Wall clock time and date at job start Tue Mar 31 2020 06:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86798 * 119.99580 * 2 1 4 4 H 1.48505 * 109.46926 * 269.99149 * 3 2 1 5 5 H 1.48494 * 109.47720 * 29.99250 * 3 2 1 6 6 H 1.48503 * 109.46984 * 149.99845 * 3 2 1 7 7 C 1.38796 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00377 * 0.02562 * 7 2 1 9 9 S 1.76202 * 119.99901 * 180.02562 * 7 2 1 10 10 C 1.80991 * 100.00298 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47366 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00007 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00115 * 179.97438 * 11 10 9 14 14 C 1.46504 * 120.00187 * 180.02562 * 13 11 10 15 15 C 1.52990 * 109.47174 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.47312 * 179.97438 * 15 14 13 17 17 H 1.09001 * 110.88276 * 57.42146 * 16 15 14 18 18 C 1.55151 * 111.04122 * 181.32738 * 16 15 14 19 19 C 1.54333 * 103.02361 * 153.39708 * 18 16 15 20 20 N 1.47028 * 107.26018 * 338.14029 * 19 18 16 21 21 C 1.34777 * 125.64328 * 178.85313 * 20 19 18 22 22 O 1.21353 * 119.99672 * 179.69570 * 21 20 19 23 23 C 1.49446 * 120.00342 * 359.68889 * 21 20 19 24 24 N 1.34777 * 120.00341 * 180.02562 * 23 21 20 25 25 O 1.21353 * 119.99982 * 0.02562 * 23 21 20 26 26 C 1.47419 * 108.70460 * 358.58486 * 20 19 18 27 27 H 0.97002 * 120.00152 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.47331 * 59.99705 * 10 9 7 29 29 H 1.09007 * 109.47402 * 299.99881 * 10 9 7 30 30 H 0.96997 * 120.00196 * 0.02562 * 13 11 10 31 31 H 1.08998 * 109.47151 * 59.99606 * 14 13 11 32 32 H 1.09007 * 109.46694 * 300.00320 * 14 13 11 33 33 H 1.08998 * 109.47796 * 59.99520 * 15 14 13 34 34 H 1.09007 * 109.47179 * 299.99543 * 15 14 13 35 35 H 1.09005 * 110.72237 * 271.95327 * 18 16 15 36 36 H 1.09001 * 110.72142 * 35.04982 * 18 16 15 37 37 H 1.09000 * 109.99048 * 218.67168 * 19 18 16 38 38 H 1.09001 * 109.78176 * 97.49481 * 19 18 16 39 39 H 0.97001 * 120.00485 * 180.02562 * 24 23 21 40 40 H 0.97005 * 119.99790 * 359.72222 * 24 23 21 41 41 H 1.09005 * 110.36505 * 143.19314 * 26 20 19 42 42 H 1.08994 * 110.37059 * 265.40650 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6528 0.6998 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0867 -2.9844 0.0025 11 6 5.5732 -3.2323 0.0026 12 8 6.3442 -2.2961 0.0024 13 7 6.0459 -4.4945 0.0041 14 6 7.4909 -4.7356 0.0048 15 6 7.7566 -6.2422 0.0057 16 6 9.2658 -6.4940 0.0058 17 1 9.7393 -6.0165 0.8636 18 6 9.5770 -8.0136 -0.0267 19 6 10.9664 -8.0698 -0.6963 20 7 11.1346 -6.8232 -1.4575 21 6 12.2267 -6.4780 -2.1678 22 8 12.2534 -5.4216 -2.7644 23 6 13.4048 -7.3960 -2.2206 24 7 14.4971 -7.0505 -2.9305 25 8 13.3779 -8.4526 -1.6243 26 6 9.9084 -6.0165 -1.3203 27 1 -0.4850 0.8400 -0.0004 28 1 3.6441 -3.4321 -0.8873 29 1 3.6435 -3.4309 0.8927 30 1 5.4293 -5.2433 0.0047 31 1 7.9336 -4.2875 0.8944 32 1 7.9341 -4.2893 -0.8856 33 1 7.3140 -6.6899 -0.8840 34 1 7.3134 -6.6888 0.8959 35 1 9.6165 -8.4210 0.9836 36 1 8.8389 -8.5457 -0.6269 37 1 11.0213 -8.9254 -1.3694 38 1 11.7409 -8.1455 0.0669 39 1 15.2616 -7.6465 -2.9651 40 1 14.5170 -6.2078 -3.4105 41 1 10.1562 -4.9566 -1.2617 42 1 9.2363 -6.2024 -2.1580 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001060280180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:10 Heat of formation + Delta-G solvation = -112.959298 kcal Electronic energy + Delta-G solvation = -24534.905959 eV Core-core repulsion = 20640.932330 eV Total energy + Delta-G solvation = -3893.973630 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 8.64 seconds Orbital eigenvalues (eV) -41.19934 -39.54295 -39.06950 -38.16128 -35.50858 -34.25014 -33.07089 -32.43769 -30.79199 -29.51507 -28.03434 -25.83751 -25.55315 -23.62706 -22.51249 -21.05246 -20.31453 -20.26542 -18.54071 -17.88684 -17.62112 -16.89307 -16.77345 -16.31441 -16.13236 -15.87856 -15.40255 -15.07227 -14.95686 -14.65880 -14.19531 -13.87071 -13.80266 -13.50576 -13.40041 -13.26297 -12.87423 -12.78904 -12.57467 -12.17951 -12.10870 -11.74206 -11.43158 -11.26110 -11.15031 -11.10412 -11.00361 -10.59809 -10.42774 -10.10508 -9.85625 -9.53445 -9.24593 -9.02756 -8.97142 -8.49983 -6.91836 -6.28971 -4.00751 0.94201 1.89935 2.72544 2.76037 2.97270 3.15055 3.30420 3.34451 3.51025 3.64263 3.88289 4.06583 4.09356 4.29746 4.33441 4.65513 4.73208 4.77746 4.87813 4.91680 5.05801 5.10163 5.22447 5.29321 5.32269 5.35756 5.40355 5.51246 5.55363 5.68480 5.75476 5.81568 5.88118 5.96822 6.00784 6.41655 6.50739 6.77171 7.21189 7.51399 7.59234 7.94041 8.41364 8.48504 9.17284 10.80191 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.029182 B = 0.001793 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.255960 B =15611.305463 C =16357.981709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.519 6.519 13 N -0.738 5.738 14 C 0.118 3.882 15 C -0.119 4.119 16 C -0.097 4.097 17 H 0.093 0.907 18 C -0.130 4.130 19 C 0.106 3.894 20 N -0.589 5.589 21 C 0.516 3.484 22 O -0.519 6.519 23 C 0.517 3.483 24 N -0.822 5.822 25 O -0.518 6.518 26 C 0.104 3.896 27 H 0.271 0.729 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.400 0.600 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.411 0.589 40 H 0.415 0.585 41 H 0.088 0.912 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.593 -21.188 -2.285 33.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.315 3.685 12 O -0.393 6.393 13 N -0.393 5.393 14 C -0.007 4.007 15 C -0.157 4.157 16 C -0.117 4.117 17 H 0.111 0.889 18 C -0.168 4.168 19 C -0.016 4.016 20 N -0.323 5.323 21 C 0.299 3.701 22 O -0.395 6.395 23 C 0.295 3.705 24 N -0.389 5.389 25 O -0.394 6.394 26 C -0.017 4.017 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.233 0.767 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.244 0.756 40 H 0.245 0.755 41 H 0.106 0.894 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 26.615 -19.561 -2.205 33.104 hybrid contribution -0.734 -0.586 -0.320 0.992 sum 25.881 -20.148 -2.525 32.896 Atomic orbital electron populations 1.69940 1.05910 1.27764 1.48076 1.24713 0.94454 0.98971 0.93169 0.86733 0.81896 0.83264 0.79953 1.19199 1.19944 1.15918 1.22319 0.88282 0.97536 1.58790 0.89387 1.84806 1.09263 1.00103 1.97425 1.23280 0.94037 1.04377 1.05799 1.20288 0.90594 0.82319 0.75255 1.90708 1.58798 1.42224 1.47616 1.45951 1.07429 1.08075 1.77806 1.21330 0.81670 0.95022 1.02629 1.21741 0.94504 0.95851 1.03643 1.22320 0.95622 0.96081 0.97647 0.88887 1.22805 0.96005 0.95982 1.02046 1.22237 0.97754 0.85948 0.95700 1.48268 1.14762 1.21426 1.47883 1.19733 0.83283 0.86704 0.80409 1.90813 1.81257 1.23801 1.43587 1.20026 0.84404 0.86359 0.79691 1.43524 1.17383 1.26016 1.51944 1.90810 1.81578 1.23735 1.43238 1.22564 0.84617 0.96713 0.97829 0.91946 0.88503 0.88452 0.76655 0.91460 0.91481 0.90600 0.90188 0.89371 0.90041 0.90277 0.90181 0.75596 0.75464 0.89364 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.52 13.97 55.49 0.78 -25.75 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.82 27.74 -169.99 -4.72 17.10 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 7 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 8 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.60 18.55 -107.50 -1.99 -5.60 16 10 C -0.12 -2.36 6.16 36.00 0.22 -2.14 16 11 C 0.53 9.17 7.85 -10.99 -0.09 9.09 16 12 O -0.52 -11.13 15.86 5.55 0.09 -11.04 16 13 N -0.74 -8.64 5.56 -60.29 -0.33 -8.97 16 14 C 0.12 1.14 5.52 -4.04 -0.02 1.12 16 15 C -0.12 -0.67 4.85 -26.73 -0.13 -0.80 16 16 C -0.10 -0.54 3.07 -88.47 -0.27 -0.81 16 17 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 18 C -0.13 -0.57 6.42 -24.89 -0.16 -0.73 16 19 C 0.11 0.67 5.49 -3.06 -0.02 0.65 16 20 N -0.59 -4.87 3.33 -171.02 -0.57 -5.44 16 21 C 0.52 4.95 7.91 -11.59 -0.09 4.85 16 22 O -0.52 -6.20 16.73 5.49 0.09 -6.11 16 23 C 0.52 4.16 8.13 -11.59 -0.09 4.06 16 24 N -0.82 -3.78 8.87 30.90 0.27 -3.51 16 25 O -0.52 -5.09 14.96 5.49 0.08 -5.00 16 26 C 0.10 0.79 5.56 -2.53 -0.01 0.78 16 27 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.10 1.70 8.14 -51.91 -0.42 1.28 16 29 H 0.10 1.71 8.14 -51.91 -0.42 1.28 16 30 H 0.40 3.43 8.47 -40.82 -0.35 3.09 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.73 7.45 -51.93 -0.39 0.34 16 33 H 0.08 0.38 8.10 -51.93 -0.42 -0.04 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.30 8.04 -51.93 -0.42 -0.11 16 37 H 0.08 0.52 7.71 -51.93 -0.40 0.12 16 38 H 0.08 0.54 7.57 -51.93 -0.39 0.15 16 39 H 0.41 1.01 8.93 -40.82 -0.36 0.65 16 40 H 0.41 1.50 8.30 -40.82 -0.34 1.16 16 41 H 0.09 0.79 7.96 -51.93 -0.41 0.38 16 42 H 0.08 0.58 8.01 -51.93 -0.42 0.17 16 LS Contribution 368.75 15.07 5.56 5.56 Total: -1.00 -37.59 368.75 -7.20 -44.79 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -6.01 Total: -0.11 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -0.45 Total: 4.08 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.15 Total: -43.67 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: 0.26 Total: -22.16 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.72 Total: 17.10 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.59 -7.20 -44.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001060280180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.166 kcal (2) G-P(sol) polarization free energy of solvation -37.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.64 seconds