Wall clock time and date at job start Tue Mar 31 2020 06:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86802 * 119.99937 * 2 1 4 4 H 1.48495 * 109.46863 * 240.00031 * 3 2 1 5 5 H 1.48497 * 109.47100 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46574 * 120.00005 * 3 2 1 7 7 C 1.38801 * 119.99603 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99242 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00197 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99859 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47136 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00190 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00167 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00409 * 179.97438 * 13 11 10 15 15 H 1.08997 * 109.49842 * 325.07042 * 14 13 11 16 16 C 1.53039 * 109.50113 * 205.00273 * 14 13 11 17 17 C 1.53040 * 109.53579 * 178.65186 * 16 14 13 18 18 C 1.53191 * 109.31454 * 61.36967 * 17 16 14 19 19 N 1.46927 * 108.77356 * 305.36260 * 18 17 16 20 20 C 1.34777 * 120.63303 * 233.58945 * 19 18 17 21 21 O 1.21283 * 120.00463 * 179.97438 * 20 19 18 22 22 C 1.50700 * 119.99675 * 359.72079 * 20 19 18 23 23 C 1.50703 * 109.47148 * 180.28037 * 22 20 19 24 24 N 1.34775 * 120.00069 * 180.02562 * 23 22 20 25 25 O 1.21283 * 120.00006 * 359.97438 * 23 22 20 26 26 C 1.46925 * 118.74028 * 53.85668 * 19 18 17 27 27 H 0.97000 * 119.99981 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47436 * 59.99868 * 10 9 7 29 29 H 1.09000 * 109.47366 * 300.00047 * 10 9 7 30 30 H 0.97002 * 119.99824 * 0.02562 * 13 11 10 31 31 H 1.08996 * 109.46168 * 58.63559 * 16 14 13 32 32 H 1.09000 * 109.46038 * 298.66855 * 16 14 13 33 33 H 1.08993 * 109.50223 * 301.41324 * 17 16 14 34 34 H 1.09007 * 109.49588 * 181.31559 * 17 16 14 35 35 H 1.08996 * 109.59004 * 185.57535 * 18 17 16 36 36 H 1.09005 * 109.58967 * 65.14733 * 18 17 16 37 37 H 1.09009 * 109.47352 * 300.27556 * 22 20 19 38 38 H 1.08998 * 109.47585 * 60.27844 * 22 20 19 39 39 H 0.97002 * 120.00050 * 359.97438 * 24 23 22 40 40 H 0.96996 * 120.00041 * 180.02562 * 24 23 22 41 41 H 1.09005 * 109.58329 * 65.93269 * 26 19 18 42 42 H 1.09000 * 109.58776 * 186.35431 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3432 0.0008 14 6 2.3304 -7.7151 0.0019 15 1 1.4145 -7.7602 0.5912 16 6 3.3763 -8.6517 0.6110 17 6 2.8273 -10.0799 0.6435 18 6 2.5376 -10.5440 -0.7874 19 7 1.6453 -9.5690 -1.4293 20 6 0.4914 -9.9666 -2.0011 21 8 -0.2369 -9.1519 -2.5273 22 6 0.1089 -11.4242 -1.9916 23 6 -1.2117 -11.6016 -2.6957 24 7 -1.7551 -12.8296 -2.8094 25 8 -1.7859 -10.6391 -3.1591 26 6 2.0376 -8.1532 -1.4412 27 1 -0.4850 0.8400 -0.0004 28 1 3.1245 -3.7314 0.8905 29 1 3.1244 -3.7314 -0.8894 30 1 3.8008 -6.1835 0.0004 31 1 3.6064 -8.3280 1.6261 32 1 4.2832 -8.6250 0.0071 33 1 1.9068 -10.1027 1.2267 34 1 3.5635 -10.7424 1.0987 35 1 2.0549 -11.5210 -0.7641 36 1 3.4710 -10.6086 -1.3467 37 1 0.8754 -12.0044 -2.5054 38 1 0.0208 -11.7701 -0.9617 39 1 -1.2960 -13.5994 -2.4384 40 1 -2.6049 -12.9439 -3.2629 41 1 2.9311 -8.0267 -2.0527 42 1 1.2250 -7.5522 -1.8492 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070573989.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:55 Heat of formation + Delta-G solvation = -146.832039 kcal Electronic energy + Delta-G solvation = -25490.898063 eV Core-core repulsion = 21595.455600 eV Total energy + Delta-G solvation = -3895.442462 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.65625 -40.80055 -39.79111 -38.23673 -35.74873 -34.63994 -34.59801 -33.35676 -32.22788 -31.18339 -29.43655 -27.67167 -26.38673 -24.20139 -22.74479 -21.72922 -21.59335 -20.02632 -19.74797 -18.64025 -18.19119 -17.84773 -17.48006 -16.94882 -16.89413 -16.86235 -16.65875 -16.24077 -15.88842 -15.56355 -15.25630 -14.93387 -14.68252 -14.53659 -14.47312 -14.13796 -14.00947 -13.74830 -13.51815 -13.18789 -12.96803 -12.87304 -12.68668 -12.59664 -12.05140 -11.96799 -11.77287 -11.60939 -11.17157 -11.14044 -10.95805 -10.60986 -10.58464 -10.37712 -10.28882 -9.55543 -8.70076 -8.35473 -6.15066 1.23874 1.43352 1.43874 1.51827 1.55938 1.63149 1.74655 1.81030 2.26049 2.31062 2.72932 2.98274 3.30762 3.39417 3.71319 3.81019 3.92583 4.00656 4.11639 4.14910 4.22129 4.29006 4.35384 4.37446 4.47323 4.60126 4.67239 4.77248 4.83457 4.96131 5.10399 5.18944 5.27550 5.39675 5.44143 5.59917 5.95758 6.18208 6.38669 6.49207 6.57214 7.04814 7.22561 7.25067 7.49779 8.73755 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.019057 B = 0.002383 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.939512 B =11749.515848 C =12940.846394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.009 3.991 3 Si 1.003 2.997 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.259 1.259 7 C -0.545 4.545 8 H 0.086 0.914 9 S -0.163 6.163 10 C -0.126 4.126 11 C 0.530 3.470 12 O -0.567 6.567 13 N -0.705 5.705 14 C 0.137 3.863 15 H 0.052 0.948 16 C -0.119 4.119 17 C -0.129 4.129 18 C 0.095 3.905 19 N -0.610 5.610 20 C 0.493 3.507 21 O -0.567 6.567 22 C -0.148 4.148 23 C 0.502 3.498 24 N -0.834 5.834 25 O -0.575 6.575 26 C 0.105 3.895 27 H 0.271 0.729 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.421 0.579 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.098 0.902 37 H 0.173 0.827 38 H 0.166 0.834 39 H 0.422 0.578 40 H 0.405 0.595 41 H 0.089 0.911 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.390 -35.014 1.081 37.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.195 4.195 3 Si 0.824 3.176 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.183 1.183 7 C -0.692 4.692 8 H 0.104 0.896 9 S 0.064 5.936 10 C -0.277 4.277 11 C 0.316 3.684 12 O -0.445 6.445 13 N -0.360 5.360 14 C 0.031 3.969 15 H 0.070 0.930 16 C -0.157 4.157 17 C -0.167 4.167 18 C -0.025 4.025 19 N -0.345 5.345 20 C 0.281 3.719 21 O -0.444 6.444 22 C -0.190 4.190 23 C 0.286 3.714 24 N -0.400 5.400 25 O -0.453 6.453 26 C -0.020 4.020 27 H 0.080 0.920 28 H 0.133 0.867 29 H 0.129 0.871 30 H 0.259 0.741 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.077 0.923 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.116 0.884 37 H 0.190 0.810 38 H 0.183 0.817 39 H 0.254 0.746 40 H 0.236 0.764 41 H 0.107 0.893 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 11.657 -34.132 0.578 36.073 hybrid contribution 1.151 1.540 -0.193 1.932 sum 12.808 -32.592 0.385 35.021 Atomic orbital electron populations 1.70207 1.08149 1.28691 1.47983 1.26223 0.95998 1.03590 0.93710 0.84945 0.77723 0.75332 0.79613 1.18576 1.20501 1.18327 1.23172 0.95378 0.91734 1.58953 0.89599 1.85760 1.11014 0.99707 1.97077 1.23353 1.03355 0.93964 1.07028 1.20227 0.86283 0.87039 0.74821 1.90741 1.17879 1.86098 1.49799 1.45705 1.10329 1.04439 1.75515 1.21379 0.98883 0.81179 0.95469 0.93008 1.21843 0.97255 0.94386 1.02179 1.21947 1.02699 0.95419 0.96674 1.22314 0.94957 0.92174 0.93085 1.48214 1.21285 1.07801 1.57175 1.21111 0.80585 0.92070 0.78127 1.90913 1.51786 1.56374 1.45329 1.21706 0.97050 0.93336 1.06902 1.20708 0.87718 0.83390 0.79620 1.43640 1.26783 1.08301 1.61286 1.90949 1.63962 1.41379 1.48984 1.21854 1.00230 0.82623 0.97286 0.92026 0.86667 0.87072 0.74106 0.90060 0.88347 0.92279 0.86022 0.85732 0.88419 0.80973 0.81660 0.74562 0.76397 0.89310 0.94505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.43 13.22 21.65 0.29 -58.14 16 2 C 0.01 0.54 5.49 84.86 0.47 1.01 16 3 Si 1.00 44.80 29.55 68.60 2.03 46.83 16 4 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.54 -32.09 9.50 67.95 0.65 -31.45 16 8 H 0.09 4.63 7.80 -2.91 -0.02 4.61 16 9 S -0.16 -9.54 20.57 -56.49 -1.16 -10.70 16 10 C -0.13 -5.19 6.16 71.23 0.44 -4.76 16 11 C 0.53 20.96 7.82 87.66 0.69 21.64 16 12 O -0.57 -29.24 15.53 -3.03 -0.05 -29.29 16 13 N -0.71 -18.14 5.08 -441.48 -2.24 -20.39 16 14 C 0.14 3.17 2.62 45.22 0.12 3.29 16 15 H 0.05 1.64 7.58 -2.39 -0.02 1.62 16 16 C -0.12 -1.22 5.35 30.62 0.16 -1.06 16 17 C -0.13 -0.66 6.08 30.67 0.19 -0.48 16 18 C 0.09 0.45 6.34 86.36 0.55 1.00 16 19 N -0.61 -11.49 2.97 -818.05 -2.43 -13.91 16 20 C 0.49 12.53 7.69 87.66 0.67 13.20 16 21 O -0.57 -24.08 13.59 20.40 0.28 -23.80 16 22 C -0.15 -1.58 4.53 29.10 0.13 -1.44 16 23 C 0.50 9.84 8.09 87.66 0.71 10.55 16 24 N -0.83 -6.54 8.87 -173.53 -1.54 -8.08 16 25 O -0.58 -21.13 15.02 20.40 0.31 -20.83 16 26 C 0.11 2.73 6.04 86.51 0.52 3.25 16 27 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 28 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 29 H 0.11 4.11 8.14 -2.40 -0.02 4.10 16 30 H 0.42 7.09 8.60 -92.71 -0.80 6.29 16 31 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.12 -0.18 8.14 -2.38 -0.02 -0.20 16 35 H 0.12 -0.36 5.94 -2.39 -0.01 -0.37 16 36 H 0.10 0.09 8.14 -2.38 -0.02 0.07 16 37 H 0.17 0.03 7.94 -2.38 -0.02 0.02 16 38 H 0.17 0.30 7.69 -2.39 -0.02 0.28 16 39 H 0.42 -0.86 8.83 -92.71 -0.82 -1.68 16 40 H 0.41 3.40 8.93 -92.71 -0.83 2.58 16 41 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 42 H 0.04 1.46 7.00 -2.39 -0.02 1.44 16 Total: -1.00 -113.09 365.20 -0.59 -113.68 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -1.36 Total: 9.89 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 5.29 Total: 14.75 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -5.92 Total: -100.53 kcal Atomic # 8 Polarization: -74.45 SS G_CDS: 0.54 Total: -73.91 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: -9.54 SS G_CDS: -1.16 Total: -10.70 kcal Total: -113.09 -0.59 -113.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070573989.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.156 kcal (2) G-P(sol) polarization free energy of solvation -113.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -113.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds