Wall clock time and date at job start Tue Mar 31 2020 06:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86806 * 120.00002 * 2 1 4 4 H 1.48497 * 109.47306 * 270.00475 * 3 2 1 5 5 H 1.48510 * 109.46991 * 30.00206 * 3 2 1 6 6 H 1.48498 * 109.47313 * 149.99905 * 3 2 1 7 7 C 1.38792 * 120.00326 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00572 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00035 * 359.97438 * 7 2 1 10 10 C 1.80996 * 100.00430 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47395 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99935 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00202 * 180.02562 * 11 10 9 14 14 C 1.46924 * 120.62885 * 0.02562 * 13 11 10 15 15 C 1.53190 * 108.77354 * 233.61009 * 14 13 11 16 16 C 1.53043 * 109.31174 * 305.36332 * 15 14 13 17 17 C 1.53044 * 109.53747 * 61.36613 * 16 15 14 18 18 H 1.08999 * 109.49435 * 58.62433 * 17 16 15 19 19 N 1.46505 * 109.49527 * 178.68214 * 17 16 15 20 20 C 1.34774 * 119.99516 * 204.93511 * 19 17 16 21 21 O 1.21277 * 120.00513 * 0.02562 * 20 19 17 22 22 C 1.50700 * 119.99464 * 179.97438 * 20 19 17 23 23 C 1.50702 * 109.46869 * 179.97438 * 22 20 19 24 24 N 1.34777 * 119.99928 * 179.72354 * 23 22 20 25 25 O 1.21283 * 120.00262 * 0.02562 * 23 22 20 26 26 C 1.46933 * 120.60562 * 180.02562 * 13 11 10 27 27 H 0.97000 * 120.00372 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.47170 * 59.99817 * 10 9 7 29 29 H 1.08996 * 109.47317 * 300.00493 * 10 9 7 30 30 H 1.08999 * 109.58827 * 113.82482 * 14 13 11 31 31 H 1.08995 * 109.58653 * 353.39409 * 14 13 11 32 32 H 1.08998 * 109.49905 * 185.41593 * 15 14 13 33 33 H 1.08994 * 109.52672 * 65.32847 * 15 14 13 34 34 H 1.09000 * 109.46094 * 301.34697 * 16 15 14 35 35 H 1.09006 * 109.45790 * 181.38829 * 16 15 14 36 36 H 0.96995 * 119.99901 * 24.93885 * 19 17 16 37 37 H 1.09004 * 109.47210 * 60.00192 * 22 20 19 38 38 H 1.08994 * 109.47551 * 299.99844 * 22 20 19 39 39 H 0.96999 * 120.00047 * 180.27521 * 24 23 22 40 40 H 0.97000 * 120.00317 * 0.28382 * 24 23 22 41 41 H 1.08996 * 109.61589 * 6.62030 * 26 13 11 42 42 H 1.09002 * 109.56239 * 246.19248 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6528 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2019 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9875 -5.3026 -0.0017 12 8 0.7912 -5.5022 0.0000 13 7 2.8443 -6.3430 -0.0022 14 6 4.2960 -6.1172 -0.0026 15 6 4.9151 -6.8914 -1.1705 16 6 4.5080 -8.3635 -1.0743 17 6 2.9851 -8.4808 -1.1702 18 1 2.6459 -8.0509 -2.1127 19 7 2.5986 -9.8926 -1.1096 20 6 1.4357 -10.2970 -1.6577 21 8 0.7093 -9.4923 -2.2015 22 6 1.0384 -11.7494 -1.5958 23 6 -0.2938 -11.9351 -2.2755 24 7 -0.8484 -13.1613 -2.3474 25 8 -0.8642 -10.9821 -2.7626 26 6 2.3436 -7.7244 -0.0024 27 1 -0.4851 0.8400 0.0004 28 1 3.1252 -3.7317 0.8875 29 1 3.1238 -3.7309 -0.8924 30 1 4.7212 -6.4711 0.9366 31 1 4.5002 -5.0531 -0.1205 32 1 6.0012 -6.8106 -1.1256 33 1 4.5580 -6.4761 -2.1129 34 1 4.8443 -8.7717 -0.1212 35 1 4.9674 -8.9214 -1.8904 36 1 3.1797 -10.5363 -0.6750 37 1 0.9609 -12.0608 -0.5541 38 1 1.7917 -12.3540 -2.1008 39 1 -1.7040 -13.2816 -2.7884 40 1 -0.3922 -13.9237 -1.9581 41 1 1.2600 -7.7209 -0.1204 42 1 2.6093 -8.2091 0.9371 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070452411.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:59 Heat of formation + Delta-G solvation = -146.813436 kcal Electronic energy + Delta-G solvation = -25546.681351 eV Core-core repulsion = 21651.239696 eV Total energy + Delta-G solvation = -3895.441655 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.59463 -40.94867 -39.65759 -38.31970 -35.72421 -34.63400 -34.60053 -33.37873 -32.25841 -31.15931 -29.53009 -27.71084 -26.21795 -24.42496 -22.61222 -22.03540 -21.12600 -20.39501 -19.49976 -18.55096 -18.28432 -18.13691 -17.22197 -17.07031 -16.89646 -16.76161 -16.70693 -16.37794 -15.80612 -15.61755 -15.06314 -14.96822 -14.70944 -14.51580 -14.43045 -14.29559 -14.17324 -13.68549 -13.49153 -13.18659 -12.97381 -12.89706 -12.62150 -12.60450 -12.07249 -11.97731 -11.72490 -11.63773 -11.25546 -11.15507 -10.97181 -10.58072 -10.56717 -10.34163 -10.27246 -9.60429 -8.71055 -8.35239 -6.15335 1.21903 1.42396 1.42783 1.51317 1.55736 1.65973 1.76465 1.86876 2.20903 2.26521 2.80806 2.98657 3.23257 3.57937 3.62880 3.77046 3.89381 3.96559 4.05802 4.18530 4.22390 4.23205 4.39320 4.43677 4.49453 4.55389 4.58258 4.78113 4.80832 4.93909 5.06489 5.16256 5.29577 5.40082 5.41237 5.60909 5.95856 6.18625 6.24877 6.54595 6.64163 7.04965 7.11053 7.37254 7.51748 8.74375 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.019155 B = 0.002462 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.435395 B =11367.863060 C =12522.668102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.009 3.991 3 Si 1.004 2.996 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.254 1.254 7 C -0.542 4.542 8 H 0.086 0.914 9 S -0.164 6.164 10 C -0.117 4.117 11 C 0.526 3.474 12 O -0.573 6.573 13 N -0.605 5.605 14 C 0.093 3.907 15 C -0.130 4.130 16 C -0.111 4.111 17 C 0.139 3.861 18 H 0.045 0.955 19 N -0.705 5.705 20 C 0.494 3.506 21 O -0.562 6.562 22 C -0.149 4.149 23 C 0.500 3.500 24 N -0.836 5.836 25 O -0.576 6.576 26 C 0.105 3.895 27 H 0.271 0.729 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.049 0.951 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.425 0.575 37 H 0.167 0.833 38 H 0.173 0.827 39 H 0.404 0.596 40 H 0.421 0.579 41 H 0.042 0.958 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.740 -32.513 0.817 37.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.195 4.195 3 Si 0.825 3.175 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.177 1.177 7 C -0.690 4.690 8 H 0.105 0.895 9 S 0.063 5.937 10 C -0.268 4.268 11 C 0.314 3.686 12 O -0.451 6.451 13 N -0.340 5.340 14 C -0.028 4.028 15 C -0.168 4.168 16 C -0.149 4.149 17 C 0.032 3.968 18 H 0.064 0.936 19 N -0.361 5.361 20 C 0.280 3.720 21 O -0.438 6.438 22 C -0.191 4.191 23 C 0.284 3.716 24 N -0.402 5.402 25 O -0.453 6.453 26 C -0.019 4.019 27 H 0.080 0.920 28 H 0.132 0.868 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.106 0.894 32 H 0.138 0.862 33 H 0.068 0.932 34 H 0.124 0.876 35 H 0.112 0.888 36 H 0.264 0.736 37 H 0.184 0.816 38 H 0.190 0.810 39 H 0.235 0.765 40 H 0.254 0.746 41 H 0.061 0.939 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 15.106 -31.459 0.184 34.898 hybrid contribution 0.775 0.862 -0.057 1.161 sum 15.882 -30.597 0.127 34.473 Atomic orbital electron populations 1.70210 1.08178 1.28639 1.48024 1.26226 0.96003 1.03591 0.93689 0.84886 0.78242 0.75595 0.78806 1.19339 1.20324 1.17728 1.23184 0.95372 0.91552 1.58895 0.89546 1.85775 1.11109 0.99784 1.97045 1.23329 1.03173 0.93754 1.06559 1.20333 0.86012 0.87103 0.75188 1.90704 1.17861 1.85866 1.50695 1.48069 1.07926 1.04728 1.73272 1.22223 0.76877 1.02508 1.01172 1.21928 1.02883 0.94655 0.97369 1.21779 0.90269 0.97338 1.05485 1.21097 0.97150 0.81678 0.96861 0.93614 1.45693 1.21917 1.08949 1.59506 1.21051 0.81203 0.91708 0.78007 1.90953 1.52260 1.56724 1.43857 1.21654 0.96505 0.93632 1.07309 1.20776 0.88023 0.83212 0.79573 1.43676 1.26132 1.08996 1.61409 1.90957 1.64671 1.41851 1.47852 1.21952 0.98815 0.81156 0.99988 0.92018 0.86784 0.87410 0.87789 0.89351 0.86213 0.93221 0.87576 0.88839 0.73554 0.81557 0.81012 0.76510 0.74630 0.93943 0.88430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.43 13.22 21.65 0.29 -58.14 16 2 C 0.01 0.54 5.49 84.86 0.47 1.01 16 3 Si 1.00 44.71 29.55 68.60 2.03 46.73 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 6 H -0.25 -10.43 7.11 99.48 0.71 -9.72 16 7 C -0.54 -32.03 9.50 67.95 0.65 -31.39 16 8 H 0.09 4.67 7.80 -2.91 -0.02 4.65 16 9 S -0.16 -9.77 20.57 -56.49 -1.16 -10.93 16 10 C -0.12 -5.04 4.50 71.23 0.32 -4.72 16 11 C 0.53 22.47 7.72 87.65 0.68 23.14 16 12 O -0.57 -31.16 15.27 -3.04 -0.05 -31.21 16 13 N -0.61 -18.01 2.97 -818.86 -2.43 -20.45 16 14 C 0.09 1.68 6.34 86.36 0.55 2.23 16 15 C -0.13 -1.65 6.08 30.67 0.19 -1.46 16 16 C -0.11 -1.08 5.35 30.62 0.16 -0.91 16 17 C 0.14 2.81 2.60 45.08 0.12 2.93 16 18 H 0.05 1.40 7.58 -2.39 -0.02 1.38 16 19 N -0.71 -9.59 5.08 -442.12 -2.25 -11.84 16 20 C 0.49 10.76 7.79 87.66 0.68 11.45 16 21 O -0.56 -22.07 13.84 20.42 0.28 -21.78 16 22 C -0.15 -1.29 6.19 29.10 0.18 -1.11 16 23 C 0.50 9.41 8.09 87.66 0.71 10.12 16 24 N -0.84 -6.49 8.87 -173.53 -1.54 -8.03 16 25 O -0.58 -20.70 15.02 20.40 0.31 -20.39 16 26 C 0.10 2.84 6.01 86.37 0.52 3.36 16 27 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 28 H 0.11 4.30 7.94 -2.39 -0.02 4.28 16 29 H 0.11 4.20 7.69 -2.40 -0.02 4.18 16 30 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.09 1.70 5.93 -2.39 -0.01 1.68 16 32 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 36 H 0.43 1.02 8.60 -92.71 -0.80 0.22 16 37 H 0.17 0.00 8.14 -2.38 -0.02 -0.02 16 38 H 0.17 -0.24 8.14 -2.39 -0.02 -0.26 16 39 H 0.40 3.46 8.93 -92.71 -0.83 2.63 16 40 H 0.42 -0.80 8.83 -92.71 -0.82 -1.62 16 41 H 0.04 1.66 7.01 -2.39 -0.02 1.64 16 42 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -112.88 365.16 -0.67 -113.54 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -1.36 Total: 7.86 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 5.22 Total: 14.64 kcal Atomic # 7 Polarization: -92.53 SS G_CDS: -5.93 Total: -98.46 kcal Atomic # 8 Polarization: -73.93 SS G_CDS: 0.54 Total: -73.39 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: -9.77 SS G_CDS: -1.16 Total: -10.93 kcal Total: -112.88 -0.67 -113.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070452411.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.270 kcal (2) G-P(sol) polarization free energy of solvation -112.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -113.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds