Wall clock time and date at job start Tue Mar 31 2020 05:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86797 * 119.99824 * 2 1 4 4 H 1.48494 * 109.47474 * 270.00922 * 3 2 1 5 5 H 1.48508 * 109.46992 * 30.01068 * 3 2 1 6 6 H 1.48506 * 109.46824 * 150.00549 * 3 2 1 7 7 C 1.38796 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00126 * 359.97438 * 7 2 1 9 9 S 1.76195 * 119.99954 * 179.97438 * 7 2 1 10 10 C 1.80998 * 100.00090 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.47066 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00267 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99915 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00333 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47348 * 174.95954 * 14 13 11 16 16 N 1.46502 * 112.84967 * 311.52135 * 15 14 13 17 17 C 1.34776 * 119.99769 * 294.02400 * 16 15 14 18 18 O 1.21280 * 120.00188 * 354.96824 * 17 16 15 19 19 C 1.50706 * 119.99816 * 174.69679 * 17 16 15 20 20 C 1.50702 * 109.47197 * 179.97438 * 19 17 16 21 21 N 1.34772 * 119.99787 * 180.02562 * 20 19 17 22 22 O 1.21277 * 119.99766 * 0.02562 * 20 19 17 23 23 C 1.53780 * 113.68960 * 82.79012 * 15 14 13 24 24 C 1.53787 * 87.07957 * 139.99289 * 23 15 14 25 25 C 1.53777 * 87.08069 * 334.56550 * 24 23 15 26 26 H 0.97004 * 120.00043 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46876 * 59.99991 * 10 9 7 28 28 H 1.08999 * 109.47161 * 299.99419 * 10 9 7 29 29 H 0.97007 * 120.00133 * 0.02562 * 13 11 10 30 30 H 1.08996 * 109.46559 * 54.95550 * 14 13 11 31 31 H 1.09003 * 109.46764 * 294.96345 * 14 13 11 32 32 H 0.96997 * 120.00310 * 114.02731 * 16 15 14 33 33 H 1.09000 * 109.46865 * 300.00081 * 19 17 16 34 34 H 1.09001 * 109.46779 * 59.99742 * 19 17 16 35 35 H 0.96997 * 120.00249 * 359.97438 * 21 20 19 36 36 H 0.96998 * 120.00181 * 180.02562 * 21 20 19 37 37 H 1.09001 * 113.61444 * 254.53644 * 23 15 14 38 38 H 1.09000 * 113.61699 * 25.44262 * 23 15 14 39 39 H 1.09003 * 113.60967 * 220.01792 * 24 23 15 40 40 H 1.08998 * 113.61533 * 89.11421 * 24 23 15 41 41 H 1.09003 * 113.61592 * 270.88651 * 25 24 23 42 42 H 1.09005 * 113.61427 * 139.98017 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4477 2.6526 0.7003 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0866 -2.9845 -0.0009 11 6 5.5732 -3.2324 -0.0021 12 8 6.3441 -2.2962 -0.0035 13 7 6.0458 -4.4946 -0.0016 14 6 7.4909 -4.7357 -0.0033 15 6 7.7576 -6.2368 0.1245 16 7 6.9916 -6.8607 1.2062 17 6 7.2417 -6.5275 2.4880 18 8 8.1605 -5.7813 2.7524 19 6 6.3759 -7.0774 3.5922 20 6 6.8634 -6.5564 4.9196 21 7 6.2369 -6.9182 6.0567 22 8 7.8194 -5.8115 4.9645 23 6 7.6693 -6.9958 -1.2101 24 6 8.8899 -7.8048 -0.7404 25 6 9.2524 -6.5976 0.1405 26 1 -0.4850 0.8401 0.0004 27 1 3.6434 -3.4317 -0.8906 28 1 3.6441 -3.4313 0.8894 29 1 5.4292 -5.2434 -0.0009 30 1 7.9474 -4.2127 0.8370 31 1 7.9193 -4.3685 -0.9359 32 1 6.3045 -7.5135 1.0001 33 1 5.3439 -6.7637 3.4350 34 1 6.4294 -8.1661 3.5877 35 1 5.4721 -7.5137 6.0207 36 1 6.5504 -6.5826 6.9110 37 1 6.7633 -7.5929 -1.3136 38 1 7.8680 -6.3717 -2.0814 39 1 9.6139 -8.0013 -1.5312 40 1 8.6296 -8.6976 -0.1720 41 1 9.8840 -5.8646 -0.3615 42 1 9.6245 -6.8733 1.1273 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062579618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:04 Heat of formation + Delta-G solvation = -88.036363 kcal Electronic energy + Delta-G solvation = -25889.656592 eV Core-core repulsion = 21996.763702 eV Total energy + Delta-G solvation = -3892.892890 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 4.47 seconds Orbital eigenvalues (eV) -41.08983 -39.76695 -38.85340 -37.82182 -34.29152 -33.98813 -33.36922 -32.43195 -30.64392 -29.90703 -27.28673 -26.12806 -25.59288 -23.30899 -22.01763 -20.60743 -20.25204 -19.48023 -17.97664 -17.89076 -17.42473 -16.65835 -16.43777 -16.23221 -16.04607 -15.52979 -15.16340 -15.12433 -14.93091 -14.36774 -14.05291 -13.82255 -13.67476 -13.64778 -13.32723 -12.92582 -12.77369 -12.69691 -12.44259 -12.11619 -11.75502 -11.28919 -11.26123 -11.15971 -10.99425 -10.71962 -10.58816 -10.35964 -9.91663 -9.84559 -9.61921 -9.50323 -9.24289 -8.99844 -8.86536 -8.47574 -6.90030 -6.28648 -3.99784 2.33832 2.50994 2.57694 2.80739 3.05326 3.31910 3.34815 3.39315 3.53265 3.68061 4.03037 4.19752 4.30588 4.34833 4.44401 4.51335 4.61699 4.76761 4.80151 4.87430 5.07105 5.10732 5.29530 5.34852 5.40304 5.50319 5.52820 5.68168 5.76435 5.78213 5.87415 5.97115 6.00497 6.32248 6.51069 6.60730 7.00063 7.20092 7.67048 7.94459 7.98038 8.13051 8.40969 8.56732 9.18017 10.80540 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.012232 B = 0.003125 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.534535 B = 8958.498735 C =10385.727302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.087 0.913 9 S -0.141 6.141 10 C -0.122 4.122 11 C 0.528 3.472 12 O -0.517 6.517 13 N -0.730 5.730 14 C 0.123 3.877 15 C 0.143 3.857 16 N -0.716 5.716 17 C 0.515 3.485 18 O -0.479 6.479 19 C -0.168 4.168 20 C 0.514 3.486 21 N -0.860 5.860 22 O -0.495 6.495 23 C -0.135 4.135 24 C -0.140 4.140 25 C -0.133 4.133 26 H 0.271 0.729 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.395 0.605 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.400 0.600 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.399 0.601 36 H 0.403 0.597 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.505 -24.870 3.806 28.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.105 0.895 9 S 0.086 5.914 10 C -0.273 4.273 11 C 0.314 3.686 12 O -0.391 6.391 13 N -0.384 5.384 14 C -0.002 4.002 15 C 0.056 3.944 16 N -0.371 5.371 17 C 0.298 3.702 18 O -0.349 6.349 19 C -0.212 4.212 20 C 0.296 3.704 21 N -0.426 5.426 22 O -0.366 6.366 23 C -0.173 4.173 24 C -0.177 4.177 25 C -0.172 4.172 26 H 0.080 0.920 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.228 0.772 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.234 0.766 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.227 0.773 36 H 0.234 0.766 37 H 0.093 0.907 38 H 0.117 0.883 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.111 0.889 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 14.985 -22.114 3.845 26.988 hybrid contribution -1.993 -1.298 0.256 2.392 sum 12.992 -23.411 4.101 27.087 Atomic orbital electron populations 1.69940 1.05914 1.27762 1.48195 1.24703 0.94443 0.98965 0.93147 0.86743 0.81969 0.83254 0.79966 1.19183 1.19932 1.15873 1.22320 0.88361 0.97485 1.58707 0.89455 1.84853 1.09104 1.00094 1.97393 1.23258 0.94138 1.04370 1.05515 1.20263 0.90509 0.82378 0.75482 1.90709 1.58746 1.42173 1.47521 1.45775 1.07250 1.07744 1.77659 1.21583 0.81869 0.93733 1.03024 1.21537 0.93635 0.91710 0.87520 1.45611 1.40668 1.45859 1.04979 1.19910 0.85328 0.82007 0.82916 1.90891 1.28765 1.33140 1.82121 1.21605 1.02545 1.03853 0.93152 1.19947 0.83515 0.81343 0.85548 1.43847 1.36088 1.53589 1.09107 1.90937 1.25837 1.33427 1.86411 1.23280 0.99275 0.98765 0.95947 1.22846 0.97927 0.97317 0.99615 1.23172 0.94685 0.97916 1.01391 0.91958 0.88625 0.88760 0.77207 0.90057 0.90875 0.76555 0.85745 0.86180 0.77303 0.76567 0.90695 0.88255 0.90983 0.90214 0.88923 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.65 13.97 55.49 0.78 -25.88 16 2 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 3 Si 0.86 22.09 27.74 -169.99 -4.71 17.37 16 4 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.23 -6.11 6.74 56.52 0.38 -5.72 16 7 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 8 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 9 S -0.14 -3.64 18.55 -107.50 -1.99 -5.64 16 10 C -0.12 -2.39 6.16 36.01 0.22 -2.17 16 11 C 0.53 9.79 7.85 -10.98 -0.09 9.71 16 12 O -0.52 -11.88 15.86 5.56 0.09 -11.80 16 13 N -0.73 -9.60 5.38 -60.29 -0.32 -9.93 16 14 C 0.12 1.55 4.92 -4.04 -0.02 1.53 16 15 C 0.14 1.22 0.63 -131.01 -0.08 1.14 16 16 N -0.72 -5.04 4.53 -46.85 -0.21 -5.25 16 17 C 0.51 5.29 7.38 -10.98 -0.08 5.21 16 18 O -0.48 -7.64 12.18 -18.96 -0.23 -7.87 16 19 C -0.17 -1.07 6.19 -29.03 -0.18 -1.25 16 20 C 0.51 5.19 8.09 -10.99 -0.09 5.10 16 21 N -0.86 -4.90 8.87 31.22 0.28 -4.63 16 22 O -0.49 -8.12 15.02 -18.96 -0.28 -8.40 16 23 C -0.13 -0.81 7.37 -25.92 -0.19 -1.00 16 24 C -0.14 -0.83 7.99 -25.92 -0.21 -1.04 16 25 C -0.13 -1.15 6.95 -25.92 -0.18 -1.33 16 26 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 28 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 29 H 0.39 3.87 8.11 -40.82 -0.33 3.53 16 30 H 0.08 1.34 7.34 -51.93 -0.38 0.96 16 31 H 0.07 0.91 7.94 -51.93 -0.41 0.50 16 32 H 0.40 1.37 8.67 -40.82 -0.35 1.01 16 33 H 0.12 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.12 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.40 0.81 8.83 -40.82 -0.36 0.45 16 36 H 0.40 2.23 8.93 -40.82 -0.36 1.86 16 37 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 38 H 0.10 0.62 7.96 -51.93 -0.41 0.21 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 42 H 0.08 0.86 7.19 -51.93 -0.37 0.49 16 LS Contribution 368.49 15.07 5.55 5.55 Total: -1.00 -42.18 368.49 -7.69 -49.87 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -5.94 Total: 2.74 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -0.68 Total: 3.85 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.52 Total: -45.68 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.43 Total: -28.06 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.71 Total: 17.37 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -42.18 -7.69 -49.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062579618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.168 kcal (2) G-P(sol) polarization free energy of solvation -42.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.47 seconds