Wall clock time and date at job start Tue Mar 31 2020 06:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86802 * 119.99937 * 2 1 4 4 H 1.48495 * 109.46863 * 240.00031 * 3 2 1 5 5 H 1.48497 * 109.47100 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46574 * 120.00005 * 3 2 1 7 7 C 1.38801 * 119.99603 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99242 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00197 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99859 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47136 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00190 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00167 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00409 * 179.97438 * 13 11 10 15 15 H 1.08997 * 109.49842 * 325.07042 * 14 13 11 16 16 C 1.53039 * 109.50113 * 205.00273 * 14 13 11 17 17 C 1.53040 * 109.53579 * 178.65186 * 16 14 13 18 18 C 1.53191 * 109.31454 * 61.36967 * 17 16 14 19 19 N 1.46927 * 108.77356 * 305.36260 * 18 17 16 20 20 C 1.34777 * 120.63303 * 233.58945 * 19 18 17 21 21 O 1.21283 * 120.00463 * 179.97438 * 20 19 18 22 22 C 1.50700 * 119.99675 * 359.72079 * 20 19 18 23 23 C 1.50703 * 109.47148 * 180.28037 * 22 20 19 24 24 N 1.34775 * 120.00069 * 180.02562 * 23 22 20 25 25 O 1.21283 * 120.00006 * 359.97438 * 23 22 20 26 26 C 1.46925 * 118.74028 * 53.85668 * 19 18 17 27 27 H 0.97000 * 119.99981 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47436 * 59.99868 * 10 9 7 29 29 H 1.09000 * 109.47366 * 300.00047 * 10 9 7 30 30 H 0.97002 * 119.99824 * 0.02562 * 13 11 10 31 31 H 1.08996 * 109.46168 * 58.63559 * 16 14 13 32 32 H 1.09000 * 109.46038 * 298.66855 * 16 14 13 33 33 H 1.08993 * 109.50223 * 301.41324 * 17 16 14 34 34 H 1.09007 * 109.49588 * 181.31559 * 17 16 14 35 35 H 1.08996 * 109.59004 * 185.57535 * 18 17 16 36 36 H 1.09005 * 109.58967 * 65.14733 * 18 17 16 37 37 H 1.09009 * 109.47352 * 300.27556 * 22 20 19 38 38 H 1.08998 * 109.47585 * 60.27844 * 22 20 19 39 39 H 0.97002 * 120.00050 * 359.97438 * 24 23 22 40 40 H 0.96996 * 120.00041 * 180.02562 * 24 23 22 41 41 H 1.09005 * 109.58329 * 65.93269 * 26 19 18 42 42 H 1.09000 * 109.58776 * 186.35431 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3432 0.0008 14 6 2.3304 -7.7151 0.0019 15 1 1.4145 -7.7602 0.5912 16 6 3.3763 -8.6517 0.6110 17 6 2.8273 -10.0799 0.6435 18 6 2.5376 -10.5440 -0.7874 19 7 1.6453 -9.5690 -1.4293 20 6 0.4914 -9.9666 -2.0011 21 8 -0.2369 -9.1519 -2.5273 22 6 0.1089 -11.4242 -1.9916 23 6 -1.2117 -11.6016 -2.6957 24 7 -1.7551 -12.8296 -2.8094 25 8 -1.7859 -10.6391 -3.1591 26 6 2.0376 -8.1532 -1.4412 27 1 -0.4850 0.8400 -0.0004 28 1 3.1245 -3.7314 0.8905 29 1 3.1244 -3.7314 -0.8894 30 1 3.8008 -6.1835 0.0004 31 1 3.6064 -8.3280 1.6261 32 1 4.2832 -8.6250 0.0071 33 1 1.9068 -10.1027 1.2267 34 1 3.5635 -10.7424 1.0987 35 1 2.0549 -11.5210 -0.7641 36 1 3.4710 -10.6086 -1.3467 37 1 0.8754 -12.0044 -2.5054 38 1 0.0208 -11.7701 -0.9617 39 1 -1.2960 -13.5994 -2.4384 40 1 -2.6049 -12.9439 -3.2629 41 1 2.9311 -8.0267 -2.0527 42 1 1.2250 -7.5522 -1.8492 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070573989.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:56 Heat of formation + Delta-G solvation = -108.362880 kcal Electronic energy + Delta-G solvation = -25489.229915 eV Core-core repulsion = 21595.455600 eV Total energy + Delta-G solvation = -3893.774314 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.78044 -39.63878 -38.73431 -37.23994 -34.59433 -33.91039 -32.51725 -32.38425 -31.35554 -30.11077 -28.21925 -25.65982 -25.44440 -23.39274 -21.99946 -20.82985 -20.30927 -19.20038 -17.90598 -17.77798 -17.58562 -16.49062 -16.29992 -16.13252 -15.99873 -15.65002 -15.14237 -14.76827 -14.53018 -14.51018 -14.05317 -13.98030 -13.74182 -13.38242 -13.24799 -13.17029 -12.95343 -12.52830 -12.31132 -12.14138 -11.72559 -11.49890 -11.31908 -11.00727 -11.00623 -10.84716 -10.72348 -10.32946 -9.94871 -9.78670 -9.63056 -9.37553 -9.20894 -9.01820 -8.62285 -8.18509 -6.45291 -6.17068 -3.87726 2.34693 2.48816 2.58801 3.06237 3.12349 3.26343 3.27335 3.31266 3.36467 3.73834 4.06277 4.24239 4.40262 4.45823 4.47408 4.55214 4.74904 4.78743 4.82785 4.98872 5.07027 5.12407 5.17589 5.26173 5.36528 5.45365 5.61895 5.64856 5.70512 5.91590 5.97121 6.03929 6.16511 6.21234 6.48153 6.65618 6.97023 7.17943 7.62937 7.71138 7.98250 8.15230 8.38954 8.64288 9.27615 10.90253 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.019057 B = 0.002383 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.939512 B =11749.515848 C =12940.846394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.530 3.470 12 O -0.509 6.509 13 N -0.734 5.734 14 C 0.135 3.865 15 H 0.092 0.908 16 C -0.127 4.127 17 C -0.132 4.132 18 C 0.104 3.896 19 N -0.615 5.615 20 C 0.510 3.490 21 O -0.482 6.482 22 C -0.164 4.164 23 C 0.512 3.488 24 N -0.861 5.861 25 O -0.491 6.491 26 C 0.103 3.897 27 H 0.269 0.731 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.399 0.601 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.398 0.602 40 H 0.403 0.597 41 H 0.068 0.932 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.742 -31.748 -0.028 33.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.303 4.303 11 C 0.316 3.684 12 O -0.382 6.382 13 N -0.389 5.389 14 C 0.029 3.971 15 H 0.110 0.890 16 C -0.165 4.165 17 C -0.171 4.171 18 C -0.019 4.019 19 N -0.352 5.352 20 C 0.295 3.705 21 O -0.353 6.353 22 C -0.207 4.207 23 C 0.294 3.706 24 N -0.428 5.428 25 O -0.362 6.362 26 C -0.021 4.021 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.233 0.767 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.226 0.774 40 H 0.234 0.766 41 H 0.086 0.914 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.885 -30.712 -0.582 31.479 hybrid contribution 2.536 0.726 0.136 2.641 sum 9.421 -29.986 -0.446 31.434 Atomic orbital electron populations 1.70016 1.05944 1.27551 1.46714 1.25002 0.95028 0.99020 0.94586 0.86222 0.79220 0.81283 0.78749 1.19948 1.20828 1.19974 1.22826 0.94851 0.91713 1.59072 0.90993 1.85482 1.04774 0.96243 1.96703 1.23526 1.06612 0.95316 1.04892 1.20385 0.86623 0.86324 0.75021 1.90747 1.15280 1.85424 1.46741 1.45987 1.09917 1.04869 1.78124 1.21242 0.98375 0.81383 0.96124 0.89041 1.21809 0.98242 0.94501 1.01997 1.21890 1.02221 0.96422 0.96549 1.21790 0.94542 0.92083 0.93450 1.48044 1.21137 1.08209 1.57847 1.19960 0.81029 0.90050 0.79482 1.90933 1.49068 1.53728 1.41540 1.21618 0.97760 0.97191 1.04146 1.20025 0.86870 0.83313 0.80442 1.43852 1.27063 1.08942 1.62912 1.90962 1.61584 1.38442 1.45178 1.22117 1.01996 0.81060 0.96936 0.92127 0.89241 0.89187 0.76728 0.90654 0.91093 0.90961 0.90032 0.89733 0.91025 0.86148 0.86069 0.77421 0.76600 0.91389 0.87968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.77 13.22 55.49 0.73 -26.04 16 2 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.79 29.55 -169.99 -5.02 16.76 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.54 -15.57 9.50 30.94 0.29 -15.27 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.13 6.16 36.00 0.22 -2.91 16 11 C 0.53 10.10 7.82 -10.99 -0.09 10.02 16 12 O -0.51 -12.10 15.53 5.56 0.09 -12.02 16 13 N -0.73 -9.64 5.08 -53.47 -0.27 -9.91 16 14 C 0.14 1.58 2.62 -67.59 -0.18 1.40 16 15 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 16 C -0.13 -0.89 5.35 -26.69 -0.14 -1.03 16 17 C -0.13 -0.66 6.08 -26.61 -0.16 -0.82 16 18 C 0.10 0.51 6.34 -3.71 -0.02 0.49 16 19 N -0.62 -6.16 2.97 -172.50 -0.51 -6.67 16 20 C 0.51 6.37 7.69 -10.98 -0.08 6.29 16 21 O -0.48 -9.22 13.59 -18.96 -0.26 -9.48 16 22 C -0.16 -1.11 4.53 -29.03 -0.13 -1.24 16 23 C 0.51 5.12 8.09 -10.98 -0.09 5.03 16 24 N -0.86 -4.22 8.87 31.22 0.28 -3.94 16 25 O -0.49 -8.31 15.02 -18.96 -0.28 -8.59 16 26 C 0.10 1.29 6.04 -3.49 -0.02 1.27 16 27 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 28 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 29 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 30 H 0.40 3.88 8.60 -40.82 -0.35 3.53 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.08 0.18 5.94 -51.93 -0.31 -0.13 16 36 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.12 0.36 7.94 -51.92 -0.41 -0.05 16 38 H 0.12 0.42 7.69 -51.93 -0.40 0.02 16 39 H 0.40 0.36 8.83 -40.82 -0.36 -0.01 16 40 H 0.40 1.89 8.93 -40.82 -0.36 1.53 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.10 1.80 7.00 -51.93 -0.36 1.44 16 LS Contribution 365.20 15.07 5.50 5.50 Total: -1.00 -43.88 365.20 -8.34 -52.21 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -5.88 Total: 0.76 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -0.50 Total: 5.25 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: 0.23 Total: -46.56 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -0.46 Total: -30.08 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -43.88 -8.34 -52.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070573989.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.149 kcal (2) G-P(sol) polarization free energy of solvation -43.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds