Wall clock time and date at job start Tue Mar 31 2020 06:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86798 * 119.99580 * 2 1 4 4 H 1.48505 * 109.46926 * 269.99149 * 3 2 1 5 5 H 1.48494 * 109.47720 * 29.99250 * 3 2 1 6 6 H 1.48503 * 109.46984 * 149.99845 * 3 2 1 7 7 C 1.38796 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00377 * 0.02562 * 7 2 1 9 9 S 1.76202 * 119.99901 * 180.02562 * 7 2 1 10 10 C 1.80991 * 100.00298 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47366 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00007 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00115 * 179.97438 * 11 10 9 14 14 C 1.46504 * 120.00187 * 180.02562 * 13 11 10 15 15 C 1.52990 * 109.47174 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.47312 * 179.97438 * 15 14 13 17 17 H 1.09001 * 110.88276 * 57.42146 * 16 15 14 18 18 C 1.55151 * 111.04122 * 181.32738 * 16 15 14 19 19 C 1.54333 * 103.02361 * 153.39708 * 18 16 15 20 20 N 1.47028 * 107.26018 * 338.14029 * 19 18 16 21 21 C 1.34777 * 125.64328 * 178.85313 * 20 19 18 22 22 O 1.21353 * 119.99672 * 179.69570 * 21 20 19 23 23 C 1.49446 * 120.00342 * 359.68889 * 21 20 19 24 24 N 1.34777 * 120.00341 * 180.02562 * 23 21 20 25 25 O 1.21353 * 119.99982 * 0.02562 * 23 21 20 26 26 C 1.47419 * 108.70460 * 358.58486 * 20 19 18 27 27 H 0.97002 * 120.00152 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.47331 * 59.99705 * 10 9 7 29 29 H 1.09007 * 109.47402 * 299.99881 * 10 9 7 30 30 H 0.96997 * 120.00196 * 0.02562 * 13 11 10 31 31 H 1.08998 * 109.47151 * 59.99606 * 14 13 11 32 32 H 1.09007 * 109.46694 * 300.00320 * 14 13 11 33 33 H 1.08998 * 109.47796 * 59.99520 * 15 14 13 34 34 H 1.09007 * 109.47179 * 299.99543 * 15 14 13 35 35 H 1.09005 * 110.72237 * 271.95327 * 18 16 15 36 36 H 1.09001 * 110.72142 * 35.04982 * 18 16 15 37 37 H 1.09000 * 109.99048 * 218.67168 * 19 18 16 38 38 H 1.09001 * 109.78176 * 97.49481 * 19 18 16 39 39 H 0.97001 * 120.00485 * 180.02562 * 24 23 21 40 40 H 0.97005 * 119.99790 * 359.72222 * 24 23 21 41 41 H 1.09005 * 110.36505 * 143.19314 * 26 20 19 42 42 H 1.08994 * 110.37059 * 265.40650 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6528 0.6998 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0867 -2.9844 0.0025 11 6 5.5732 -3.2323 0.0026 12 8 6.3442 -2.2961 0.0024 13 7 6.0459 -4.4945 0.0041 14 6 7.4909 -4.7356 0.0048 15 6 7.7566 -6.2422 0.0057 16 6 9.2658 -6.4940 0.0058 17 1 9.7393 -6.0165 0.8636 18 6 9.5770 -8.0136 -0.0267 19 6 10.9664 -8.0698 -0.6963 20 7 11.1346 -6.8232 -1.4575 21 6 12.2267 -6.4780 -2.1678 22 8 12.2534 -5.4216 -2.7644 23 6 13.4048 -7.3960 -2.2206 24 7 14.4971 -7.0505 -2.9305 25 8 13.3779 -8.4526 -1.6243 26 6 9.9084 -6.0165 -1.3203 27 1 -0.4850 0.8400 -0.0004 28 1 3.6441 -3.4321 -0.8873 29 1 3.6435 -3.4309 0.8927 30 1 5.4293 -5.2433 0.0047 31 1 7.9336 -4.2875 0.8944 32 1 7.9341 -4.2893 -0.8856 33 1 7.3140 -6.6899 -0.8840 34 1 7.3134 -6.6888 0.8959 35 1 9.6165 -8.4210 0.9836 36 1 8.8389 -8.5457 -0.6269 37 1 11.0213 -8.9254 -1.3694 38 1 11.7409 -8.1455 0.0669 39 1 15.2616 -7.6465 -2.9651 40 1 14.5170 -6.2078 -3.4105 41 1 10.1562 -4.9566 -1.2617 42 1 9.2363 -6.2024 -2.1580 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001060280180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:09 Heat of formation + Delta-G solvation = -144.406072 kcal Electronic energy + Delta-G solvation = -24536.269594 eV Core-core repulsion = 20640.932330 eV Total energy + Delta-G solvation = -3895.337264 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.84734 -40.65888 -39.84794 -38.88151 -36.44969 -34.83622 -34.66559 -33.89578 -31.69740 -30.49977 -28.84641 -27.84557 -26.48036 -24.28945 -23.10573 -21.96986 -21.17123 -20.90941 -19.85461 -19.11751 -18.25955 -17.85878 -17.49195 -17.31599 -17.18829 -16.98425 -16.87941 -16.37127 -15.69142 -15.66174 -15.44313 -14.94564 -14.82468 -14.71021 -14.44270 -14.13562 -14.01126 -13.60462 -13.43322 -13.33749 -13.12143 -13.00801 -12.82637 -12.65167 -12.37615 -12.00262 -11.85076 -11.66227 -11.57331 -11.16743 -10.97305 -10.93716 -10.79226 -10.52153 -10.09878 -9.89547 -8.98880 -8.51127 -6.21710 0.26640 1.00447 1.30641 1.31600 1.47549 1.57086 1.59302 2.05142 2.23890 2.28532 2.61306 2.73551 2.87185 3.38988 3.54003 3.59137 3.79990 3.91084 4.15790 4.22251 4.27598 4.32506 4.41436 4.48684 4.50381 4.64958 4.74548 4.86847 4.89974 4.95271 5.07953 5.14934 5.23560 5.39550 5.46523 5.52513 5.71285 5.91031 6.11971 6.15638 6.51736 6.60422 6.94353 6.96534 7.23973 8.61098 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.029182 B = 0.001793 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.255960 B =15611.305463 C =16357.981709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.046 3.954 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.238 1.238 7 C -0.528 4.528 8 H 0.064 0.936 9 S -0.181 6.181 10 C -0.111 4.111 11 C 0.532 3.468 12 O -0.567 6.567 13 N -0.710 5.710 14 C 0.114 3.886 15 C -0.105 4.105 16 C -0.089 4.089 17 H 0.092 0.908 18 C -0.118 4.118 19 C 0.103 3.897 20 N -0.589 5.589 21 C 0.507 3.493 22 O -0.552 6.552 23 C 0.518 3.482 24 N -0.802 5.802 25 O -0.539 6.539 26 C 0.098 3.902 27 H 0.277 0.723 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.419 0.581 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.424 0.576 40 H 0.421 0.579 41 H 0.067 0.933 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.546 -23.045 -1.902 35.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.159 4.159 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.183 1.183 6 H -0.161 1.161 7 C -0.676 4.676 8 H 0.082 0.918 9 S 0.046 5.954 10 C -0.262 4.262 11 C 0.317 3.683 12 O -0.445 6.445 13 N -0.364 5.364 14 C -0.009 4.009 15 C -0.143 4.143 16 C -0.108 4.108 17 H 0.110 0.890 18 C -0.156 4.156 19 C -0.018 4.018 20 N -0.322 5.322 21 C 0.290 3.710 22 O -0.431 6.431 23 C 0.296 3.704 24 N -0.369 5.369 25 O -0.416 6.416 26 C -0.024 4.024 27 H 0.086 0.914 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.256 0.744 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.259 0.741 40 H 0.253 0.747 41 H 0.085 0.915 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 27.574 -21.493 -1.821 35.009 hybrid contribution -0.969 -0.170 -0.466 1.089 sum 26.605 -21.663 -2.287 34.386 Atomic orbital electron populations 1.70015 1.07244 1.28983 1.49183 1.25547 0.95265 1.02194 0.92939 0.85880 0.80683 0.79721 0.80167 1.18796 1.18335 1.16147 1.22463 0.90213 0.96716 1.58167 0.91812 1.84763 1.06482 1.06610 1.97594 1.23279 0.95986 0.99345 1.07575 1.19988 0.89362 0.83585 0.75329 1.90699 1.59414 1.44059 1.50374 1.45719 1.08919 1.06663 1.75137 1.21505 0.79751 0.98020 1.01643 1.21670 0.94578 0.92563 1.05452 1.22255 0.95308 0.97056 0.96206 0.88963 1.22802 0.94766 0.94844 1.03169 1.22365 0.99079 0.84947 0.95441 1.48447 1.14531 1.22056 1.47191 1.20109 0.84057 0.86584 0.80206 1.90788 1.82000 1.25144 1.45157 1.19835 0.84655 0.85860 0.80083 1.43421 1.16742 1.26289 1.50467 1.90800 1.81983 1.24358 1.44498 1.22658 0.84677 0.95695 0.99355 0.91390 0.86769 0.86616 0.74352 0.92350 0.92810 0.89075 0.88028 0.87461 0.88608 0.90372 0.90579 0.74124 0.74701 0.91453 0.89941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.64 13.97 21.65 0.30 -55.34 16 2 C 0.05 2.70 5.50 84.86 0.47 3.16 16 3 Si 0.91 45.14 27.74 68.60 1.90 47.04 16 4 H -0.26 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 6 H -0.24 -11.75 6.74 99.48 0.67 -11.08 16 7 C -0.53 -30.61 10.04 67.95 0.68 -29.93 16 8 H 0.06 3.88 8.03 -2.91 -0.02 3.85 16 9 S -0.18 -9.12 18.55 -56.49 -1.05 -10.17 16 10 C -0.11 -4.05 6.16 71.24 0.44 -3.61 16 11 C 0.53 17.62 7.85 87.66 0.69 18.31 16 12 O -0.57 -24.11 15.86 -3.05 -0.05 -24.16 16 13 N -0.71 -14.74 5.56 -463.06 -2.57 -17.31 16 14 C 0.11 1.98 5.52 86.38 0.48 2.46 16 15 C -0.10 -0.81 4.85 30.59 0.15 -0.67 16 16 C -0.09 -0.76 3.07 -9.40 -0.03 -0.79 16 17 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 18 C -0.12 -0.64 6.42 31.78 0.20 -0.44 16 19 C 0.10 1.14 5.49 86.73 0.48 1.62 16 20 N -0.59 -9.40 3.33 -813.35 -2.70 -12.10 16 21 C 0.51 9.75 7.91 87.27 0.69 10.44 16 22 O -0.55 -13.55 16.73 -3.26 -0.05 -13.60 16 23 C 0.52 8.09 8.13 87.27 0.71 8.79 16 24 N -0.80 -6.71 8.87 -174.50 -1.55 -8.26 16 25 O -0.54 -10.21 14.96 -3.26 -0.05 -10.26 16 26 C 0.10 1.40 5.56 86.86 0.48 1.89 16 27 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 28 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 29 H 0.12 3.81 8.14 -2.39 -0.02 3.79 16 30 H 0.42 5.58 8.47 -92.71 -0.79 4.79 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 1.12 7.45 -2.38 -0.02 1.10 16 33 H 0.09 0.52 8.10 -2.39 -0.02 0.50 16 34 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 35 H 0.11 0.26 8.14 -2.38 -0.02 0.24 16 36 H 0.10 0.31 8.04 -2.39 -0.02 0.29 16 37 H 0.08 0.91 7.71 -2.39 -0.02 0.89 16 38 H 0.08 0.92 7.57 -2.39 -0.02 0.90 16 39 H 0.42 1.56 8.93 -92.71 -0.83 0.73 16 40 H 0.42 2.76 8.30 -92.70 -0.77 1.99 16 41 H 0.07 1.25 7.96 -2.38 -0.02 1.23 16 42 H 0.08 1.12 8.01 -2.39 -0.02 1.10 16 Total: -1.00 -83.20 368.75 -1.72 -84.92 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -1.34 Total: 8.00 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 5.44 Total: 11.24 kcal Atomic # 7 Polarization: -86.49 SS G_CDS: -6.52 Total: -93.01 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -0.15 Total: -48.02 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.04 kcal Atomic # 16 Polarization: -9.12 SS G_CDS: -1.05 Total: -10.17 kcal Total: -83.20 -1.72 -84.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001060280180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.486 kcal (2) G-P(sol) polarization free energy of solvation -83.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds