Wall clock time and date at job start Tue Mar 31 2020 06:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00318 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00269 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00068 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47595 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.47366 * 179.97438 * 15 14 13 17 17 H 1.08997 * 110.88936 * 305.70271 * 16 15 14 18 18 C 1.55162 * 111.00483 * 181.82093 * 16 15 14 19 19 C 1.54320 * 102.94446 * 206.42549 * 18 16 15 20 20 N 1.47029 * 107.26899 * 22.19562 * 19 18 16 21 21 C 1.34777 * 125.64723 * 181.09849 * 20 19 18 22 22 O 1.21344 * 120.00360 * 179.97438 * 21 20 19 23 23 C 1.49459 * 119.99946 * 359.97281 * 21 20 19 24 24 N 1.34777 * 119.99946 * 179.97438 * 23 21 20 25 25 O 1.21348 * 120.00126 * 0.02562 * 23 21 20 26 26 C 1.47468 * 108.72268 * 1.02196 * 20 19 18 27 27 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 29 29 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 30 30 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 31 31 H 1.09008 * 109.46975 * 299.99840 * 14 13 11 32 32 H 1.09007 * 109.47007 * 59.99239 * 14 13 11 33 33 H 1.08999 * 109.47369 * 300.00444 * 15 14 13 34 34 H 1.09009 * 109.46793 * 59.99447 * 15 14 13 35 35 H 1.09001 * 110.72130 * 324.79282 * 18 16 15 36 36 H 1.09001 * 110.71687 * 88.06193 * 18 16 15 37 37 H 1.09002 * 109.88232 * 141.60859 * 19 18 16 38 38 H 1.08995 * 109.88365 * 262.62070 * 19 18 16 39 39 H 0.96996 * 119.99395 * 0.02562 * 24 23 21 40 40 H 0.96992 * 119.99690 * 180.02562 * 24 23 21 41 41 H 1.08999 * 110.40380 * 217.08242 * 26 20 19 42 42 H 1.09000 * 110.34392 * 94.75031 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6527 0.7001 6 1 3.5480 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 6 3.5021 -8.6986 -0.0388 16 6 2.9656 -10.1313 -0.0457 17 1 2.2729 -10.2909 0.7807 18 6 4.1263 -11.1601 -0.0049 19 6 3.5118 -12.4017 -0.6849 20 7 2.3917 -11.9351 -1.5152 21 6 1.5830 -12.7188 -2.2555 22 8 0.6856 -12.2231 -2.9047 23 6 1.7914 -14.1987 -2.2770 24 7 0.9823 -14.9825 -3.0169 25 8 2.6885 -14.6945 -1.6275 26 6 2.2981 -10.4677 -1.4025 27 1 -0.4849 0.8401 0.0004 28 1 3.1244 -3.7267 -0.9039 29 1 3.1244 -3.7361 0.8761 30 1 3.8007 -6.1835 -0.0260 31 1 1.7212 -7.8796 0.8553 32 1 1.7219 -7.8705 -0.9248 33 1 4.1109 -8.5339 -0.9278 34 1 4.1108 -8.5431 0.8521 35 1 4.9844 -10.7960 -0.5699 36 1 4.4076 -11.3836 1.0242 37 1 4.2591 -12.8895 -1.3109 38 1 3.1506 -13.0981 0.0717 39 1 0.2651 -14.5861 -3.5358 40 1 1.1174 -15.9429 -3.0306 41 1 1.2547 -10.1525 -1.4005 42 1 2.8382 -9.9897 -2.2198 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001060280179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:03 Heat of formation + Delta-G solvation = -113.192657 kcal Electronic energy + Delta-G solvation = -24465.293640 eV Core-core repulsion = 20571.309891 eV Total energy + Delta-G solvation = -3893.983749 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 3.40 seconds Orbital eigenvalues (eV) -41.17108 -39.47278 -38.98915 -38.12756 -35.43284 -34.22052 -33.00659 -32.42411 -30.72193 -29.41992 -27.97102 -25.79477 -25.41325 -23.55630 -22.46589 -21.00992 -20.28676 -20.16711 -18.51458 -17.85347 -17.59493 -16.85962 -16.73199 -16.21982 -16.06018 -15.80695 -15.33298 -15.04616 -14.80124 -14.58621 -14.16762 -13.94777 -13.76640 -13.45479 -13.35990 -13.13972 -12.83361 -12.59914 -12.48939 -12.09535 -12.04616 -11.67082 -11.37965 -11.11480 -11.07072 -11.04002 -11.02080 -10.75408 -10.40662 -10.07901 -9.81297 -9.40241 -9.21773 -9.06799 -8.89139 -8.23058 -6.49622 -6.21327 -3.91899 0.96737 1.92534 2.75084 3.02477 3.10565 3.18559 3.22562 3.28283 3.32327 3.69671 3.91517 4.10062 4.12325 4.20730 4.34187 4.70541 4.80018 4.90136 4.95145 5.10096 5.13819 5.19859 5.26529 5.34975 5.38077 5.43616 5.52576 5.59117 5.63003 5.74431 5.84424 5.90952 5.94745 5.99180 6.13983 6.43925 6.60897 6.80012 7.23731 7.53824 7.59776 7.70253 8.35456 8.61832 9.23936 10.86093 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.033461 B = 0.001692 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.595891 B =16540.488691 C =17117.667564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.517 6.517 13 N -0.740 5.740 14 C 0.118 3.882 15 C -0.119 4.119 16 C -0.097 4.097 17 H 0.093 0.907 18 C -0.130 4.130 19 C 0.106 3.894 20 N -0.589 5.589 21 C 0.516 3.484 22 O -0.518 6.518 23 C 0.517 3.483 24 N -0.822 5.822 25 O -0.519 6.519 26 C 0.105 3.895 27 H 0.268 0.732 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.398 0.602 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.415 0.585 40 H 0.411 0.589 41 H 0.088 0.912 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.963 -29.719 -2.477 31.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.391 6.391 13 N -0.395 5.395 14 C -0.006 4.006 15 C -0.157 4.157 16 C -0.117 4.117 17 H 0.111 0.889 18 C -0.168 4.168 19 C -0.016 4.016 20 N -0.323 5.323 21 C 0.299 3.701 22 O -0.394 6.394 23 C 0.295 3.705 24 N -0.389 5.389 25 O -0.394 6.394 26 C -0.017 4.017 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.232 0.768 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.245 0.755 40 H 0.244 0.756 41 H 0.107 0.893 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.871 -29.884 -2.397 30.996 hybrid contribution 2.142 1.050 -0.298 2.404 sum 10.013 -28.834 -2.696 30.641 Atomic orbital electron populations 1.70023 1.05953 1.27446 1.46837 1.24998 0.95029 0.99030 0.94541 0.86165 0.79398 0.81569 0.78340 1.20279 1.20751 1.19708 1.22872 0.94908 0.91673 1.58967 0.90924 1.85414 1.04954 0.96332 1.96712 1.23531 1.06558 0.95429 1.04904 1.20314 0.86540 0.86315 0.75159 1.90708 1.15397 1.85616 1.47391 1.45991 1.09919 1.05513 1.78079 1.21316 0.95996 0.80747 1.02589 1.21739 0.98030 0.92389 1.03550 1.22329 0.97537 0.94503 0.97341 0.88868 1.22808 0.97911 0.94137 1.01970 1.22226 0.88174 0.96815 0.94434 1.48280 1.31000 1.08159 1.44895 1.19731 0.82348 0.87339 0.80726 1.90811 1.31336 1.75275 1.42017 1.20035 0.82305 0.88100 0.80040 1.43520 1.35035 1.11143 1.49171 1.90807 1.31330 1.75602 1.41645 1.22579 1.02947 0.78472 0.97691 0.92183 0.89231 0.89231 0.76838 0.91513 0.91544 0.90659 0.90258 0.90046 0.89384 0.90321 0.90190 0.75461 0.75609 0.89320 0.90274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 7 C -0.54 -15.26 9.50 30.94 0.29 -14.97 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.06 6.16 36.00 0.22 -2.84 16 11 C 0.53 9.75 7.85 -10.99 -0.09 9.66 16 12 O -0.52 -11.75 15.86 5.56 0.09 -11.66 16 13 N -0.74 -9.24 5.56 -60.29 -0.33 -9.58 16 14 C 0.12 1.22 5.55 -4.04 -0.02 1.20 16 15 C -0.12 -0.73 4.84 -26.74 -0.13 -0.86 16 16 C -0.10 -0.58 3.04 -88.47 -0.27 -0.85 16 17 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 18 C -0.13 -0.61 6.42 -24.90 -0.16 -0.77 16 19 C 0.11 0.70 5.49 -3.06 -0.02 0.68 16 20 N -0.59 -5.04 3.33 -170.99 -0.57 -5.60 16 21 C 0.52 5.07 7.91 -11.58 -0.09 4.98 16 22 O -0.52 -6.33 16.73 5.50 0.09 -6.24 16 23 C 0.52 4.26 8.13 -11.58 -0.09 4.17 16 24 N -0.82 -3.93 8.87 30.91 0.27 -3.66 16 25 O -0.52 -5.19 14.96 5.50 0.08 -5.11 16 26 C 0.10 0.83 5.71 -2.51 -0.01 0.82 16 27 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 29 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 30 H 0.40 3.69 8.47 -40.82 -0.35 3.34 16 31 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 32 H 0.07 0.77 7.60 -51.92 -0.39 0.37 16 33 H 0.07 0.41 8.04 -51.93 -0.42 -0.01 16 34 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 35 H 0.08 0.32 8.04 -51.93 -0.42 -0.09 16 36 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.53 7.70 -51.93 -0.40 0.13 16 38 H 0.08 0.56 7.58 -51.93 -0.39 0.16 16 39 H 0.41 1.58 8.30 -40.82 -0.34 1.24 16 40 H 0.41 1.08 8.93 -40.82 -0.36 0.72 16 41 H 0.09 0.83 8.00 -51.93 -0.42 0.42 16 42 H 0.08 0.60 7.96 -51.93 -0.41 0.19 16 LS Contribution 371.63 15.07 5.60 5.60 Total: -1.00 -37.98 371.63 -7.71 -45.69 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -5.98 Total: 0.30 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -0.46 Total: 3.23 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 0.10 Total: -44.30 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: 0.26 Total: -23.01 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.98 -7.71 -45.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001060280179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.499 kcal (2) G-P(sol) polarization free energy of solvation -37.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.40 seconds