Wall clock time and date at job start Tue Mar 31 2020 06:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86802 * 119.99882 * 2 1 4 4 H 1.48502 * 109.47058 * 269.99929 * 3 2 1 5 5 H 1.48504 * 109.47023 * 29.99734 * 3 2 1 6 6 H 1.48500 * 109.47015 * 150.00085 * 3 2 1 7 7 C 1.38798 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99582 * 0.02562 * 7 2 1 9 9 S 1.76193 * 120.00002 * 179.97438 * 7 2 1 10 10 C 1.81000 * 100.00022 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47139 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99892 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00078 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00166 * 179.97438 * 13 11 10 15 15 H 1.09005 * 108.45296 * 327.31180 * 14 13 11 16 16 C 1.52566 * 108.39204 * 209.68939 * 14 13 11 17 17 C 1.50887 * 109.36094 * 153.82539 * 16 14 13 18 18 C 1.53949 * 110.09284 * 91.88248 * 17 16 14 19 19 N 1.47594 * 112.14791 * 319.43545 * 18 17 16 20 20 C 1.34779 * 118.64840 * 137.87087 * 19 18 17 21 21 O 1.21346 * 119.99225 * 358.13107 * 20 19 18 22 22 C 1.49450 * 120.00340 * 178.13695 * 20 19 18 23 23 N 1.34778 * 119.99796 * 186.16163 * 22 20 19 24 24 O 1.21342 * 119.99697 * 6.16403 * 22 20 19 25 25 C 1.44585 * 122.71403 * 317.87196 * 19 18 17 26 26 C 1.47092 * 108.51366 * 84.99880 * 14 13 11 27 27 H 0.97003 * 119.99926 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.46841 * 60.00329 * 10 9 7 29 29 H 1.09006 * 109.46675 * 299.99739 * 10 9 7 30 30 H 0.96992 * 119.99779 * 0.02562 * 13 11 10 31 31 H 1.09008 * 109.48792 * 273.78798 * 16 14 13 32 32 H 1.08994 * 109.49128 * 33.83671 * 16 14 13 33 33 H 1.08994 * 109.36651 * 212.07781 * 17 16 14 34 34 H 1.08999 * 109.36452 * 331.69349 * 17 16 14 35 35 H 1.09006 * 108.94670 * 80.13040 * 18 17 16 36 36 H 1.09004 * 108.94552 * 198.74702 * 18 17 16 37 37 H 0.96993 * 120.00242 * 0.02562 * 23 22 20 38 38 H 0.96995 * 119.99410 * 179.97438 * 23 22 20 39 39 H 1.08999 * 109.44519 * 330.68568 * 25 19 18 40 40 H 1.09000 * 109.45321 * 210.76365 * 25 19 18 41 41 H 1.08999 * 109.32628 * 63.63684 * 26 14 13 42 42 H 1.09006 * 109.18904 * 304.07171 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7722 -1.2020 -0.0001 10 6 4.0866 -2.9845 0.0001 11 6 5.5730 -3.2325 0.0002 12 8 6.3440 -2.2962 -0.0003 13 7 6.0457 -4.4946 -0.0001 14 6 7.4907 -4.7357 -0.0005 15 1 7.9740 -3.9340 -0.5590 16 6 7.7583 -6.0554 -0.7178 17 6 9.1505 -6.0353 -1.2992 18 6 10.1520 -6.6330 -0.2942 19 7 9.8741 -6.2038 1.0903 20 6 9.9612 -7.1154 2.0792 21 8 10.2296 -8.2696 1.8183 22 6 9.7269 -6.7047 3.4970 23 7 9.9349 -7.5845 4.4965 24 8 9.3495 -5.5791 3.7481 25 6 9.5123 -4.8457 1.4297 26 6 7.9718 -4.6928 1.3888 27 1 -0.4850 0.8401 -0.0004 28 1 3.6434 -3.4317 -0.8896 29 1 3.6440 -3.4313 0.8905 30 1 5.4291 -5.2434 -0.0007 31 1 7.6722 -6.8787 -0.0087 32 1 7.0312 -6.1878 -1.5190 33 1 9.1670 -6.6214 -2.2180 34 1 9.4337 -5.0069 -1.5235 35 1 10.0982 -7.7205 -0.3453 36 1 11.1588 -6.3169 -0.5674 37 1 10.2369 -8.4841 4.2958 38 1 9.7832 -7.3178 5.4167 39 1 9.9642 -4.1599 0.7130 40 1 9.8737 -4.6132 2.4314 41 1 7.5136 -5.5042 1.9544 42 1 7.6920 -3.7387 1.8356 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001065876402.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:21 Heat of formation + Delta-G solvation = -92.672569 kcal Electronic energy + Delta-G solvation = -26076.797889 eV Core-core repulsion = 22183.703958 eV Total energy + Delta-G solvation = -3893.093931 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 13.00 seconds Orbital eigenvalues (eV) -41.48671 -39.81725 -38.83686 -37.81828 -35.31652 -34.08837 -33.21215 -32.43058 -31.87614 -29.12313 -27.57284 -25.66886 -25.31048 -24.94597 -21.98709 -20.88899 -20.54716 -19.86792 -18.28428 -17.84316 -17.71204 -16.97166 -16.48860 -16.32338 -16.15040 -15.61094 -15.27566 -14.98529 -14.92664 -14.66245 -14.21468 -13.99044 -13.86353 -13.48627 -13.36811 -12.94135 -12.79090 -12.67693 -12.23315 -12.09962 -11.77888 -11.63230 -11.26668 -11.24606 -11.05306 -10.99343 -10.80958 -10.56666 -10.30479 -9.84714 -9.69751 -9.51035 -9.21557 -8.99687 -8.85006 -8.48756 -6.90335 -6.28047 -3.99495 1.01166 2.03749 2.76627 2.79450 3.00375 3.26349 3.31551 3.34936 3.51506 3.66612 4.04766 4.27973 4.34073 4.47709 4.62793 4.73561 4.76703 4.96519 4.99799 5.11028 5.19239 5.25343 5.28434 5.41363 5.46003 5.50687 5.59098 5.77539 5.79739 5.84422 5.90342 6.03274 6.10968 6.17545 6.25038 6.47951 6.61139 6.79064 7.33536 7.60584 7.64588 7.95086 8.42627 8.52199 9.18209 10.81239 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.022492 B = 0.002518 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.613101 B =11117.153341 C =11624.642188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.125 4.125 11 C 0.531 3.469 12 O -0.520 6.520 13 N -0.737 5.737 14 C 0.145 3.855 15 H 0.085 0.915 16 C -0.125 4.125 17 C -0.128 4.128 18 C 0.106 3.894 19 N -0.569 5.569 20 C 0.500 3.500 21 O -0.527 6.527 22 C 0.510 3.490 23 N -0.823 5.823 24 O -0.503 6.503 25 C 0.084 3.916 26 C -0.134 4.134 27 H 0.271 0.729 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.398 0.602 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.413 0.587 38 H 0.412 0.588 39 H 0.077 0.923 40 H 0.129 0.871 41 H 0.063 0.937 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.864 -18.781 3.419 29.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.394 6.394 13 N -0.390 5.390 14 C 0.041 3.959 15 H 0.103 0.897 16 C -0.163 4.163 17 C -0.167 4.167 18 C -0.015 4.015 19 N -0.301 5.301 20 C 0.282 3.718 21 O -0.405 6.405 22 C 0.289 3.711 23 N -0.389 5.389 24 O -0.379 6.379 25 C -0.039 4.039 26 C -0.173 4.173 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.231 0.769 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.243 0.757 38 H 0.244 0.756 39 H 0.096 0.904 40 H 0.146 0.854 41 H 0.082 0.918 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 23.878 -16.921 3.212 29.441 hybrid contribution -1.207 -0.995 0.254 1.585 sum 22.670 -17.916 3.465 29.102 Atomic orbital electron populations 1.69942 1.05927 1.27752 1.48147 1.24720 0.94455 0.98983 0.93198 0.86729 0.81919 0.83254 0.79911 1.19229 1.19963 1.15884 1.22322 0.88338 0.97515 1.58693 0.89431 1.84767 1.09196 1.00126 1.97418 1.23287 0.94198 1.04320 1.05716 1.20279 0.90527 0.82450 0.75039 1.90689 1.58709 1.42165 1.47857 1.46240 1.07316 1.07957 1.77519 1.20005 0.81533 0.97635 0.96738 0.89710 1.21390 0.97285 0.97255 1.00379 1.21694 0.94262 1.02652 0.98085 1.22050 0.98661 1.01546 0.79288 1.47713 1.65227 1.10515 1.06667 1.20136 0.79119 0.85776 0.86745 1.90748 1.47638 1.18163 1.83907 1.20151 0.78363 0.85361 0.87230 1.43561 1.69273 1.16748 1.09328 1.90729 1.44033 1.18955 1.84160 1.22455 0.95521 0.80769 1.05127 1.21501 0.95140 1.03957 0.96703 0.91955 0.88603 0.88553 0.76864 0.91325 0.90514 0.89714 0.90713 0.88788 0.90994 0.75702 0.75587 0.90430 0.85351 0.91801 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.74 13.97 55.49 0.78 -25.97 16 2 C 0.09 2.80 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.90 27.74 -169.99 -4.71 17.19 16 4 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.23 -5.99 6.74 56.52 0.38 -5.61 16 7 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 8 H 0.09 2.65 8.03 -52.49 -0.42 2.22 16 9 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 10 C -0.12 -2.42 6.16 36.00 0.22 -2.20 16 11 C 0.53 9.33 7.69 -10.99 -0.08 9.25 16 12 O -0.52 -10.97 15.35 5.55 0.09 -10.89 16 13 N -0.74 -9.32 4.88 -56.82 -0.28 -9.60 16 14 C 0.15 1.59 1.96 -70.99 -0.14 1.46 16 15 H 0.08 1.08 6.66 -51.93 -0.35 0.73 16 16 C -0.12 -1.02 4.99 -28.01 -0.14 -1.16 16 17 C -0.13 -0.84 5.71 -27.30 -0.16 -1.00 16 18 C 0.11 0.74 6.11 -2.95 -0.02 0.72 16 19 N -0.57 -4.87 2.24 -173.04 -0.39 -5.26 16 20 C 0.50 4.71 7.69 -11.58 -0.09 4.62 16 21 O -0.53 -5.71 15.76 5.50 0.09 -5.62 16 22 C 0.51 4.47 8.01 -11.58 -0.09 4.37 16 23 N -0.82 -4.34 8.87 30.90 0.27 -4.07 16 24 O -0.50 -5.59 13.06 5.50 0.07 -5.52 16 25 C 0.08 0.79 4.98 -4.08 -0.02 0.77 16 26 C -0.13 -1.51 4.61 -28.58 -0.13 -1.64 16 27 H 0.27 7.62 8.31 -40.82 -0.34 7.29 16 28 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 29 H 0.10 1.76 8.14 -51.91 -0.42 1.34 16 30 H 0.40 4.04 8.61 -40.82 -0.35 3.69 16 31 H 0.07 0.59 7.48 -51.92 -0.39 0.20 16 32 H 0.08 0.60 8.04 -51.93 -0.42 0.18 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.51 7.32 -51.93 -0.38 0.13 16 35 H 0.09 0.71 6.94 -51.93 -0.36 0.35 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.41 1.61 8.32 -40.82 -0.34 1.27 16 38 H 0.41 1.46 8.93 -40.82 -0.36 1.10 16 39 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 40 H 0.13 1.32 4.88 -53.60 -0.26 1.06 16 41 H 0.06 0.74 7.84 -51.93 -0.41 0.34 16 42 H 0.09 1.23 7.94 -51.93 -0.41 0.82 16 LS Contribution 354.73 15.07 5.35 5.35 Total: -1.00 -36.03 354.73 -6.88 -42.92 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.72 Total: 3.95 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -0.43 Total: 3.11 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.38 Total: -44.90 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: 0.24 Total: -22.03 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.19 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.03 -6.88 -42.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065876402.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.754 kcal (2) G-P(sol) polarization free energy of solvation -36.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.00 seconds