Wall clock time and date at job start Tue Mar 31 2020 06:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47293 * 239.99634 * 3 2 1 5 5 H 1.48501 * 109.47025 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47276 * 119.99285 * 3 2 1 7 7 C 1.38802 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00271 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99914 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00016 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47127 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00497 * 0.02562 * 11 10 9 13 13 N 1.34786 * 120.00010 * 180.02562 * 11 10 9 14 14 C 1.47600 * 118.64075 * 359.97438 * 13 11 10 15 15 C 1.53957 * 112.07098 * 222.15275 * 14 13 11 16 16 C 1.50676 * 110.20114 * 40.57280 * 15 14 13 17 17 C 1.52569 * 109.34600 * 268.10314 * 16 15 14 18 18 H 1.09001 * 108.51394 * 323.72664 * 17 16 15 19 19 N 1.46498 * 108.51208 * 206.23226 * 17 16 15 20 20 C 1.34779 * 119.99974 * 150.23663 * 19 17 16 21 21 O 1.21347 * 119.99917 * 0.02562 * 20 19 17 22 22 C 1.49447 * 120.00165 * 180.02562 * 20 19 17 23 23 N 1.34770 * 120.00338 * 179.97438 * 22 20 19 24 24 O 1.21353 * 120.00280 * 359.97438 * 22 20 19 25 25 C 1.47095 * 114.32541 * 84.98411 * 17 16 15 26 26 C 1.44574 * 118.63956 * 179.97438 * 13 11 10 27 27 H 0.97000 * 119.99844 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46963 * 60.00602 * 10 9 7 29 29 H 1.09000 * 109.47343 * 300.00254 * 10 9 7 30 30 H 1.09002 * 108.94987 * 342.79751 * 14 13 11 31 31 H 1.08999 * 108.94700 * 101.51556 * 14 13 11 32 32 H 1.08998 * 109.36141 * 160.71581 * 15 14 13 33 33 H 1.08991 * 109.36797 * 280.32948 * 15 14 13 34 34 H 1.08998 * 109.52386 * 148.12651 * 16 15 14 35 35 H 1.09000 * 109.49145 * 28.06143 * 16 15 14 36 36 H 0.96998 * 120.00277 * 330.23560 * 19 17 16 37 37 H 0.97006 * 119.99922 * 359.97438 * 23 22 20 38 38 H 0.97004 * 120.00267 * 180.02562 * 23 22 20 39 39 H 1.08999 * 109.33120 * 176.93674 * 25 17 16 40 40 H 1.08995 * 109.33267 * 57.45215 * 25 17 16 41 41 H 1.09009 * 109.44431 * 209.32955 * 26 13 11 42 42 H 1.08996 * 109.45561 * 329.27414 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1042 1.6962 -1.2124 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 16 1.1291 -2.7280 0.0005 10 6 2.5156 -3.8915 0.0005 11 6 1.9871 -5.3027 0.0012 12 8 0.7908 -5.5023 0.0011 13 7 2.8439 -6.3432 0.0018 14 6 4.2936 -6.0660 0.0013 15 6 5.0603 -6.9969 -0.9557 16 6 4.2818 -7.1869 -2.2317 17 6 3.3901 -8.4180 -2.1011 18 1 3.9230 -9.1714 -1.5210 19 7 3.1433 -8.9577 -3.4405 20 6 2.9324 -10.2785 -3.6065 21 8 2.9466 -11.0206 -2.6465 22 6 2.6812 -10.8292 -4.9730 23 7 2.4709 -12.1500 -5.1391 24 8 2.6666 -10.0871 -5.9330 25 6 2.0938 -8.1615 -1.4549 26 6 2.3048 -7.6847 0.0030 27 1 -0.4850 0.8401 -0.0004 28 1 3.1242 -3.7315 0.8906 29 1 3.1243 -3.7314 -0.8894 30 1 4.4562 -5.0324 -0.3045 31 1 4.6801 -6.2008 1.0115 32 1 6.0301 -6.5570 -1.1880 33 1 5.2098 -7.9643 -0.4763 34 1 4.9730 -7.3251 -3.0630 35 1 3.6637 -6.3080 -2.4149 36 1 3.1316 -8.3645 -4.2079 37 1 2.4830 -12.7433 -4.3717 38 1 2.3082 -12.5075 -6.0260 39 1 1.5040 -9.0781 -1.4530 40 1 1.5588 -7.3924 -2.0119 41 1 3.0011 -8.3552 0.5069 42 1 1.3498 -7.6918 0.5283 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001066470704.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:52 Heat of formation + Delta-G solvation = -105.852068 kcal Electronic energy + Delta-G solvation = -25878.772118 eV Core-core repulsion = 21985.106681 eV Total energy + Delta-G solvation = -3893.665437 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.15063 -40.11924 -38.83838 -37.50120 -35.39658 -34.05424 -32.90246 -32.43571 -32.23763 -29.35364 -26.87942 -25.94434 -25.48556 -24.26328 -22.10781 -21.04135 -20.69186 -18.99921 -18.89425 -17.84964 -17.51936 -16.74134 -16.69801 -16.17367 -16.07381 -15.82912 -15.38521 -14.81321 -14.69142 -14.50618 -14.11065 -14.01481 -13.89301 -13.47693 -13.34439 -12.80633 -12.65272 -12.46425 -12.14638 -11.82696 -11.69217 -11.53145 -11.21612 -11.13133 -11.04846 -11.04605 -10.96132 -10.75748 -10.33482 -10.04241 -9.81600 -9.58749 -9.35473 -9.06735 -8.53064 -8.23257 -6.51111 -6.22202 -3.93015 1.04751 2.11890 2.85235 2.93724 3.03714 3.22636 3.25153 3.28457 3.48081 3.58074 4.17282 4.19572 4.26074 4.52303 4.67245 4.84553 4.90185 4.97239 5.10237 5.12948 5.28065 5.35198 5.41423 5.50612 5.54597 5.67512 5.74323 5.78913 5.84225 5.92918 5.94289 5.96792 6.04419 6.09998 6.16281 6.48377 6.75478 6.94326 7.41388 7.47906 7.58295 7.63207 8.34000 8.55695 9.22902 10.85141 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.020569 B = 0.002457 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.943987 B =11394.292040 C =11645.380415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.062 6.062 10 C -0.152 4.152 11 C 0.529 3.471 12 O -0.513 6.513 13 N -0.616 5.616 14 C 0.105 3.895 15 C -0.127 4.127 16 C -0.127 4.127 17 C 0.150 3.850 18 H 0.088 0.912 19 N -0.696 5.696 20 C 0.506 3.494 21 O -0.522 6.522 22 C 0.513 3.487 23 N -0.823 5.823 24 O -0.521 6.521 25 C -0.150 4.150 26 C 0.127 3.873 27 H 0.269 0.731 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.413 0.587 37 H 0.414 0.586 38 H 0.411 0.589 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.681 -22.728 -5.937 26.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.165 5.835 10 C -0.302 4.302 11 C 0.317 3.683 12 O -0.387 6.387 13 N -0.351 5.351 14 C -0.018 4.018 15 C -0.166 4.166 16 C -0.165 4.165 17 C 0.048 3.952 18 H 0.106 0.894 19 N -0.348 5.348 20 C 0.286 3.714 21 O -0.398 6.398 22 C 0.291 3.709 23 N -0.389 5.389 24 O -0.396 6.396 25 C -0.190 4.190 26 C 0.002 3.998 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.249 0.751 37 H 0.245 0.755 38 H 0.243 0.757 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.786 -22.830 -5.729 25.491 hybrid contribution 1.934 1.044 -0.462 2.246 sum 11.720 -21.786 -6.192 25.502 Atomic orbital electron populations 1.70004 1.05954 1.27570 1.46725 1.24989 0.95022 0.99015 0.94542 0.86234 0.79249 0.81286 0.78787 1.19945 1.20822 1.19936 1.22810 0.94814 0.91650 1.59097 0.91017 1.85420 1.05041 0.96366 1.96696 1.23583 1.06420 0.95609 1.04603 1.20406 0.86351 0.86435 0.75158 1.90702 1.15206 1.85338 1.47453 1.47759 1.06168 1.05798 1.75424 1.22024 0.79646 1.00560 0.99549 1.21635 0.99017 1.00714 0.95233 1.21369 0.98604 0.97893 0.98682 1.20230 0.96841 0.96130 0.82047 0.89395 1.46166 1.69622 1.07419 1.11638 1.20041 0.78564 0.83649 0.89171 1.90769 1.49607 1.58139 1.41255 1.20203 0.77462 0.83608 0.89614 1.43532 1.72975 1.08045 1.14386 1.90840 1.49091 1.58087 1.41548 1.21623 0.97000 1.02750 0.97629 1.21184 1.00566 0.82872 0.95166 0.92122 0.89304 0.89301 0.89266 0.91560 0.89857 0.91187 0.90679 0.90186 0.75082 0.75542 0.75689 0.90400 0.90606 0.90766 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.04 9.50 30.94 0.29 -14.74 16 8 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -2.97 4.48 36.00 0.16 -2.80 16 11 C 0.53 9.58 7.63 -10.98 -0.08 9.50 16 12 O -0.51 -11.36 15.30 5.56 0.08 -11.27 16 13 N -0.62 -7.99 2.24 -172.56 -0.39 -8.38 16 14 C 0.11 1.01 5.96 -2.94 -0.02 0.99 16 15 C -0.13 -0.92 5.69 -27.40 -0.16 -1.07 16 16 C -0.13 -1.05 4.99 -28.12 -0.14 -1.19 16 17 C 0.15 1.39 1.95 -70.99 -0.14 1.25 16 18 H 0.09 0.83 6.65 -51.93 -0.35 0.48 16 19 N -0.70 -6.39 4.88 -57.25 -0.28 -6.67 16 20 C 0.51 4.99 7.73 -11.59 -0.09 4.90 16 21 O -0.52 -5.97 15.97 5.50 0.09 -5.88 16 22 C 0.51 4.65 8.16 -11.59 -0.09 4.56 16 23 N -0.82 -4.45 8.87 30.90 0.27 -4.17 16 24 O -0.52 -6.15 17.31 5.49 0.10 -6.06 16 25 C -0.15 -1.69 5.19 -28.60 -0.15 -1.83 16 26 C 0.13 1.48 5.38 -4.11 -0.02 1.46 16 27 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.09 1.61 8.03 -51.91 -0.42 1.20 16 29 H 0.09 1.59 7.41 -51.92 -0.38 1.21 16 30 H 0.09 0.90 5.82 -51.93 -0.30 0.60 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.46 7.31 -51.93 -0.38 0.08 16 34 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 35 H 0.08 0.81 7.48 -51.93 -0.39 0.43 16 36 H 0.41 3.55 8.09 -40.82 -0.33 3.22 16 37 H 0.41 1.68 8.30 -40.82 -0.34 1.34 16 38 H 0.41 1.43 8.93 -40.82 -0.36 1.07 16 39 H 0.08 0.90 7.95 -51.93 -0.41 0.48 16 40 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.07 0.69 8.07 -51.92 -0.42 0.27 16 42 H 0.09 1.21 7.30 -51.93 -0.38 0.83 16 LS Contribution 361.32 15.07 5.44 5.44 Total: -1.00 -36.36 361.32 -7.40 -43.77 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.69 Total: 3.21 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -0.53 Total: 3.00 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.34 Total: -44.51 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: 0.27 Total: -23.21 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.36 -7.40 -43.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001066470704.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.087 kcal (2) G-P(sol) polarization free energy of solvation -36.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds