Wall clock time and date at job start Tue Mar 31 2020 06:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 120.00006 * 2 1 4 4 H 1.48508 * 109.47275 * 180.27685 * 3 2 1 5 5 H 1.48503 * 109.47179 * 300.27509 * 3 2 1 6 6 H 1.48500 * 109.47133 * 60.27826 * 3 2 1 7 7 C 1.38805 * 120.00187 * 180.27590 * 2 1 3 8 8 H 1.07994 * 120.00639 * 179.72152 * 7 2 1 9 9 S 1.76209 * 119.99703 * 359.72503 * 7 2 1 10 10 C 1.81000 * 99.99796 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47114 * 180.02562 * 10 9 7 12 12 O 1.21287 * 120.00111 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00192 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99982 * 179.97438 * 13 11 10 15 15 H 1.08993 * 108.45052 * 32.69280 * 14 13 11 16 16 C 1.52572 * 108.51057 * 150.23317 * 14 13 11 17 17 C 1.50881 * 109.35682 * 206.26742 * 16 14 13 18 18 C 1.53950 * 110.09258 * 268.11195 * 17 16 14 19 19 N 1.47610 * 112.14225 * 40.56622 * 18 17 16 20 20 C 1.34781 * 118.64160 * 222.15223 * 19 18 17 21 21 O 1.21348 * 120.00008 * 353.98067 * 20 19 18 22 22 C 1.49451 * 119.99629 * 173.98276 * 20 19 18 23 23 N 1.34776 * 119.99519 * 174.07039 * 22 20 19 24 24 O 1.21342 * 119.99978 * 354.06116 * 22 20 19 25 25 C 1.44581 * 122.71235 * 42.13314 * 19 18 17 26 26 C 1.47090 * 108.51123 * 274.99631 * 14 13 11 27 27 H 0.96994 * 120.00026 * 359.72173 * 1 2 3 28 28 H 1.08999 * 109.47056 * 299.99920 * 10 9 7 29 29 H 1.08995 * 109.47262 * 59.99927 * 10 9 7 30 30 H 0.97004 * 120.00279 * 359.97438 * 13 11 10 31 31 H 1.08999 * 109.48762 * 326.22879 * 16 14 13 32 32 H 1.08992 * 109.49212 * 86.29999 * 16 14 13 33 33 H 1.09001 * 109.37048 * 147.92653 * 17 16 14 34 34 H 1.08996 * 109.26492 * 28.23653 * 17 16 14 35 35 H 1.08996 * 108.95068 * 279.88057 * 18 17 16 36 36 H 1.09001 * 108.88037 * 161.20248 * 18 17 16 37 37 H 0.96998 * 120.00363 * 359.97438 * 23 22 20 38 38 H 0.97007 * 119.99337 * 180.02562 * 23 22 20 39 39 H 1.08992 * 109.44741 * 149.23141 * 25 19 18 40 40 H 1.09002 * 109.44731 * 29.30871 * 25 19 18 41 41 H 1.08997 * 109.33103 * 296.20497 * 26 14 13 42 42 H 1.08998 * 109.32713 * 55.86141 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0068 5 1 1.8865 2.3993 -1.2091 6 1 1.8966 2.3935 1.2159 7 6 2.0103 -1.2020 -0.0058 8 1 3.0903 -1.2021 -0.0103 9 16 1.1293 -2.7281 -0.0058 10 6 2.5158 -3.8914 -0.0152 11 6 1.9874 -5.3027 -0.0171 12 8 0.7911 -5.5023 -0.0122 13 7 2.8441 -6.3431 -0.0234 14 6 2.3303 -7.7151 -0.0247 15 1 1.3922 -7.7316 -0.5793 16 6 3.3336 -8.6073 -0.7495 17 6 2.6141 -9.7994 -1.3306 18 6 2.6330 -10.9684 -0.3290 19 7 2.4082 -10.5163 1.0581 20 6 3.1581 -11.0519 2.0416 21 8 3.9196 -11.9641 1.7957 22 6 3.0517 -10.5222 3.4351 23 7 3.7097 -11.1331 4.4402 24 8 2.3730 -9.5421 3.6614 25 6 1.4172 -9.5224 1.4050 26 6 2.0586 -8.1133 1.3649 27 1 -0.4850 0.8400 0.0041 28 1 3.1204 -3.7290 -0.9075 29 1 3.1285 -3.7337 0.8724 30 1 3.8009 -6.1835 -0.0270 31 1 3.8090 -8.0429 -1.5517 32 1 4.0923 -8.9482 -0.0451 33 1 3.1081 -10.1056 -2.2527 34 1 1.5815 -9.5258 -1.5473 35 1 3.6001 -11.4679 -0.3861 36 1 1.8518 -11.6784 -0.6008 37 1 4.2520 -11.9167 4.2593 38 1 3.6403 -10.7895 5.3447 39 1 1.0397 -9.7211 2.4080 40 1 0.5937 -9.5668 0.6923 41 1 2.9931 -8.1263 1.9259 42 1 1.3752 -7.3957 1.8188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001065876403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:33 Heat of formation + Delta-G solvation = -96.370617 kcal Electronic energy + Delta-G solvation = -26056.723836 eV Core-core repulsion = 22163.469545 eV Total energy + Delta-G solvation = -3893.254291 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.43450 -39.70694 -38.76640 -37.75598 -35.22716 -34.02635 -33.16725 -32.41656 -31.77783 -28.98207 -27.52300 -25.58639 -25.20277 -24.89117 -21.94761 -20.82239 -20.41395 -19.72077 -18.31850 -17.81153 -17.66006 -16.92710 -16.38480 -16.20771 -16.09623 -15.56712 -15.22154 -14.87348 -14.79320 -14.56294 -14.17694 -13.99064 -13.83435 -13.43086 -13.19363 -12.90854 -12.64129 -12.55627 -12.09726 -11.95926 -11.74560 -11.61071 -11.21977 -11.06688 -11.01729 -10.99514 -10.75958 -10.69650 -10.21654 -9.78774 -9.73198 -9.39228 -9.15875 -9.06205 -8.77955 -8.21116 -6.47913 -6.20564 -3.90569 1.05629 2.08295 2.82334 3.05774 3.14327 3.22366 3.28782 3.29924 3.34194 3.73353 4.11093 4.21700 4.32428 4.52115 4.67572 4.79234 4.98076 5.02362 5.14669 5.20943 5.24417 5.31024 5.42171 5.48794 5.54028 5.59420 5.69363 5.85032 5.88397 5.93428 5.95922 6.14927 6.16929 6.24309 6.30730 6.53038 6.71735 6.82224 7.36348 7.61214 7.65314 7.76109 8.36803 8.66107 9.24962 10.86949 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.022942 B = 0.002416 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.152199 B =11584.588049 C =12141.620035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.518 6.518 13 N -0.738 5.738 14 C 0.145 3.855 15 H 0.084 0.916 16 C -0.125 4.125 17 C -0.129 4.129 18 C 0.109 3.891 19 N -0.571 5.571 20 C 0.500 3.500 21 O -0.527 6.527 22 C 0.507 3.493 23 N -0.825 5.825 24 O -0.502 6.502 25 C 0.101 3.899 26 C -0.132 4.132 27 H 0.268 0.732 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.396 0.604 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.412 0.588 38 H 0.411 0.589 39 H 0.111 0.889 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.234 -25.921 3.125 27.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.392 6.392 13 N -0.392 5.392 14 C 0.040 3.960 15 H 0.102 0.898 16 C -0.163 4.163 17 C -0.168 4.168 18 C -0.013 4.013 19 N -0.303 5.303 20 C 0.283 3.717 21 O -0.404 6.404 22 C 0.286 3.714 23 N -0.391 5.391 24 O -0.377 6.377 25 C -0.022 4.022 26 C -0.172 4.172 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.229 0.771 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.242 0.758 38 H 0.244 0.756 39 H 0.129 0.871 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.947 -25.966 2.912 27.037 hybrid contribution 2.706 1.254 0.331 3.000 sum 9.653 -24.713 3.243 26.729 Atomic orbital electron populations 1.70025 1.05942 1.27320 1.47016 1.24995 0.95029 0.99032 0.94584 0.86118 0.79584 0.81908 0.77887 1.19637 1.20579 1.20571 1.22912 0.94928 0.91686 1.58729 0.90927 1.85381 1.04987 0.96307 1.96695 1.23535 1.06518 0.95567 1.04822 1.20297 0.86605 0.86300 0.74942 1.90691 1.15304 1.85562 1.47646 1.46263 1.09792 1.05379 1.77774 1.19988 0.98140 0.81157 0.96711 0.89783 1.21387 0.98343 0.96267 1.00289 1.21716 1.02295 0.94677 0.98088 1.22033 1.03468 0.96632 0.79147 1.47712 1.35747 1.40099 1.06780 1.20187 0.81563 0.83418 0.86572 1.90745 1.38260 1.28099 1.83331 1.20135 0.80446 0.84029 0.86820 1.43558 1.51132 1.33816 1.10603 1.90844 1.37878 1.24892 1.84038 1.22096 0.89820 0.86717 1.03565 1.21502 1.02522 0.96578 0.96574 0.92255 0.89349 0.89318 0.77056 0.90568 0.91463 0.89708 0.90636 0.88960 0.90979 0.75781 0.75637 0.87114 0.90290 0.91441 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -15.33 9.50 30.94 0.29 -15.03 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.13 6.16 36.00 0.22 -2.91 16 11 C 0.53 9.91 7.69 -10.99 -0.08 9.83 16 12 O -0.52 -11.58 15.36 5.55 0.09 -11.50 16 13 N -0.74 -9.91 4.88 -56.82 -0.28 -10.19 16 14 C 0.14 1.68 1.96 -70.98 -0.14 1.54 16 15 H 0.08 1.12 6.65 -51.93 -0.35 0.78 16 16 C -0.12 -1.07 5.00 -28.01 -0.14 -1.21 16 17 C -0.13 -0.89 5.71 -27.30 -0.16 -1.04 16 18 C 0.11 0.79 6.07 -2.94 -0.02 0.77 16 19 N -0.57 -5.08 2.24 -173.04 -0.39 -5.47 16 20 C 0.50 4.88 7.67 -11.58 -0.09 4.79 16 21 O -0.53 -5.86 15.81 5.50 0.09 -5.77 16 22 C 0.51 4.64 7.89 -11.58 -0.09 4.55 16 23 N -0.82 -4.66 8.87 30.90 0.27 -4.39 16 24 O -0.50 -5.83 12.50 5.50 0.07 -5.76 16 25 C 0.10 0.99 4.96 -4.08 -0.02 0.97 16 26 C -0.13 -1.57 4.38 -28.58 -0.13 -1.70 16 27 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 29 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 30 H 0.40 4.29 8.61 -40.82 -0.35 3.94 16 31 H 0.08 0.63 8.05 -51.93 -0.42 0.21 16 32 H 0.07 0.59 7.48 -51.93 -0.39 0.20 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.55 7.30 -51.93 -0.38 0.17 16 35 H 0.09 0.71 7.03 -51.93 -0.37 0.35 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.41 1.75 8.32 -40.82 -0.34 1.41 16 38 H 0.41 1.63 8.93 -40.82 -0.36 1.26 16 39 H 0.11 1.16 5.47 -51.93 -0.28 0.88 16 40 H 0.08 0.70 8.06 -51.93 -0.42 0.28 16 41 H 0.07 0.83 7.17 -51.93 -0.37 0.46 16 42 H 0.09 1.30 7.95 -51.93 -0.41 0.88 16 LS Contribution 356.50 15.07 5.37 5.37 Total: -1.00 -36.44 356.50 -7.40 -43.83 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.67 Total: 4.23 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -0.44 Total: 2.54 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.34 Total: -45.61 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: 0.24 Total: -23.03 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.44 -7.40 -43.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065876403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.539 kcal (2) G-P(sol) polarization free energy of solvation -36.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds