Wall clock time and date at job start Tue Mar 31 2020 06:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86806 * 120.00002 * 2 1 4 4 H 1.48497 * 109.47306 * 270.00475 * 3 2 1 5 5 H 1.48510 * 109.46991 * 30.00206 * 3 2 1 6 6 H 1.48498 * 109.47313 * 149.99905 * 3 2 1 7 7 C 1.38792 * 120.00326 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00572 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00035 * 359.97438 * 7 2 1 10 10 C 1.80996 * 100.00430 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47395 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99935 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00202 * 180.02562 * 11 10 9 14 14 C 1.46924 * 120.62885 * 0.02562 * 13 11 10 15 15 C 1.53190 * 108.77354 * 233.61009 * 14 13 11 16 16 C 1.53043 * 109.31174 * 305.36332 * 15 14 13 17 17 C 1.53044 * 109.53747 * 61.36613 * 16 15 14 18 18 H 1.08999 * 109.49435 * 58.62433 * 17 16 15 19 19 N 1.46505 * 109.49527 * 178.68214 * 17 16 15 20 20 C 1.34774 * 119.99516 * 204.93511 * 19 17 16 21 21 O 1.21277 * 120.00513 * 0.02562 * 20 19 17 22 22 C 1.50700 * 119.99464 * 179.97438 * 20 19 17 23 23 C 1.50702 * 109.46869 * 179.97438 * 22 20 19 24 24 N 1.34777 * 119.99928 * 179.72354 * 23 22 20 25 25 O 1.21283 * 120.00262 * 0.02562 * 23 22 20 26 26 C 1.46933 * 120.60562 * 180.02562 * 13 11 10 27 27 H 0.97000 * 120.00372 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.47170 * 59.99817 * 10 9 7 29 29 H 1.08996 * 109.47317 * 300.00493 * 10 9 7 30 30 H 1.08999 * 109.58827 * 113.82482 * 14 13 11 31 31 H 1.08995 * 109.58653 * 353.39409 * 14 13 11 32 32 H 1.08998 * 109.49905 * 185.41593 * 15 14 13 33 33 H 1.08994 * 109.52672 * 65.32847 * 15 14 13 34 34 H 1.09000 * 109.46094 * 301.34697 * 16 15 14 35 35 H 1.09006 * 109.45790 * 181.38829 * 16 15 14 36 36 H 0.96995 * 119.99901 * 24.93885 * 19 17 16 37 37 H 1.09004 * 109.47210 * 60.00192 * 22 20 19 38 38 H 1.08994 * 109.47551 * 299.99844 * 22 20 19 39 39 H 0.96999 * 120.00047 * 180.27521 * 24 23 22 40 40 H 0.97000 * 120.00317 * 0.28382 * 24 23 22 41 41 H 1.08996 * 109.61589 * 6.62030 * 26 13 11 42 42 H 1.09002 * 109.56239 * 246.19248 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6528 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2019 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9875 -5.3026 -0.0017 12 8 0.7912 -5.5022 0.0000 13 7 2.8443 -6.3430 -0.0022 14 6 4.2960 -6.1172 -0.0026 15 6 4.9151 -6.8914 -1.1705 16 6 4.5080 -8.3635 -1.0743 17 6 2.9851 -8.4808 -1.1702 18 1 2.6459 -8.0509 -2.1127 19 7 2.5986 -9.8926 -1.1096 20 6 1.4357 -10.2970 -1.6577 21 8 0.7093 -9.4923 -2.2015 22 6 1.0384 -11.7494 -1.5958 23 6 -0.2938 -11.9351 -2.2755 24 7 -0.8484 -13.1613 -2.3474 25 8 -0.8642 -10.9821 -2.7626 26 6 2.3436 -7.7244 -0.0024 27 1 -0.4851 0.8400 0.0004 28 1 3.1252 -3.7317 0.8875 29 1 3.1238 -3.7309 -0.8924 30 1 4.7212 -6.4711 0.9366 31 1 4.5002 -5.0531 -0.1205 32 1 6.0012 -6.8106 -1.1256 33 1 4.5580 -6.4761 -2.1129 34 1 4.8443 -8.7717 -0.1212 35 1 4.9674 -8.9214 -1.8904 36 1 3.1797 -10.5363 -0.6750 37 1 0.9609 -12.0608 -0.5541 38 1 1.7917 -12.3540 -2.1008 39 1 -1.7040 -13.2816 -2.7884 40 1 -0.3922 -13.9237 -1.9581 41 1 1.2600 -7.7209 -0.1204 42 1 2.6093 -8.2091 0.9371 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070452411.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:01 Heat of formation + Delta-G solvation = -108.323689 kcal Electronic energy + Delta-G solvation = -25545.012311 eV Core-core repulsion = 21651.239696 eV Total energy + Delta-G solvation = -3893.772615 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 8.54 seconds Orbital eigenvalues (eV) -40.65769 -39.82420 -38.67363 -37.12968 -34.68868 -33.93020 -32.41307 -32.35933 -31.38046 -30.01985 -28.41782 -25.55057 -25.06870 -23.54249 -21.82003 -21.08180 -20.33555 -19.01858 -17.90963 -17.68180 -17.50653 -16.75907 -16.28861 -16.21620 -15.86777 -15.59377 -15.13372 -14.76512 -14.66894 -14.17102 -13.98595 -13.92849 -13.78212 -13.53988 -13.24854 -12.99879 -12.84107 -12.52110 -12.38018 -11.89172 -11.71577 -11.27424 -11.20362 -11.02813 -10.97649 -10.80402 -10.71246 -10.43112 -9.96117 -9.77352 -9.67900 -9.44657 -9.24549 -9.02406 -8.42914 -8.15849 -6.44653 -6.16712 -3.87183 2.33155 2.51992 2.58453 3.01974 3.13223 3.25452 3.27949 3.32745 3.39546 3.66624 4.21943 4.24478 4.43484 4.57393 4.60187 4.69463 4.75909 4.84446 4.89731 5.03279 5.14968 5.18024 5.26709 5.34526 5.55448 5.57886 5.69443 5.71775 5.80130 5.92306 6.01082 6.02951 6.15457 6.21595 6.46934 6.69040 6.96265 7.25115 7.60422 7.63866 7.97765 8.14571 8.39505 8.64045 9.28049 10.90689 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.019155 B = 0.002462 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.435395 B =11367.863060 C =12522.668102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.149 4.149 11 C 0.533 3.467 12 O -0.510 6.510 13 N -0.619 5.619 14 C 0.106 3.894 15 C -0.133 4.133 16 C -0.123 4.123 17 C 0.133 3.867 18 H 0.094 0.906 19 N -0.729 5.729 20 C 0.506 3.494 21 O -0.480 6.480 22 C -0.165 4.165 23 C 0.511 3.489 24 N -0.862 5.862 25 O -0.491 6.491 26 C 0.105 3.895 27 H 0.268 0.732 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.398 0.602 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.403 0.597 40 H 0.398 0.602 41 H 0.098 0.902 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.619 -29.964 -0.481 32.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.299 4.299 11 C 0.321 3.679 12 O -0.383 6.383 13 N -0.356 5.356 14 C -0.018 4.018 15 C -0.172 4.172 16 C -0.161 4.161 17 C 0.027 3.973 18 H 0.112 0.888 19 N -0.384 5.384 20 C 0.289 3.711 21 O -0.350 6.350 22 C -0.208 4.208 23 C 0.293 3.707 24 N -0.428 5.428 25 O -0.361 6.361 26 C -0.019 4.019 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.232 0.768 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.234 0.766 40 H 0.226 0.774 41 H 0.116 0.884 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.854 -28.749 -1.163 30.413 hybrid contribution 2.318 0.289 0.330 2.359 sum 12.172 -28.461 -0.833 30.965 Atomic orbital electron populations 1.70021 1.05951 1.27416 1.46833 1.24995 0.95021 0.99012 0.94614 0.86172 0.79376 0.81628 0.78324 1.20285 1.20781 1.19719 1.22854 0.94863 0.91667 1.58905 0.90958 1.85489 1.04957 0.96282 1.96671 1.23543 1.06449 0.95311 1.04644 1.20371 0.86261 0.86177 0.75074 1.90724 1.15173 1.85080 1.47295 1.48035 1.06322 1.05380 1.75882 1.21752 0.80086 1.01804 0.98138 1.21902 1.00970 0.94469 0.99828 1.21784 0.94057 0.97680 1.02624 1.21322 0.94511 0.80777 1.00671 0.88806 1.45930 1.22381 1.09589 1.60472 1.20008 0.81616 0.89923 0.79545 1.90960 1.49698 1.54136 1.40247 1.21575 0.97694 0.97024 1.04539 1.20005 0.86980 0.83231 0.80460 1.43859 1.26411 1.09551 1.62964 1.90971 1.62262 1.38954 1.43959 1.21837 1.01650 0.81474 0.96956 0.92196 0.89280 0.89239 0.91416 0.88916 0.90050 0.90843 0.91181 0.91041 0.76846 0.86010 0.86104 0.76588 0.77414 0.88376 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.79 13.22 55.49 0.73 -26.05 16 2 C 0.07 2.12 5.49 -17.44 -0.10 2.03 16 3 Si 0.92 21.77 29.55 -169.99 -5.02 16.75 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.53 -15.54 9.50 30.94 0.29 -15.24 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 10 C -0.15 -3.14 4.50 36.00 0.16 -2.98 16 11 C 0.53 10.89 7.72 -10.99 -0.08 10.80 16 12 O -0.51 -12.75 15.27 5.56 0.08 -12.66 16 13 N -0.62 -9.28 2.97 -172.76 -0.51 -9.80 16 14 C 0.11 1.12 6.34 -3.71 -0.02 1.09 16 15 C -0.13 -1.09 6.08 -26.61 -0.16 -1.25 16 16 C -0.12 -0.87 5.35 -26.69 -0.14 -1.02 16 17 C 0.13 1.40 2.60 -67.79 -0.18 1.23 16 18 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 19 N -0.73 -5.76 5.08 -53.67 -0.27 -6.03 16 20 C 0.51 5.56 7.79 -10.99 -0.09 5.47 16 21 O -0.48 -8.60 13.84 -18.96 -0.26 -8.86 16 22 C -0.17 -0.95 6.19 -29.03 -0.18 -1.13 16 23 C 0.51 4.89 8.09 -10.98 -0.09 4.80 16 24 N -0.86 -4.04 8.87 31.22 0.28 -3.77 16 25 O -0.49 -8.11 15.02 -18.96 -0.28 -8.40 16 26 C 0.11 1.42 6.01 -3.69 -0.02 1.40 16 27 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 28 H 0.09 1.71 7.94 -51.91 -0.41 1.30 16 29 H 0.09 1.74 7.69 -51.92 -0.40 1.34 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.09 1.02 5.93 -51.93 -0.31 0.71 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.40 1.46 8.60 -40.82 -0.35 1.10 16 37 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.40 1.86 8.93 -40.82 -0.36 1.49 16 40 H 0.40 0.29 8.83 -40.82 -0.36 -0.07 16 41 H 0.10 1.75 7.01 -51.93 -0.36 1.39 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 365.16 15.07 5.50 5.50 Total: -1.00 -44.07 365.16 -8.46 -52.53 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -5.88 Total: -0.47 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -0.61 Total: 5.19 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.22 Total: -45.65 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.46 Total: -29.92 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -44.07 -8.46 -52.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070452411.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.795 kcal (2) G-P(sol) polarization free energy of solvation -44.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.54 seconds