Wall clock time and date at job start Tue Mar 31 2020 05:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86796 * 119.99984 * 2 1 4 4 H 1.48500 * 109.47357 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47466 * 29.99616 * 3 2 1 6 6 H 1.48502 * 109.47444 * 149.99701 * 3 2 1 7 7 C 1.38805 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99525 * 0.02562 * 7 2 1 9 9 S 1.76195 * 119.99868 * 180.02562 * 7 2 1 10 10 C 1.80996 * 99.99884 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.47252 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99686 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00141 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00129 * 174.97223 * 13 11 10 15 15 C 1.53010 * 112.84911 * 294.02337 * 14 13 11 16 16 N 1.46504 * 109.47083 * 311.52266 * 15 14 13 17 17 C 1.34770 * 119.99770 * 174.96292 * 16 15 14 18 18 O 1.21277 * 120.00339 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99779 * 180.02562 * 17 16 15 20 20 C 1.50706 * 109.46978 * 179.97438 * 19 17 16 21 21 N 1.34783 * 119.99750 * 179.97438 * 20 19 17 22 22 O 1.21274 * 120.00270 * 359.97438 * 20 19 17 23 23 C 1.53775 * 113.61642 * 162.71865 * 14 13 11 24 24 C 1.53782 * 87.08260 * 270.88377 * 23 14 13 25 25 C 1.53778 * 113.61810 * 65.22018 * 14 13 11 26 26 H 0.96997 * 120.00355 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47582 * 299.99559 * 10 9 7 28 28 H 1.09000 * 109.47069 * 59.99999 * 10 9 7 29 29 H 0.97000 * 119.99644 * 354.97698 * 13 11 10 30 30 H 1.09002 * 109.46765 * 71.51831 * 15 14 13 31 31 H 1.08994 * 109.47258 * 191.52127 * 15 14 13 32 32 H 0.96999 * 119.99881 * 354.95553 * 16 15 14 33 33 H 1.08999 * 109.46670 * 299.98744 * 19 17 16 34 34 H 1.08997 * 109.47467 * 59.99252 * 19 17 16 35 35 H 0.96995 * 119.99783 * 359.97438 * 21 20 19 36 36 H 0.96998 * 119.99789 * 179.97438 * 21 20 19 37 37 H 1.09000 * 113.61589 * 25.43393 * 23 14 13 38 38 H 1.09000 * 113.61764 * 156.33151 * 23 14 13 39 39 H 1.08996 * 113.61346 * 220.02295 * 24 23 14 40 40 H 1.08999 * 113.61492 * 89.11500 * 24 23 14 41 41 H 1.08995 * 113.61919 * 203.66926 * 25 14 13 42 42 H 1.09010 * 113.61004 * 334.56873 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5731 -3.2325 0.0008 12 8 6.3441 -2.2962 0.0014 13 7 6.0458 -4.4946 0.0011 14 6 7.4862 -4.7374 -0.1102 15 6 8.0579 -4.3101 -1.4635 16 7 7.2193 -4.8453 -2.5390 17 6 7.4722 -4.5120 -3.8200 18 8 8.3938 -3.7686 -4.0826 19 6 6.6092 -5.0621 -4.9262 20 6 7.0989 -4.5398 -6.2524 21 7 6.4750 -4.9016 -7.3910 22 8 8.0542 -3.7939 -6.2950 23 6 7.9073 -6.1527 0.3194 24 6 8.0581 -5.5907 1.7429 25 6 8.2932 -4.2178 1.0913 26 1 -0.4850 0.8400 -0.0004 27 1 3.6434 -3.4318 0.8907 28 1 3.6440 -3.4313 -0.8893 29 1 5.4322 -5.2422 0.0750 30 1 8.0749 -3.2218 -1.5234 31 1 9.0721 -4.6956 -1.5676 32 1 6.4820 -5.4396 -2.3289 33 1 6.6633 -6.1507 -4.9219 34 1 5.5767 -4.7489 -4.7715 35 1 5.7112 -5.4985 -7.3569 36 1 6.7900 -4.5652 -8.2445 37 1 7.1127 -6.8926 0.2239 38 1 8.8481 -6.4812 -0.1223 39 1 8.9279 -5.9763 2.2746 40 1 7.1427 -5.6434 2.3323 41 1 9.3394 -4.0172 0.8607 42 1 7.8099 -3.3955 1.6191 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062732874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:57 Heat of formation + Delta-G solvation = -88.906097 kcal Electronic energy + Delta-G solvation = -25913.031360 eV Core-core repulsion = 22020.100755 eV Total energy + Delta-G solvation = -3892.930605 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 2.68 seconds Orbital eigenvalues (eV) -40.84148 -40.08866 -38.48026 -37.89579 -34.50642 -33.80488 -33.14918 -32.46814 -30.94286 -29.38894 -27.58827 -26.02622 -25.64387 -23.19970 -21.65143 -20.90257 -20.24822 -19.26708 -17.96517 -17.85373 -17.40096 -16.61916 -16.51312 -16.09963 -15.95770 -15.46209 -15.26930 -15.02559 -14.74008 -14.48725 -14.18662 -13.74161 -13.64324 -13.46558 -13.37286 -12.91500 -12.82009 -12.61010 -12.31630 -12.16551 -11.75320 -11.29926 -11.15902 -11.04076 -11.01549 -10.64627 -10.57262 -10.33142 -9.87691 -9.86188 -9.55334 -9.52073 -9.06883 -9.04197 -9.01063 -8.52803 -6.94880 -6.32214 -4.04012 2.44810 2.63606 2.69765 2.82326 2.90556 3.21712 3.32515 3.49434 3.50324 3.59591 4.12072 4.30891 4.31930 4.42762 4.50936 4.61565 4.70569 4.75734 4.90014 5.01551 5.07185 5.07945 5.31486 5.38145 5.43082 5.50075 5.62326 5.68822 5.80695 5.88810 5.93070 6.01194 6.03690 6.33405 6.56623 6.59627 7.06924 7.40252 7.52027 7.90715 8.08052 8.26752 8.37378 8.44071 9.14305 10.76948 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.008866 B = 0.003823 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3157.243005 B = 7321.612360 C = 9609.806357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.097 3.903 3 Si 0.855 3.145 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.523 4.523 8 H 0.088 0.912 9 S -0.138 6.138 10 C -0.124 4.124 11 C 0.534 3.466 12 O -0.506 6.506 13 N -0.719 5.719 14 C 0.143 3.857 15 C 0.124 3.876 16 N -0.725 5.725 17 C 0.510 3.490 18 O -0.495 6.495 19 C -0.168 4.168 20 C 0.515 3.485 21 N -0.861 5.861 22 O -0.496 6.496 23 C -0.135 4.135 24 C -0.139 4.139 25 C -0.135 4.135 26 H 0.271 0.729 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.400 0.600 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.396 0.604 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.399 0.601 36 H 0.402 0.598 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.314 -20.222 -5.282 24.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.112 4.112 3 Si 0.680 3.320 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.088 5.912 10 C -0.275 4.275 11 C 0.319 3.681 12 O -0.378 6.378 13 N -0.374 5.374 14 C 0.055 3.945 15 C -0.001 4.001 16 N -0.379 5.379 17 C 0.294 3.706 18 O -0.367 6.367 19 C -0.211 4.211 20 C 0.298 3.702 21 N -0.427 5.427 22 O -0.368 6.368 23 C -0.173 4.173 24 C -0.177 4.177 25 C -0.173 4.173 26 H 0.081 0.919 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.235 0.765 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.230 0.770 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.227 0.773 36 H 0.233 0.767 37 H 0.092 0.908 38 H 0.114 0.886 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.108 0.892 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 14.788 -17.473 -5.310 23.499 hybrid contribution -2.043 -1.224 -0.231 2.392 sum 12.745 -18.697 -5.541 23.296 Atomic orbital electron populations 1.69931 1.05923 1.27812 1.48012 1.24696 0.94427 0.98943 0.93102 0.86755 0.81907 0.83312 0.80013 1.19185 1.19900 1.15913 1.22309 0.88326 0.97486 1.58922 0.89436 1.84881 1.09178 0.99758 1.97403 1.23277 0.93957 1.04619 1.05609 1.20270 0.90486 0.82198 0.75100 1.90718 1.58556 1.42067 1.46508 1.45676 1.05990 1.08237 1.77524 1.21483 0.82018 0.96922 0.94056 1.21636 0.93421 1.01058 0.83967 1.45758 1.35016 1.51342 1.05778 1.19899 0.85507 0.81983 0.83225 1.90874 1.29700 1.33690 1.82421 1.21593 1.02639 1.03790 0.93074 1.19987 0.83410 0.81283 0.85558 1.43856 1.36251 1.53547 1.09034 1.90921 1.25894 1.33527 1.86461 1.23265 1.02266 0.94657 0.97136 1.22834 1.02300 0.96596 0.95934 1.23177 1.00430 0.98028 0.95706 0.91914 0.88592 0.88679 0.76526 0.89730 0.90922 0.77034 0.86176 0.85798 0.77284 0.76679 0.90827 0.88627 0.91107 0.89948 0.89167 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.25 13.97 55.49 0.78 -25.47 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.75 27.74 -169.99 -4.72 17.04 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.24 -5.99 6.74 56.52 0.38 -5.60 16 7 C -0.52 -14.76 10.04 30.94 0.31 -14.45 16 8 H 0.09 2.56 8.03 -52.49 -0.42 2.14 16 9 S -0.14 -3.43 18.54 -107.50 -1.99 -5.42 16 10 C -0.12 -2.23 6.16 36.01 0.22 -2.00 16 11 C 0.53 8.56 7.40 -10.98 -0.08 8.48 16 12 O -0.51 -10.20 13.86 5.56 0.08 -10.13 16 13 N -0.72 -7.53 4.53 -46.86 -0.21 -7.75 16 14 C 0.14 1.38 0.63 -131.01 -0.08 1.30 16 15 C 0.12 1.46 4.93 -4.03 -0.02 1.44 16 16 N -0.73 -7.43 5.38 -60.29 -0.32 -7.76 16 17 C 0.51 6.57 7.82 -10.99 -0.09 6.48 16 18 O -0.49 -9.21 14.17 -18.96 -0.27 -9.48 16 19 C -0.17 -1.36 6.19 -29.03 -0.18 -1.54 16 20 C 0.52 5.75 8.09 -10.98 -0.09 5.66 16 21 N -0.86 -5.47 8.87 31.22 0.28 -5.20 16 22 O -0.50 -8.64 15.02 -18.95 -0.28 -8.92 16 23 C -0.14 -0.87 7.37 -25.92 -0.19 -1.06 16 24 C -0.14 -1.06 7.99 -25.92 -0.21 -1.26 16 25 C -0.13 -1.39 6.95 -25.92 -0.18 -1.57 16 26 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16 27 H 0.10 1.60 8.14 -51.92 -0.42 1.17 16 28 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 29 H 0.40 2.92 8.67 -40.82 -0.35 2.56 16 30 H 0.08 1.38 7.34 -51.93 -0.38 1.00 16 31 H 0.07 0.80 7.94 -51.93 -0.41 0.39 16 32 H 0.40 2.80 8.11 -40.82 -0.33 2.47 16 33 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.40 1.09 8.83 -40.82 -0.36 0.73 16 36 H 0.40 2.38 8.93 -40.82 -0.36 2.01 16 37 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 38 H 0.10 0.55 7.96 -51.93 -0.41 0.13 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 42 H 0.08 1.13 7.19 -51.92 -0.37 0.76 16 LS Contribution 368.48 15.07 5.55 5.55 Total: -1.00 -41.14 368.48 -7.74 -48.88 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.94 Total: 4.46 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -0.68 Total: 4.18 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.52 Total: -46.17 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.48 Total: -28.52 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.72 Total: 17.04 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -1.99 Total: -5.42 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -41.14 -7.74 -48.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062732874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.029 kcal (2) G-P(sol) polarization free energy of solvation -41.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.68 seconds