Wall clock time and date at job start Tue Mar 31 2020 07:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 110.78356 * 2 1 4 4 C 1.54327 * 110.72042 * 236.75772 * 2 1 3 5 5 N 1.47022 * 107.27336 * 219.44597 * 4 2 1 6 6 C 1.34776 * 125.64758 * 178.97550 * 5 4 2 7 7 O 1.21276 * 120.00039 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99965 * 179.97438 * 6 5 4 9 9 S 1.81001 * 109.47021 * 180.02562 * 8 6 5 10 10 C 1.76204 * 99.99734 * 180.02562 * 9 8 6 11 11 H 1.07996 * 120.00033 * 359.97438 * 10 9 8 12 12 C 1.38798 * 119.99527 * 180.02562 * 10 9 8 13 13 N 1.31631 * 120.00501 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99744 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47272 * 89.99690 * 14 12 10 16 16 H 1.48504 * 109.47102 * 209.99980 * 14 12 10 17 17 H 1.48502 * 109.47312 * 329.99730 * 14 12 10 18 18 C 1.47425 * 108.70334 * 358.94217 * 5 4 2 19 19 C 1.54915 * 104.83334 * 24.12789 * 18 5 4 20 20 H 1.08995 * 111.00392 * 204.91661 * 19 18 5 21 21 N 1.46503 * 111.00354 * 81.06431 * 19 18 5 22 22 C 1.34770 * 119.99773 * 92.80200 * 21 19 18 23 23 O 1.21277 * 120.00458 * 0.02562 * 22 21 19 24 24 C 1.50701 * 119.99953 * 179.97438 * 22 21 19 25 25 C 1.50698 * 109.47460 * 180.02562 * 24 22 21 26 26 N 1.34779 * 120.00183 * 180.02562 * 25 24 22 27 27 O 1.21283 * 119.99660 * 0.02562 * 25 24 22 28 28 H 1.08999 * 109.47239 * 181.78845 * 1 2 3 29 29 H 1.09007 * 109.46791 * 301.78830 * 1 2 3 30 30 H 1.08997 * 109.47298 * 61.78039 * 1 2 3 31 31 H 1.08997 * 109.87800 * 338.86780 * 4 2 1 32 32 H 1.08998 * 109.87662 * 100.02567 * 4 2 1 33 33 H 1.08997 * 109.46961 * 300.00240 * 8 6 5 34 34 H 1.09003 * 109.46873 * 60.00246 * 8 6 5 35 35 H 0.96998 * 119.99993 * 180.02562 * 13 12 10 36 36 H 1.08997 * 110.36855 * 142.96531 * 18 5 4 37 37 H 1.08997 * 110.36655 * 265.29403 * 18 5 4 38 38 H 0.97000 * 120.00029 * 272.80439 * 21 19 18 39 39 H 1.09002 * 109.46996 * 300.00268 * 24 22 21 40 40 H 1.08997 * 109.46923 * 59.99968 * 24 22 21 41 41 H 0.96996 * 119.99771 * 359.97438 * 26 25 24 42 42 H 0.97001 * 119.99748 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2445 -1.5508 -0.7390 6 6 3.9922 -2.3838 -1.4897 7 8 3.7196 -2.5559 -2.6588 8 6 5.1677 -3.1003 -0.8767 9 16 5.9635 -4.1359 -2.1298 10 6 7.2634 -4.8356 -1.1679 11 1 7.3662 -4.5718 -0.1257 12 6 8.1560 -5.7249 -1.7501 13 7 8.0311 -6.0461 -3.0205 14 14 9.5346 -6.4662 -0.7306 15 1 9.0656 -7.7303 -0.1084 16 1 10.7009 -6.7481 -1.6056 17 1 9.9335 -5.5094 0.3328 18 6 3.4632 -1.2499 0.6876 19 6 2.0789 -0.7955 1.2139 20 1 2.1849 -0.1519 2.0871 21 7 1.2270 -1.9488 1.5145 22 6 1.2025 -2.4618 2.7606 23 8 1.8852 -1.9684 3.6331 24 6 0.3257 -3.6478 3.0700 25 6 0.4803 -4.0217 4.5217 26 7 -0.2127 -5.0612 5.0274 27 8 1.2284 -3.3872 5.2349 28 1 -0.3634 -1.0271 0.0321 29 1 -0.3633 0.5414 0.8736 30 1 -0.3634 0.4859 -0.9055 31 1 1.3129 -1.4758 -1.5775 32 1 2.3740 -0.1025 -1.9977 33 1 5.8838 -2.3689 -0.5020 34 1 4.8227 -3.7259 -0.0534 35 1 8.6547 -6.6679 -3.4271 36 1 3.7959 -2.1427 1.2170 37 1 4.1931 -0.4480 0.7985 38 1 0.6807 -2.3433 0.8168 39 1 -0.7149 -3.3925 2.8698 40 1 0.6200 -4.4903 2.4441 41 1 -0.8113 -5.5684 4.4570 42 1 -0.1135 -5.3015 5.9619 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071656335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:39 Heat of formation + Delta-G solvation = -104.507909 kcal Electronic energy + Delta-G solvation = -25833.344615 eV Core-core repulsion = 21939.737464 eV Total energy + Delta-G solvation = -3893.607150 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -40.83029 -39.88433 -38.63821 -37.41134 -34.21199 -33.84935 -32.74985 -32.42393 -30.89729 -29.48072 -28.69156 -26.18817 -25.40789 -23.43850 -22.05675 -20.58112 -20.24150 -19.33253 -18.03336 -17.70685 -17.51565 -16.76534 -16.55611 -16.21103 -16.13129 -15.48140 -14.92645 -14.79432 -14.51137 -14.39968 -13.99959 -13.78599 -13.70525 -13.64411 -13.22316 -12.99728 -12.60756 -12.50821 -12.35506 -12.29937 -11.94010 -11.57133 -11.27666 -11.08489 -11.05247 -11.00418 -10.74888 -10.46683 -9.95582 -9.81332 -9.70746 -9.52619 -9.30951 -9.06031 -8.49373 -8.24051 -6.50451 -6.21363 -3.92093 2.31648 2.50690 2.62160 2.89089 3.04404 3.23375 3.27232 3.31737 3.37019 3.61124 4.02896 4.21143 4.23242 4.30736 4.51685 4.61449 4.78395 4.89042 4.92881 4.98752 5.05510 5.13924 5.23008 5.34226 5.38859 5.51498 5.59135 5.62692 5.68775 5.75498 5.85419 5.93145 6.15212 6.22607 6.39284 6.47288 6.97052 7.21937 7.60328 7.62593 7.94773 8.09774 8.36198 8.53423 9.24271 10.86052 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010161 B = 0.003320 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.929740 B = 8431.740101 C =10505.111060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 H 0.100 0.900 4 C 0.111 3.889 5 N -0.625 5.625 6 C 0.549 3.451 7 O -0.516 6.516 8 C -0.147 4.147 9 S -0.060 6.060 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.089 3.911 19 C 0.138 3.862 20 H 0.114 0.886 21 N -0.720 5.720 22 C 0.514 3.486 23 O -0.493 6.493 24 C -0.169 4.169 25 C 0.516 3.484 26 N -0.861 5.861 27 O -0.497 6.497 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.268 0.732 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.401 0.599 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.399 0.601 42 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.261 8.217 11.387 26.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.130 4.130 3 H 0.118 0.882 4 C -0.013 4.013 5 N -0.363 5.363 6 C 0.338 3.662 7 O -0.390 6.390 8 C -0.298 4.298 9 S 0.166 5.834 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.744 3.256 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.196 1.196 18 C -0.036 4.036 19 C 0.032 3.968 20 H 0.131 0.869 21 N -0.374 5.374 22 C 0.298 3.702 23 O -0.364 6.364 24 C -0.212 4.212 25 C 0.298 3.702 26 N -0.426 5.426 27 O -0.368 6.368 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.236 0.764 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.228 0.772 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -21.467 8.711 10.411 25.398 hybrid contribution 0.655 -0.983 1.642 2.023 sum -20.812 7.728 12.053 25.261 Atomic orbital electron populations 1.21694 0.93346 1.02130 1.02494 1.22570 0.96958 0.99897 0.93599 0.88171 1.21961 0.88308 0.94700 0.96287 1.48500 1.30732 1.46026 1.11020 1.20018 0.82680 0.77713 0.85799 1.90707 1.69844 1.62485 1.15942 1.23512 0.97840 1.02890 1.05508 1.85346 1.33689 1.52183 1.12164 1.22867 1.15351 1.31354 0.98728 0.90929 1.24981 0.97607 0.95674 0.95234 1.70017 1.36691 1.32746 1.10892 0.86175 0.80457 0.79336 0.79601 1.20262 1.20724 1.19635 1.22770 0.97068 1.02056 0.81686 1.22068 0.89184 0.87398 0.98171 0.86862 1.45886 1.46962 1.33328 1.11273 1.19932 0.83206 0.84614 0.82427 1.90881 1.40906 1.59369 1.45294 1.21602 1.03044 0.99969 0.96598 1.19962 0.80400 0.80474 0.89385 1.43856 1.48652 1.34589 1.15540 1.90925 1.35257 1.50478 1.60184 0.92422 0.91870 0.91799 0.91451 0.91236 0.89293 0.89445 0.92195 0.89855 0.90234 0.76381 0.86018 0.85718 0.77248 0.76603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 8.80 37.16 0.33 -0.39 16 2 C -0.11 -0.79 3.42 -88.78 -0.30 -1.09 16 3 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 4 C 0.11 1.16 6.46 -3.06 -0.02 1.14 16 5 N -0.63 -8.65 3.33 -170.52 -0.57 -9.22 16 6 C 0.55 10.51 7.87 -10.99 -0.09 10.42 16 7 O -0.52 -11.77 16.19 5.56 0.09 -11.68 16 8 C -0.15 -3.08 5.16 36.00 0.19 -2.90 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.53 -15.45 9.50 30.94 0.29 -15.16 16 11 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 12 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 13 N -0.87 -26.30 13.22 55.49 0.73 -25.56 16 14 Si 0.92 21.71 29.55 -169.99 -5.02 16.68 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 18 C 0.09 1.02 6.38 -2.53 -0.02 1.01 16 19 C 0.14 1.22 3.18 -65.77 -0.21 1.01 16 20 H 0.11 1.06 7.54 -51.93 -0.39 0.66 16 21 N -0.72 -5.84 4.51 -51.72 -0.23 -6.07 16 22 C 0.51 5.32 7.82 -10.99 -0.09 5.24 16 23 O -0.49 -7.64 13.82 -18.96 -0.26 -7.90 16 24 C -0.17 -1.08 6.19 -29.04 -0.18 -1.26 16 25 C 0.52 4.92 8.09 -10.99 -0.09 4.83 16 26 N -0.86 -4.42 8.87 31.22 0.28 -4.14 16 27 O -0.50 -7.74 15.02 -18.96 -0.28 -8.03 16 28 H 0.06 0.26 6.34 -51.93 -0.33 -0.06 16 29 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.70 7.82 -51.93 -0.41 0.30 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 34 H 0.09 1.74 7.85 -51.92 -0.41 1.33 16 35 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.08 1.10 7.48 -51.93 -0.39 0.71 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.40 2.45 7.13 -40.82 -0.29 2.16 16 39 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.40 0.65 8.83 -40.82 -0.36 0.29 16 42 H 0.40 1.94 8.93 -40.82 -0.36 1.57 16 LS Contribution 367.93 15.07 5.54 5.54 Total: -1.00 -41.41 367.93 -8.08 -49.49 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.86 Total: -0.14 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -0.28 Total: 4.89 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.21 Total: -44.99 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.46 Total: -27.61 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -41.41 -8.08 -49.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071656335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.014 kcal (2) G-P(sol) polarization free energy of solvation -41.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds