Wall clock time and date at job start Tue Mar 31 2020 06:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00318 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00269 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00068 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47595 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.47366 * 179.97438 * 15 14 13 17 17 H 1.08997 * 110.88936 * 305.70271 * 16 15 14 18 18 C 1.55162 * 111.00483 * 181.82093 * 16 15 14 19 19 C 1.54320 * 102.94446 * 206.42549 * 18 16 15 20 20 N 1.47029 * 107.26899 * 22.19562 * 19 18 16 21 21 C 1.34777 * 125.64723 * 181.09849 * 20 19 18 22 22 O 1.21344 * 120.00360 * 179.97438 * 21 20 19 23 23 C 1.49459 * 119.99946 * 359.97281 * 21 20 19 24 24 N 1.34777 * 119.99946 * 179.97438 * 23 21 20 25 25 O 1.21348 * 120.00126 * 0.02562 * 23 21 20 26 26 C 1.47468 * 108.72268 * 1.02196 * 20 19 18 27 27 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 29 29 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 30 30 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 31 31 H 1.09008 * 109.46975 * 299.99840 * 14 13 11 32 32 H 1.09007 * 109.47007 * 59.99239 * 14 13 11 33 33 H 1.08999 * 109.47369 * 300.00444 * 15 14 13 34 34 H 1.09009 * 109.46793 * 59.99447 * 15 14 13 35 35 H 1.09001 * 110.72130 * 324.79282 * 18 16 15 36 36 H 1.09001 * 110.71687 * 88.06193 * 18 16 15 37 37 H 1.09002 * 109.88232 * 141.60859 * 19 18 16 38 38 H 1.08995 * 109.88365 * 262.62070 * 19 18 16 39 39 H 0.96996 * 119.99395 * 0.02562 * 24 23 21 40 40 H 0.96992 * 119.99690 * 180.02562 * 24 23 21 41 41 H 1.08999 * 110.40380 * 217.08242 * 26 20 19 42 42 H 1.09000 * 110.34392 * 94.75031 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6527 0.7001 6 1 3.5480 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 6 3.5021 -8.6986 -0.0388 16 6 2.9656 -10.1313 -0.0457 17 1 2.2729 -10.2909 0.7807 18 6 4.1263 -11.1601 -0.0049 19 6 3.5118 -12.4017 -0.6849 20 7 2.3917 -11.9351 -1.5152 21 6 1.5830 -12.7188 -2.2555 22 8 0.6856 -12.2231 -2.9047 23 6 1.7914 -14.1987 -2.2770 24 7 0.9823 -14.9825 -3.0169 25 8 2.6885 -14.6945 -1.6275 26 6 2.2981 -10.4677 -1.4025 27 1 -0.4849 0.8401 0.0004 28 1 3.1244 -3.7267 -0.9039 29 1 3.1244 -3.7361 0.8761 30 1 3.8007 -6.1835 -0.0260 31 1 1.7212 -7.8796 0.8553 32 1 1.7219 -7.8705 -0.9248 33 1 4.1109 -8.5339 -0.9278 34 1 4.1108 -8.5431 0.8521 35 1 4.9844 -10.7960 -0.5699 36 1 4.4076 -11.3836 1.0242 37 1 4.2591 -12.8895 -1.3109 38 1 3.1506 -13.0981 0.0717 39 1 0.2651 -14.5861 -3.5358 40 1 1.1174 -15.9429 -3.0306 41 1 1.2547 -10.1525 -1.4005 42 1 2.8382 -9.9897 -2.2198 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001060280179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:02 Heat of formation + Delta-G solvation = -144.933277 kcal Electronic energy + Delta-G solvation = -24466.670016 eV Core-core repulsion = 20571.309891 eV Total energy + Delta-G solvation = -3895.360126 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.84472 -40.61976 -39.84205 -38.88005 -36.43352 -34.83266 -34.57489 -33.88319 -31.65756 -30.46616 -28.84635 -27.65993 -26.45734 -24.25630 -23.09942 -21.95232 -21.15580 -20.91206 -19.80267 -19.11614 -18.25565 -17.80675 -17.48355 -17.29021 -17.09107 -16.87382 -16.85693 -16.34234 -15.78383 -15.66424 -15.44017 -14.82191 -14.74874 -14.50336 -14.39236 -14.09584 -14.01541 -13.54257 -13.42089 -13.15485 -13.09392 -12.88201 -12.81274 -12.60539 -12.37718 -12.01518 -11.73279 -11.63512 -11.57688 -11.13413 -10.93577 -10.92144 -10.78994 -10.25917 -10.07746 -9.89428 -8.65920 -8.33728 -6.11934 0.26832 1.28247 1.30966 1.43461 1.48748 1.58968 1.64288 2.05283 2.27465 2.32991 2.61796 3.00472 3.33631 3.39414 3.54607 3.59306 3.80711 3.99278 4.17301 4.24058 4.30001 4.35479 4.41815 4.49997 4.53570 4.65349 4.74878 4.86900 4.90653 4.95447 5.07704 5.14843 5.23722 5.39713 5.42796 5.49131 5.52696 5.91126 6.15965 6.20767 6.55936 6.60583 6.96720 7.07547 7.29362 8.75506 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.033461 B = 0.001692 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.595891 B =16540.488691 C =17117.667564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.157 6.157 10 C -0.129 4.129 11 C 0.530 3.470 12 O -0.570 6.570 13 N -0.711 5.711 14 C 0.114 3.886 15 C -0.103 4.103 16 C -0.090 4.090 17 H 0.091 0.909 18 C -0.117 4.117 19 C 0.103 3.897 20 N -0.589 5.589 21 C 0.507 3.493 22 O -0.552 6.552 23 C 0.518 3.482 24 N -0.802 5.802 25 O -0.539 6.539 26 C 0.098 3.902 27 H 0.271 0.729 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.419 0.581 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.421 0.579 40 H 0.424 0.576 41 H 0.066 0.934 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.313 -30.283 -2.096 33.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.070 5.930 10 C -0.280 4.280 11 C 0.316 3.684 12 O -0.448 6.448 13 N -0.365 5.365 14 C -0.009 4.009 15 C -0.141 4.141 16 C -0.109 4.109 17 H 0.109 0.891 18 C -0.155 4.155 19 C -0.018 4.018 20 N -0.322 5.322 21 C 0.290 3.710 22 O -0.431 6.431 23 C 0.296 3.704 24 N -0.369 5.369 25 O -0.416 6.416 26 C -0.024 4.024 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.256 0.744 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.253 0.747 40 H 0.259 0.741 41 H 0.084 0.916 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.287 -30.508 -2.018 32.591 hybrid contribution 1.111 1.070 -0.440 1.604 sum 12.398 -29.437 -2.458 32.036 Atomic orbital electron populations 1.70195 1.08023 1.28576 1.48053 1.26150 0.95964 1.03381 0.93752 0.84938 0.78220 0.75953 0.78766 1.19359 1.20381 1.18061 1.23217 0.95387 0.91951 1.58808 0.89770 1.85623 1.10868 0.99423 1.97058 1.23376 1.03414 0.94335 1.06907 1.20101 0.86265 0.86854 0.75164 1.90698 1.17669 1.86183 1.50290 1.45723 1.10350 1.05105 1.75358 1.21493 0.97820 0.80183 1.01449 1.21663 0.96297 0.90709 1.05462 1.22262 0.98004 0.94857 0.95803 0.89106 1.22805 0.97349 0.92213 1.03128 1.22360 0.87494 0.97868 0.94125 1.48459 1.31011 1.08430 1.44324 1.20123 0.82118 0.88235 0.80514 1.90786 1.32773 1.75982 1.43581 1.19827 0.82597 0.87535 0.80443 1.43415 1.34105 1.11636 1.47748 1.90797 1.32358 1.75607 1.42856 1.22667 1.02011 0.78377 0.99307 0.92036 0.87119 0.87023 0.74388 0.92573 0.93056 0.89022 0.87971 0.88487 0.87450 0.90313 0.90590 0.74704 0.74110 0.91574 0.89841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.24 13.22 21.65 0.29 -55.96 16 2 C 0.01 0.69 5.49 84.86 0.47 1.16 16 3 Si 1.00 43.44 29.55 68.60 2.03 45.46 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 7 C -0.55 -31.09 9.50 67.96 0.65 -30.44 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 9 S -0.16 -8.73 20.57 -56.49 -1.16 -9.89 16 10 C -0.13 -5.00 6.16 71.23 0.44 -4.56 16 11 C 0.53 19.13 7.85 87.66 0.69 19.82 16 12 O -0.57 -26.55 15.86 -3.02 -0.05 -26.60 16 13 N -0.71 -16.16 5.56 -463.06 -2.57 -18.74 16 14 C 0.11 2.20 5.55 86.38 0.48 2.68 16 15 C -0.10 -0.92 4.84 30.59 0.15 -0.78 16 16 C -0.09 -0.86 3.04 -9.40 -0.03 -0.89 16 17 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 18 C -0.12 -0.71 6.42 31.78 0.20 -0.51 16 19 C 0.10 1.20 5.49 86.73 0.48 1.68 16 20 N -0.59 -9.83 3.33 -813.25 -2.71 -12.54 16 21 C 0.51 10.10 7.91 87.27 0.69 10.79 16 22 O -0.55 -14.00 16.73 -3.23 -0.05 -14.05 16 23 C 0.52 8.37 8.13 87.27 0.71 9.08 16 24 N -0.80 -7.10 8.87 -174.49 -1.55 -8.65 16 25 O -0.54 -10.45 14.96 -3.24 -0.05 -10.50 16 26 C 0.10 1.50 5.71 86.85 0.50 2.00 16 27 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 28 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 29 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 30 H 0.42 6.16 8.47 -92.71 -0.79 5.37 16 31 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.05 1.18 7.60 -2.38 -0.02 1.16 16 33 H 0.09 0.61 8.04 -2.39 -0.02 0.59 16 34 H 0.10 0.56 8.14 -2.38 -0.02 0.55 16 35 H 0.10 0.35 8.04 -2.39 -0.02 0.34 16 36 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.08 0.94 7.70 -2.39 -0.02 0.93 16 38 H 0.08 0.97 7.58 -2.39 -0.02 0.95 16 39 H 0.42 2.99 8.30 -92.71 -0.77 2.22 16 40 H 0.42 1.74 8.93 -92.71 -0.83 0.91 16 41 H 0.07 1.31 8.00 -2.39 -0.02 1.29 16 42 H 0.08 1.20 7.96 -2.39 -0.02 1.18 16 Total: -1.00 -86.39 371.63 -1.71 -88.11 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -1.30 Total: 13.35 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 5.41 Total: 10.01 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -6.54 Total: -95.88 kcal Atomic # 8 Polarization: -51.01 SS G_CDS: -0.15 Total: -51.16 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.89 kcal Total: -86.39 -1.71 -88.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001060280179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.826 kcal (2) G-P(sol) polarization free energy of solvation -86.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds