1 3.3212 -12.4149 -0.3070 39 1 -0.0010 -14.9706 1.1255 40 1 0.7581 -16.1914 0.2561 41 1 2.2870 -8.1129 -1.0193 42 1 1.5793 -7.9251 0.6144 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001059198592.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:57 Heat of formation + Delta-G solvation = -147.208006 kcal Electronic energy + Delta-G solvation = -24491.497304 eV Core-core repulsion = 20596.038539 eV Total energy + Delta-G solvation = -3895.458765 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.64177 -41.06411 -39.53954 -38.78447 -36.70028 -34.75975 -34.59981 -33.94632 -31.38520 -30.80328 -28.68355 -27.68030 -26.24892 -24.68690 -23.05452 -21.80565 -21.04721 -20.71370 -19.66701 -19.57394 -18.27689 -18.03143 -17.56759 -17.12383 -17.01858 -16.89698 -16.63533 -16.31662 -16.06083 -15.59633 -15.43264 -15.02006 -14.76086 -14.54964 -14.37872 -13.99122 -13.90045 -13.58039 -13.26401 -13.16216 -13.13381 -12.91816 -12.90698 -12.60988 -12.38107 -12.04106 -11.73361 -11.64177 -11.54076 -11.16879 -10.98756 -10.92026 -10.83930 -10.30987 -10.29475 -9.69001 -8.69942 -8.35870 -6.15013 0.30811 1.23566 1.41307 1.43613 1.45629 1.54773 1.56985 2.10365 2.11555 2.26223 2.86829 2.98376 3.21815 3.43050 3.57126 3.65362 3.81366 3.86321 4.11979 4.21052 4.25198 4.34442 4.41186 4.45498 4.50430 4.67053 4.74630 4.87576 4.91987 5.05608 5.08024 5.13288 5.23311 5.36141 5.40630 5.45908 5.51203 5.90149 6.18802 6.26829 6.39017 6.78348 6.99396 7.05163 7.10581 8.73797 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.031240 B = 0.001796 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.057468 B =15585.514620 C =16309.063078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.001 2.999 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.083 0.917 9 S -0.154 6.154 10 C -0.119 4.119 11 C 0.543 3.457 12 O -0.570 6.570 13 N -0.618 5.618 14 C 0.086 3.914 15 C -0.110 4.110 16 C -0.086 4.086 17 H 0.093 0.907 18 C -0.107 4.107 19 C 0.110 3.890 20 N -0.686 5.686 21 C 0.500 3.500 22 O -0.548 6.548 23 C 0.517 3.483 24 N -0.803 5.803 25 O -0.550 6.550 26 C 0.100 3.900 27 H 0.271 0.729 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.423 0.577 39 H 0.422 0.578 40 H 0.423 0.577 41 H 0.072 0.928 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.062 -29.236 0.924 32.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.823 3.177 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.270 4.270 11 C 0.331 3.669 12 O -0.449 6.449 13 N -0.353 5.353 14 C -0.036 4.036 15 C -0.148 4.148 16 C -0.106 4.106 17 H 0.112 0.888 18 C -0.144 4.144 19 C -0.013 4.013 20 N -0.339 5.339 21 C 0.280 3.720 22 O -0.426 6.426 23 C 0.295 3.705 24 N -0.369 5.369 25 O -0.427 6.427 26 C -0.023 4.023 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.130 0.870 33 H 0.114 0.886 34 H 0.125 0.875 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.261 0.739 39 H 0.254 0.746 40 H 0.258 0.742 41 H 0.090 0.910 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.109 -29.173 0.983 31.601 hybrid contribution 0.920 1.055 -0.078 1.402 sum 13.029 -28.118 0.905 31.003 Atomic orbital electron populations 1.70199 1.08040 1.28596 1.47990 1.26162 0.95987 1.03399 0.93656 0.84871 0.78619 0.76125 0.78105 1.17899 1.19881 1.19896 1.23226 0.95346 0.91819 1.58929 0.89842 1.85616 1.10656 0.99394 1.97037 1.23298 1.03326 0.94026 1.06332 1.19807 0.85487 0.86146 0.75473 1.90686 1.17223 1.85831 1.51207 1.48479 1.08093 1.05740 1.72998 1.22421 0.77698 1.00560 1.02931 1.22708 0.97701 0.90570 1.03781 1.22255 0.93333 0.93829 1.01147 0.88845 1.21680 0.98015 0.92398 1.02354 1.21642 1.00175 0.79169 1.00292 1.45756 1.27061 1.10246 1.50871 1.20299 0.82953 0.87341 0.81420 1.90804 1.35063 1.79234 1.37488 1.19997 0.82864 0.87012 0.80615 1.43460 1.27097 1.13907 1.52460 1.90813 1.35335 1.79102 1.37489 1.22530 0.99058 0.79439 1.01235 0.91962 0.87569 0.87581 0.90547 0.90593 0.86992 0.88560 0.87501 0.89358 0.92203 0.90821 0.73935 0.74615 0.74241 0.91021 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.57 13.22 21.65 0.29 -56.28 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 1.00 43.74 29.55 68.60 2.03 45.77 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.55 -31.51 9.50 67.95 0.65 -30.87 16 8 H 0.08 4.47 7.80 -2.91 -0.02 4.44 16 9 S -0.15 -8.79 20.57 -56.49 -1.16 -9.95 16 10 C -0.12 -4.92 5.35 71.24 0.38 -4.54 16 11 C 0.54 21.51 7.87 87.66 0.69 22.20 16 12 O -0.57 -28.21 16.12 -3.01 -0.05 -28.26 16 13 N -0.62 -16.95 3.33 -811.82 -2.70 -19.65 16 14 C 0.09 1.48 6.49 86.73 0.56 2.04 16 15 C -0.11 -0.95 6.42 31.78 0.20 -0.74 16 16 C -0.09 -0.96 3.07 -9.41 -0.03 -0.99 16 17 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 18 C -0.11 -0.69 4.84 30.59 0.15 -0.55 16 19 C 0.11 1.33 5.52 86.38 0.48 1.80 16 20 N -0.69 -8.32 5.55 -464.42 -2.58 -10.89 16 21 C 0.50 8.22 7.89 87.27 0.69 8.91 16 22 O -0.55 -12.20 16.48 -3.26 -0.05 -12.26 16 23 C 0.52 7.36 8.16 87.27 0.71 8.07 16 24 N -0.80 -6.08 8.87 -174.50 -1.55 -7.62 16 25 O -0.55 -10.27 17.31 -3.23 -0.06 -10.32 16 26 C 0.10 2.15 5.57 86.85 0.48 2.63 16 27 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 28 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 29 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.10 0.58 8.04 -2.39 -0.02 0.56 16 34 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.09 0.47 8.10 -2.39 -0.02 0.45 16 36 H 0.06 0.98 7.46 -2.39 -0.02 0.97 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.42 3.55 7.94 -92.71 -0.74 2.81 16 39 H 0.42 2.39 8.30 -92.71 -0.77 1.62 16 40 H 0.42 1.40 8.93 -92.71 -0.83 0.57 16 41 H 0.07 1.47 8.00 -2.39 -0.02 1.46 16 42 H 0.06 1.47 7.96 -2.39 -0.02 1.45 16 Total: -1.00 -87.89 374.47 -1.66 -89.55 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -1.26 Total: 10.77 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 5.43 Total: 9.16 kcal Atomic # 7 Polarization: -87.91 SS G_CDS: -6.54 Total: -94.45 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -0.16 Total: -50.84 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.16 Total: -9.95 kcal Total: -87.89 -1.66 -89.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059198592.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.657 kcal (2) G-P(sol) polarization free energy of solvation -87.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds