Wall clock time and date at job start Tue Mar 31 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 119.99900 * 2 1 4 4 H 1.48497 * 109.47099 * 239.99956 * 3 2 1 5 5 H 1.48497 * 109.47120 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46878 * 119.99921 * 3 2 1 7 7 C 1.38793 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00368 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00225 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00324 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47175 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00003 * 180.02562 * 11 10 9 14 14 C 1.46928 * 120.62815 * 5.56637 * 13 11 10 15 15 C 1.53195 * 108.77313 * 233.60763 * 14 13 11 16 16 C 1.53034 * 109.31810 * 305.36767 * 15 14 13 17 17 C 1.53043 * 109.53696 * 61.36131 * 16 15 14 18 18 C 1.46925 * 120.63431 * 185.57026 * 13 11 10 19 19 H 1.08996 * 109.58650 * 246.18076 * 18 13 11 20 20 C 1.53007 * 109.70021 * 6.53235 * 18 13 11 21 21 N 1.46495 * 109.47130 * 178.26568 * 20 18 13 22 22 C 1.34773 * 120.00225 * 185.03258 * 21 20 18 23 23 O 1.21351 * 119.99918 * 359.97438 * 22 21 20 24 24 C 1.49452 * 120.00169 * 179.97438 * 22 21 20 25 25 N 1.34773 * 119.99804 * 180.02562 * 24 22 21 26 26 O 1.21343 * 119.99721 * 359.97438 * 24 22 21 27 27 H 0.96999 * 120.00343 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47030 * 60.00164 * 10 9 7 29 29 H 1.08996 * 109.47409 * 299.99945 * 10 9 7 30 30 H 1.08997 * 109.58516 * 113.82839 * 14 13 11 31 31 H 1.08993 * 109.58920 * 353.39609 * 14 13 11 32 32 H 1.09004 * 109.49991 * 65.32596 * 15 14 13 33 33 H 1.09008 * 109.49765 * 185.37926 * 15 14 13 34 34 H 1.09000 * 109.46459 * 181.38441 * 16 15 14 35 35 H 1.09004 * 109.45683 * 301.35959 * 16 15 14 36 36 H 1.08998 * 109.49163 * 58.59491 * 17 16 15 37 37 H 1.09000 * 109.49745 * 178.65071 * 17 16 15 38 38 H 1.09005 * 109.46997 * 298.26242 * 20 18 13 39 39 H 1.08996 * 109.47220 * 58.26083 * 20 18 13 40 40 H 0.97001 * 120.00134 * 5.03133 * 21 20 18 41 41 H 0.97005 * 120.00538 * 359.97438 * 25 24 22 42 42 H 0.97002 * 120.00312 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0019 10 6 2.5158 -3.8914 -0.0029 11 6 1.9873 -5.3028 -0.0036 12 8 0.7910 -5.5023 -0.0038 13 7 2.8440 -6.3431 -0.0039 14 6 4.2912 -6.1211 0.1190 15 6 4.9983 -6.8232 -1.0446 16 6 4.5886 -8.2974 -1.0706 17 6 3.0775 -8.4049 -1.2880 18 6 2.3487 -7.7209 -0.1272 19 1 2.5442 -8.2636 0.7976 20 6 0.8440 -7.7051 -0.4043 21 7 0.3631 -9.0792 -0.5674 22 6 -0.9173 -9.3076 -0.9206 23 8 -1.6720 -8.3750 -1.1031 24 6 -1.4078 -10.7095 -1.0876 25 7 -2.6881 -10.9378 -1.4412 26 8 -0.6530 -11.6420 -0.9055 27 1 -0.4850 0.8400 0.0004 28 1 3.1244 -3.7321 0.8872 29 1 3.1245 -3.7306 -0.8927 30 1 4.6452 -6.5335 1.0639 31 1 4.5013 -5.0522 0.0829 32 1 4.7119 -6.3493 -1.9835 33 1 6.0778 -6.7473 -0.9134 34 1 5.1093 -8.8048 -1.8827 35 1 4.8528 -8.7645 -0.1218 36 1 2.8092 -7.9162 -2.2247 37 1 2.7898 -9.4554 -1.3304 38 1 0.3255 -7.2355 0.4316 39 1 0.6484 -7.1410 -1.3163 40 1 0.9662 -9.8247 -0.4213 41 1 -3.2914 -10.1923 -1.5871 42 1 -3.0066 -11.8476 -1.5493 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062018729.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:18 Heat of formation + Delta-G solvation = -97.545488 kcal Electronic energy + Delta-G solvation = -26017.725282 eV Core-core repulsion = 22124.420045 eV Total energy + Delta-G solvation = -3893.305237 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 9.05 seconds Orbital eigenvalues (eV) -40.86417 -40.23526 -38.41412 -37.32084 -35.47395 -33.84918 -32.96544 -32.43458 -31.78536 -29.10834 -27.36783 -25.52503 -24.92560 -24.33453 -22.09135 -21.17190 -20.58958 -19.30779 -18.66090 -17.72179 -17.41946 -16.65388 -16.38534 -16.06879 -15.77949 -15.44503 -14.90638 -14.80778 -14.56725 -14.55453 -14.22380 -13.95932 -13.84570 -13.65777 -13.41904 -13.04167 -12.59070 -12.48478 -12.04591 -11.93843 -11.86613 -11.36426 -11.19747 -11.06825 -11.04616 -10.95586 -10.83064 -10.76550 -10.17944 -9.85961 -9.82260 -9.36280 -9.06549 -8.88229 -8.54719 -8.23598 -6.50752 -6.21859 -3.92814 1.28301 2.28670 2.85469 2.93656 3.10084 3.22818 3.23664 3.28377 3.51566 3.81000 4.19312 4.35291 4.42404 4.52339 4.60118 4.78120 4.92458 4.99661 5.04446 5.13091 5.24730 5.40421 5.48733 5.55379 5.59161 5.73013 5.77576 5.80847 5.82658 5.95575 6.06343 6.11612 6.13587 6.16089 6.21390 6.59206 6.67785 7.16955 7.44399 7.58452 7.62601 7.89628 8.34130 8.46675 9.23139 10.85387 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014147 B = 0.003046 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.796139 B = 9188.799531 C =10988.414200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.057 6.057 10 C -0.151 4.151 11 C 0.533 3.467 12 O -0.504 6.504 13 N -0.614 5.614 14 C 0.109 3.891 15 C -0.138 4.138 16 C -0.117 4.117 17 C -0.135 4.135 18 C 0.139 3.861 19 H 0.076 0.924 20 C 0.118 3.882 21 N -0.702 5.702 22 C 0.500 3.500 23 O -0.506 6.506 24 C 0.516 3.484 25 N -0.823 5.823 26 O -0.529 6.529 27 H 0.269 0.731 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.404 0.596 41 H 0.416 0.584 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.467 -21.610 -2.016 22.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.169 5.831 10 C -0.302 4.302 11 C 0.322 3.678 12 O -0.378 6.378 13 N -0.351 5.351 14 C -0.014 4.014 15 C -0.176 4.176 16 C -0.155 4.155 17 C -0.174 4.174 18 C 0.035 3.965 19 H 0.094 0.906 20 C -0.003 4.003 21 N -0.358 5.358 22 C 0.279 3.721 23 O -0.381 6.381 24 C 0.294 3.706 25 N -0.389 5.389 26 O -0.404 6.404 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.129 0.871 39 H 0.106 0.894 40 H 0.240 0.760 41 H 0.246 0.754 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 4.600 -21.520 -1.980 22.095 hybrid contribution 1.983 0.865 -0.098 2.165 sum 6.582 -20.654 -2.079 21.777 Atomic orbital electron populations 1.70005 1.05938 1.27590 1.46655 1.24984 0.95016 0.99000 0.94531 0.86235 0.79248 0.81305 0.78776 1.19951 1.20813 1.19950 1.22811 0.94826 0.91681 1.59173 0.91022 1.85451 1.04652 0.96256 1.96698 1.23579 1.06627 0.95240 1.04726 1.20462 0.86307 0.86264 0.74804 1.90724 1.15242 1.83956 1.47892 1.48123 1.07131 1.04792 1.75082 1.21756 0.79199 1.02122 0.98287 1.21948 1.00282 0.95917 0.99440 1.21493 0.95364 0.96511 1.02143 1.22061 0.95703 1.00700 0.98920 1.21330 0.93320 0.83390 0.98487 0.90565 1.22493 0.92497 0.79401 1.05894 1.46112 1.10902 1.10763 1.68017 1.19910 0.83471 0.89106 0.79581 1.90856 1.54863 1.44254 1.48116 1.20287 0.83204 0.89890 0.77176 1.43543 1.11639 1.13267 1.70442 1.90788 1.55369 1.44963 1.49325 0.92104 0.89260 0.89202 0.91309 0.88886 0.91167 0.90617 0.91550 0.91686 0.90973 0.90821 0.87121 0.89442 0.76045 0.75367 0.75864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.04 13.22 55.49 0.73 -25.31 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.24 29.55 -169.99 -5.02 16.21 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 7 C -0.54 -15.08 9.50 30.94 0.29 -14.78 16 8 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 9 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 10 C -0.15 -2.95 4.51 36.01 0.16 -2.78 16 11 C 0.53 9.50 7.55 -10.98 -0.08 9.42 16 12 O -0.50 -10.66 11.43 5.56 0.06 -10.60 16 13 N -0.61 -7.99 2.97 -165.22 -0.49 -8.48 16 14 C 0.11 1.08 6.35 -3.71 -0.02 1.05 16 15 C -0.14 -1.11 6.08 -26.61 -0.16 -1.27 16 16 C -0.12 -0.87 5.88 -26.69 -0.16 -1.02 16 17 C -0.14 -1.20 5.10 -26.61 -0.14 -1.34 16 18 C 0.14 1.55 3.06 -67.60 -0.21 1.34 16 19 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 20 C 0.12 1.66 3.56 -4.04 -0.01 1.64 16 21 N -0.70 -8.21 5.22 -60.73 -0.32 -8.52 16 22 C 0.50 6.53 7.89 -11.59 -0.09 6.44 16 23 O -0.51 -8.34 16.47 5.50 0.09 -8.25 16 24 C 0.52 5.61 8.16 -11.59 -0.09 5.52 16 25 N -0.82 -6.05 8.87 30.90 0.27 -5.78 16 26 O -0.53 -6.67 17.31 5.50 0.10 -6.57 16 27 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.09 1.60 7.71 -51.92 -0.40 1.20 16 29 H 0.09 1.63 7.92 -51.92 -0.41 1.22 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.95 5.93 -51.93 -0.31 0.65 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.49 8.14 -51.92 -0.42 0.06 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.55 7.09 -51.93 -0.37 0.18 16 38 H 0.11 1.90 6.24 -51.93 -0.32 1.58 16 39 H 0.09 1.48 7.24 -51.93 -0.38 1.10 16 40 H 0.40 3.80 6.94 -40.82 -0.28 3.52 16 41 H 0.42 2.74 8.30 -40.82 -0.34 2.40 16 42 H 0.41 2.02 8.93 -40.82 -0.36 1.66 16 LS Contribution 359.49 15.07 5.42 5.42 Total: -1.00 -36.04 359.49 -7.65 -43.70 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.68 Total: 5.71 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -0.61 Total: 6.21 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.20 Total: -48.09 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: 0.25 Total: -25.42 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.04 -7.65 -43.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062018729.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.849 kcal (2) G-P(sol) polarization free energy of solvation -36.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.05 seconds