Wall clock time and date at job start Tue Mar 31 2020 07:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 110.88344 * 2 1 4 4 C 1.54904 * 111.00895 * 123.92226 * 2 1 3 5 5 N 1.47421 * 104.83693 * 155.08473 * 4 2 1 6 6 C 1.34770 * 125.65231 * 155.91314 * 5 4 2 7 7 O 1.21284 * 119.99812 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00364 * 180.02562 * 6 5 4 9 9 S 1.81003 * 109.47089 * 180.02562 * 8 6 5 10 10 C 1.76203 * 99.99697 * 180.02562 * 9 8 6 11 11 H 1.07998 * 119.99799 * 359.97438 * 10 9 8 12 12 C 1.38795 * 119.99695 * 179.97438 * 10 9 8 13 13 N 1.31632 * 120.00364 * 359.97438 * 12 10 9 14 14 Si 1.86808 * 119.99738 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46885 * 90.00083 * 14 12 10 16 16 H 1.48496 * 109.47035 * 209.99852 * 14 12 10 17 17 H 1.48491 * 109.47127 * 330.00004 * 14 12 10 18 18 C 1.47022 * 108.70016 * 335.87530 * 5 4 2 19 19 C 1.54321 * 107.27305 * 1.05875 * 18 5 4 20 20 H 1.09004 * 110.87481 * 140.62812 * 19 18 5 21 21 N 1.46507 * 110.71866 * 263.82840 * 19 18 5 22 22 C 1.34778 * 120.00131 * 268.52255 * 21 19 18 23 23 O 1.21278 * 119.99828 * 359.97438 * 22 21 19 24 24 C 1.50700 * 119.99741 * 179.97438 * 22 21 19 25 25 C 1.50697 * 109.46617 * 179.97438 * 24 22 21 26 26 N 1.34784 * 119.99774 * 180.02562 * 25 24 22 27 27 O 1.21283 * 120.00521 * 359.73030 * 25 24 22 28 28 H 1.09003 * 109.46260 * 183.87690 * 1 2 3 29 29 H 1.08995 * 109.46851 * 303.87924 * 1 2 3 30 30 H 1.09004 * 109.47211 * 63.88360 * 1 2 3 31 31 H 1.09001 * 110.36672 * 273.92546 * 4 2 1 32 32 H 1.08997 * 110.36715 * 36.13615 * 4 2 1 33 33 H 1.09000 * 109.46953 * 300.00355 * 8 6 5 34 34 H 1.09003 * 109.46619 * 60.00629 * 8 6 5 35 35 H 0.96997 * 119.99760 * 180.02562 * 13 12 10 36 36 H 1.08992 * 109.88179 * 241.63783 * 18 5 4 37 37 H 1.09008 * 109.88145 * 120.47448 * 18 5 4 38 38 H 0.97004 * 119.99551 * 88.52077 * 21 19 18 39 39 H 1.09001 * 109.46798 * 60.00692 * 24 22 21 40 40 H 1.08993 * 109.47546 * 300.00244 * 24 22 21 41 41 H 0.96999 * 120.00044 * 179.72920 * 26 25 24 42 42 H 0.97005 * 119.99846 * 359.72750 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0854 -0.8070 1.1999 5 7 3.4272 -1.2432 0.7728 6 6 4.4477 -1.5621 1.5933 7 8 4.3007 -1.5018 2.7957 8 6 5.7716 -1.9936 1.0169 9 16 6.9279 -2.3512 2.3627 10 6 8.3485 -2.8167 1.4300 11 1 8.3099 -2.8157 0.3507 12 6 9.5170 -3.1847 2.0824 13 7 9.5641 -3.1854 3.3978 14 14 11.0228 -3.6789 1.0935 15 1 11.8497 -2.4769 0.8169 16 1 11.8223 -4.6623 1.8673 17 1 10.5934 -4.2904 -0.1898 18 6 3.4675 -1.2737 -0.6965 19 6 2.0862 -0.8073 -1.2026 20 1 2.1893 -0.1697 -2.0806 21 7 1.2269 -1.9568 -1.4970 22 6 1.2063 -2.4824 -2.7379 23 8 1.8987 -2.0035 -3.6109 24 6 0.3227 -3.6652 -3.0406 25 6 0.4836 -4.0549 -4.4873 26 7 -0.2148 -5.0939 -4.9870 27 8 1.2373 -3.4305 -5.2035 28 1 -0.3632 -1.0254 0.0695 29 1 -0.3633 0.5728 0.8532 30 1 -0.3634 0.4524 -0.9228 31 1 2.1561 -0.1727 2.0835 32 1 1.4510 -1.6698 1.4030 33 1 5.6299 -2.8895 0.4123 34 1 6.1743 -1.1949 0.3940 35 1 10.3809 -3.4422 3.8537 36 1 3.6652 -2.2887 -1.0409 37 1 4.2427 -0.5991 -1.0602 38 1 0.6729 -2.3396 -0.7988 39 1 -0.7171 -3.4001 -2.8495 40 1 0.6069 -4.5032 -2.4043 41 1 -0.1143 -5.3423 -5.9192 42 1 -0.8179 -5.5931 -4.4143 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071656337.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:51 Heat of formation + Delta-G solvation = -104.263880 kcal Electronic energy + Delta-G solvation = -25578.674256 eV Core-core repulsion = 21685.077688 eV Total energy + Delta-G solvation = -3893.596568 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 2.63 seconds Orbital eigenvalues (eV) -40.87177 -39.91603 -38.69586 -37.42162 -34.28985 -33.92308 -32.72885 -32.41259 -30.95855 -29.47830 -28.67256 -26.20237 -25.39936 -23.43152 -22.16096 -20.63619 -20.27890 -19.33332 -18.09756 -17.72721 -17.56059 -16.70665 -16.54981 -16.28323 -16.17255 -15.40021 -15.17846 -14.78563 -14.52716 -14.35405 -14.02455 -13.85126 -13.76431 -13.70223 -13.17857 -12.94473 -12.70286 -12.49408 -12.39958 -12.28347 -11.92673 -11.63510 -11.30872 -11.06178 -11.03456 -10.98719 -10.73946 -10.53103 -10.02510 -9.80423 -9.76831 -9.55190 -9.29261 -9.04906 -8.53600 -8.22920 -6.49209 -6.20210 -3.90873 2.24983 2.44524 2.55236 2.89964 3.04622 3.24444 3.27654 3.30282 3.32718 3.61891 4.00279 4.17175 4.22348 4.30500 4.51853 4.54029 4.71156 4.81805 4.92465 5.00774 5.04540 5.14828 5.17172 5.31740 5.36271 5.53594 5.59596 5.64270 5.69408 5.76786 5.83740 5.93794 6.16707 6.18706 6.38084 6.40506 6.90048 7.15685 7.61275 7.63249 7.88456 8.03626 8.37351 8.53585 9.25363 10.87247 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.011923 B = 0.002835 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.874442 B = 9873.058480 C =11684.908592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.101 0.899 4 C 0.110 3.890 5 N -0.626 5.626 6 C 0.550 3.450 7 O -0.516 6.516 8 C -0.147 4.147 9 S -0.061 6.061 10 C -0.534 4.534 11 H 0.073 0.927 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.091 3.909 19 C 0.140 3.860 20 H 0.112 0.888 21 N -0.723 5.723 22 C 0.513 3.487 23 O -0.491 6.491 24 C -0.168 4.168 25 C 0.515 3.485 26 N -0.861 5.861 27 O -0.496 6.496 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.268 0.732 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.400 0.600 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.403 0.597 42 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.786 0.042 -12.341 29.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.119 0.881 4 C -0.013 4.013 5 N -0.364 5.364 6 C 0.339 3.661 7 O -0.390 6.390 8 C -0.298 4.298 9 S 0.166 5.834 10 C -0.682 4.682 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.504 5.504 14 Si 0.745 3.255 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.197 1.197 18 C -0.033 4.033 19 C 0.034 3.966 20 H 0.130 0.870 21 N -0.378 5.378 22 C 0.297 3.703 23 O -0.362 6.362 24 C -0.211 4.211 25 C 0.297 3.703 26 N -0.427 5.427 27 O -0.367 6.367 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.235 0.765 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.234 0.766 42 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -25.729 0.966 -11.317 28.125 hybrid contribution 0.569 -1.126 -1.702 2.118 sum -25.160 -0.160 -13.019 28.329 Atomic orbital electron populations 1.21634 0.93271 1.02030 1.02582 1.22712 0.96754 1.00029 0.93773 0.88105 1.22228 0.83646 0.97931 0.97485 1.48494 1.12124 1.69312 1.06427 1.20025 0.84041 0.76044 0.86028 1.90709 1.82333 1.51645 1.14274 1.23516 0.96250 1.03930 1.06081 1.85350 1.05087 1.87339 1.05665 1.22864 0.97979 1.52568 0.94824 0.90912 1.24989 0.98478 0.94938 0.95149 1.70019 1.28093 1.45181 1.07075 0.86166 0.81294 0.78452 0.79605 1.20237 1.20754 1.19653 1.22473 0.97664 1.02553 0.80625 1.21931 0.88698 0.87279 0.98672 0.86972 1.45979 1.46429 1.33656 1.11688 1.19946 0.83371 0.84562 0.82454 1.90894 1.40509 1.59828 1.44988 1.21595 1.03022 0.99848 0.96653 1.19974 0.80514 0.80465 0.89379 1.43864 1.48152 1.34870 1.15790 1.90935 1.35077 1.50920 1.59773 0.92489 0.91739 0.91835 0.90017 0.91818 0.89378 0.89239 0.92200 0.90826 0.90212 0.76477 0.85980 0.85839 0.76582 0.77281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 8.85 37.16 0.33 -0.35 16 2 C -0.11 -0.83 3.51 -88.47 -0.31 -1.14 16 3 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 4 C 0.11 1.16 6.33 -2.53 -0.02 1.14 16 5 N -0.63 -8.81 3.33 -170.53 -0.57 -9.38 16 6 C 0.55 10.65 7.87 -10.99 -0.09 10.57 16 7 O -0.52 -11.88 16.12 5.55 0.09 -11.79 16 8 C -0.15 -3.11 5.35 36.01 0.19 -2.92 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.53 -15.51 9.50 30.94 0.29 -15.22 16 11 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 12 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 13 N -0.87 -26.46 13.22 55.49 0.73 -25.72 16 14 Si 0.92 21.81 29.55 -169.99 -5.02 16.78 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 C 0.09 1.08 6.23 -3.07 -0.02 1.06 16 19 C 0.14 1.23 3.10 -66.09 -0.20 1.02 16 20 H 0.11 1.07 7.55 -51.93 -0.39 0.68 16 21 N -0.72 -5.19 4.45 -52.03 -0.23 -5.42 16 22 C 0.51 4.85 7.82 -10.99 -0.09 4.76 16 23 O -0.49 -7.34 13.82 -18.96 -0.26 -7.60 16 24 C -0.17 -0.87 6.19 -29.04 -0.18 -1.05 16 25 C 0.51 4.41 8.09 -10.98 -0.09 4.32 16 26 N -0.86 -3.55 8.87 31.22 0.28 -3.28 16 27 O -0.50 -7.35 15.02 -18.96 -0.28 -7.63 16 28 H 0.06 0.21 6.48 -51.93 -0.34 -0.12 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.96 8.04 -51.93 -0.42 0.55 16 32 H 0.06 0.59 7.98 -51.93 -0.41 0.18 16 33 H 0.09 1.77 8.14 -51.92 -0.42 1.34 16 34 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 35 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.07 0.94 8.04 -51.93 -0.42 0.52 16 37 H 0.08 0.95 8.14 -51.92 -0.42 0.52 16 38 H 0.40 1.84 7.11 -40.82 -0.29 1.55 16 39 H 0.12 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.12 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.40 1.58 8.93 -40.82 -0.36 1.22 16 42 H 0.40 0.21 8.83 -40.82 -0.36 -0.15 16 LS Contribution 368.82 15.07 5.56 5.56 Total: -1.00 -41.87 368.82 -8.11 -49.99 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -5.92 Total: -1.84 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -0.27 Total: 4.23 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.21 Total: -43.80 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.46 Total: -27.02 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -41.87 -8.11 -49.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071656337.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.276 kcal (2) G-P(sol) polarization free energy of solvation -41.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds