Wall clock time and date at job start Tue Mar 31 2020 06:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 120.00063 * 2 1 4 4 H 1.48501 * 109.47087 * 269.99933 * 3 2 1 5 5 H 1.48502 * 109.46972 * 29.99613 * 3 2 1 6 6 H 1.48496 * 109.47339 * 149.99860 * 3 2 1 7 7 C 1.38801 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99843 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00327 * 0.02562 * 7 2 1 10 10 C 1.80999 * 99.99999 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47049 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99987 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99839 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99774 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47074 * 184.66413 * 14 13 11 16 16 H 1.08995 * 109.58757 * 47.79643 * 15 14 13 17 17 C 1.53197 * 109.58472 * 168.08425 * 15 14 13 18 18 C 1.53038 * 109.30983 * 174.56187 * 17 15 14 19 19 C 1.53039 * 109.53940 * 298.63329 * 18 17 15 20 20 C 1.53195 * 109.31353 * 61.36714 * 19 18 17 21 21 N 1.46926 * 109.70006 * 287.44118 * 15 14 13 22 22 C 1.34774 * 120.63240 * 6.53840 * 21 15 14 23 23 O 1.21352 * 119.99941 * 1.22322 * 22 21 15 24 24 C 1.49449 * 120.00226 * 181.22568 * 22 21 15 25 25 N 1.34777 * 120.00513 * 173.44395 * 24 22 21 26 26 O 1.21351 * 119.99818 * 353.44394 * 24 22 21 27 27 H 0.97000 * 120.00267 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.47431 * 60.00386 * 10 9 7 29 29 H 1.08999 * 109.47361 * 299.99768 * 10 9 7 30 30 H 0.96996 * 120.00545 * 0.02562 * 13 11 10 31 31 H 1.08999 * 109.47052 * 64.65984 * 14 13 11 32 32 H 1.08998 * 109.47279 * 304.66187 * 14 13 11 33 33 H 1.09001 * 109.49574 * 54.61574 * 17 15 14 34 34 H 1.08996 * 109.52637 * 294.52644 * 17 15 14 35 35 H 1.09006 * 109.46071 * 178.61506 * 18 17 15 36 36 H 1.09004 * 109.45239 * 58.64933 * 18 17 15 37 37 H 1.08998 * 109.50271 * 301.41540 * 19 18 17 38 38 H 1.08999 * 109.52854 * 181.33388 * 19 18 17 39 39 H 1.08998 * 109.58749 * 65.15019 * 20 19 18 40 40 H 1.08999 * 109.58583 * 185.57858 * 20 19 18 41 41 H 0.97002 * 119.99199 * 359.97438 * 25 24 22 42 42 H 0.96994 * 120.00383 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3431 -0.0007 14 6 2.3305 -7.7150 -0.0008 15 6 3.4982 -8.6968 0.1158 16 1 4.1622 -8.3811 0.9204 17 6 2.9613 -10.1003 0.4138 18 6 4.1198 -11.1000 0.3947 19 6 4.7615 -11.1134 -0.9946 20 6 5.3189 -9.7214 -1.3086 21 7 4.2421 -8.7342 -1.1507 22 6 3.9426 -7.8793 -2.1486 23 8 3.0660 -7.0538 -1.9977 24 6 4.6900 -7.9478 -3.4409 25 7 4.3051 -7.1852 -4.4834 26 8 5.6436 -8.6901 -3.5517 27 1 -0.4850 0.8400 -0.0004 28 1 3.1245 -3.7314 0.8905 29 1 3.1245 -3.7313 -0.8894 30 1 3.8010 -6.1835 -0.0004 31 1 1.7908 -7.9009 -0.9293 32 1 1.6562 -7.8506 0.8448 33 1 2.2286 -10.3781 -0.3440 34 1 2.4896 -10.1089 1.3964 35 1 3.7443 -12.0957 0.6308 36 1 4.8639 -10.8075 1.1356 37 1 4.0120 -11.3816 -1.7391 38 1 5.5715 -11.8426 -1.0148 39 1 6.1313 -9.4892 -0.6201 40 1 5.6882 -9.6985 -2.3339 41 1 3.5426 -6.5921 -4.3949 42 1 4.7900 -7.2299 -5.3222 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062332579.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:48 Heat of formation + Delta-G solvation = -62.580427 kcal Electronic energy + Delta-G solvation = -26508.368452 eV Core-core repulsion = 22616.579414 eV Total energy + Delta-G solvation = -3891.789038 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.52140 -39.48907 -38.43524 -37.82695 -34.45514 -34.29203 -33.02762 -32.37513 -31.76267 -29.22524 -27.05276 -25.50960 -25.08339 -24.38038 -22.40744 -21.18005 -20.32601 -19.81277 -18.13649 -17.65608 -17.43869 -16.51674 -16.33942 -15.99998 -15.91426 -15.64123 -15.14415 -14.90218 -14.75837 -14.41637 -14.28412 -13.91931 -13.87891 -13.48715 -13.22835 -13.01985 -12.79604 -12.50897 -12.43025 -11.89715 -11.61902 -11.46404 -11.31539 -11.06643 -11.02560 -10.96239 -10.71384 -10.46549 -10.20201 -9.74361 -9.30920 -9.06335 -9.04586 -9.01183 -8.34758 -8.13734 -6.41447 -6.16155 -3.85189 1.13628 2.11189 2.91283 3.16981 3.25024 3.31424 3.34072 3.38206 3.42707 3.87795 4.12076 4.26351 4.36515 4.49198 4.53465 4.72558 4.84326 4.90709 5.10926 5.18585 5.30555 5.35968 5.43800 5.48143 5.53735 5.64095 5.69118 5.71162 5.77403 5.92961 5.99861 6.03286 6.20762 6.26733 6.41328 6.61093 6.88360 6.93302 7.51202 7.64724 7.74213 7.96370 8.40730 8.90071 9.28971 10.91266 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018763 B = 0.002885 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.933892 B = 9704.712817 C =10588.557701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.071 0.929 9 S -0.060 6.060 10 C -0.150 4.150 11 C 0.538 3.462 12 O -0.526 6.526 13 N -0.708 5.708 14 C 0.132 3.868 15 C 0.132 3.868 16 H 0.084 0.916 17 C -0.127 4.127 18 C -0.121 4.121 19 C -0.133 4.133 20 C 0.049 3.951 21 N -0.579 5.579 22 C 0.487 3.513 23 O -0.478 6.478 24 C 0.517 3.483 25 N -0.816 5.816 26 O -0.520 6.520 27 H 0.267 0.733 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.390 0.610 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.158 0.842 41 H 0.418 0.582 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.828 -23.693 -4.226 27.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.682 4.682 8 H 0.089 0.911 9 S 0.166 5.834 10 C -0.300 4.300 11 C 0.324 3.676 12 O -0.402 6.402 13 N -0.361 5.361 14 C 0.007 3.993 15 C 0.029 3.971 16 H 0.102 0.898 17 C -0.166 4.166 18 C -0.159 4.159 19 C -0.172 4.172 20 C -0.072 4.072 21 N -0.315 5.315 22 C 0.269 3.731 23 O -0.351 6.351 24 C 0.298 3.702 25 N -0.381 5.381 26 O -0.398 6.398 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.223 0.777 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.174 0.826 41 H 0.250 0.750 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 10.731 -23.973 -4.035 26.573 hybrid contribution 2.391 1.539 -0.257 2.855 sum 13.122 -22.433 -4.292 26.341 Atomic orbital electron populations 1.70023 1.05922 1.27321 1.47098 1.24982 0.95009 0.98950 0.94685 0.86187 0.79421 0.81702 0.78288 1.20334 1.20788 1.19747 1.22886 0.94885 0.91856 1.58598 0.91089 1.85362 1.05226 0.96110 1.96656 1.23488 1.06206 0.95929 1.04414 1.20029 0.86438 0.85973 0.75178 1.90667 1.15417 1.85602 1.48495 1.45753 1.09093 1.05040 1.76256 1.21400 0.94443 0.80689 1.02733 1.21709 0.93766 0.96406 0.85248 0.89835 1.21894 0.98482 0.93124 1.03052 1.21554 0.97650 0.99291 0.97412 1.21912 1.00903 0.97105 0.97237 1.23311 0.88227 0.86449 1.09221 1.47962 1.35390 1.34316 1.13830 1.20022 0.85195 0.82874 0.85053 1.91084 1.29300 1.34864 1.79814 1.20394 0.83981 0.80048 0.85823 1.43599 1.35885 1.44107 1.14501 1.90331 1.28755 1.38358 1.82371 0.92269 0.89797 0.89626 0.77747 0.89771 0.91498 0.90942 0.89992 0.91445 0.91637 0.91677 0.90641 0.91608 0.82624 0.75039 0.75680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.62 13.22 55.49 0.73 -25.89 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.76 29.55 -169.99 -5.02 16.73 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.53 -15.59 9.50 30.94 0.29 -15.30 16 8 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.15 -3.22 6.16 36.01 0.22 -3.00 16 11 C 0.54 10.85 7.55 -10.98 -0.08 10.77 16 12 O -0.53 -12.73 15.86 5.56 0.09 -12.65 16 13 N -0.71 -10.58 3.21 -60.29 -0.19 -10.77 16 14 C 0.13 1.68 4.30 -4.04 -0.02 1.66 16 15 C 0.13 1.18 2.90 -67.60 -0.20 0.99 16 16 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 17 C -0.13 -0.91 5.34 -26.61 -0.14 -1.05 16 18 C -0.12 -0.71 5.88 -26.69 -0.16 -0.87 16 19 C -0.13 -0.84 6.08 -26.61 -0.16 -1.00 16 20 C 0.05 0.38 6.22 -3.71 -0.02 0.35 16 21 N -0.58 -5.32 2.97 -165.72 -0.49 -5.81 16 22 C 0.49 5.29 7.37 -11.59 -0.09 5.21 16 23 O -0.48 -6.51 10.24 5.50 0.06 -6.45 16 24 C 0.52 5.03 8.07 -11.59 -0.09 4.93 16 25 N -0.82 -5.92 8.87 30.90 0.27 -5.65 16 26 O -0.52 -5.60 13.85 5.50 0.08 -5.53 16 27 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.08 1.68 8.14 -51.92 -0.42 1.25 16 29 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 30 H 0.39 5.04 8.07 -40.82 -0.33 4.71 16 31 H 0.08 1.25 6.29 -51.93 -0.33 0.93 16 32 H 0.07 0.89 8.09 -51.93 -0.42 0.46 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.16 1.41 3.79 -56.96 -0.22 1.19 16 41 H 0.42 3.05 8.32 -40.82 -0.34 2.71 16 42 H 0.41 2.08 8.93 -40.82 -0.36 1.72 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -36.75 355.58 -7.64 -44.39 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.77 Total: 5.45 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -0.54 Total: 4.72 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: 0.32 Total: -48.12 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: 0.22 Total: -24.63 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.75 -7.64 -44.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062332579.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.192 kcal (2) G-P(sol) polarization free energy of solvation -36.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds