Wall clock time and date at job start Tue Mar 31 2020 07:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 110.63994 * 2 1 4 4 C 1.54320 * 110.87351 * 236.74811 * 2 1 3 5 5 N 1.47023 * 107.27059 * 219.37422 * 4 2 1 6 6 C 1.34777 * 125.64619 * 178.99216 * 5 4 2 7 7 O 1.21280 * 120.00183 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99879 * 180.02562 * 6 5 4 9 9 S 1.81003 * 109.47331 * 179.97438 * 8 6 5 10 10 C 1.76198 * 100.00312 * 179.97438 * 9 8 6 11 11 H 1.07998 * 119.99431 * 0.02562 * 10 9 8 12 12 C 1.38795 * 119.99935 * 179.97438 * 10 9 8 13 13 N 1.31630 * 119.99547 * 179.97438 * 12 10 9 14 14 Si 1.86792 * 120.00209 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47501 * 89.99652 * 14 12 10 16 16 H 1.48499 * 109.47142 * 209.99733 * 14 12 10 17 17 H 1.48504 * 109.47344 * 329.99803 * 14 12 10 18 18 C 1.47423 * 108.70369 * 358.94261 * 5 4 2 19 19 C 1.54909 * 104.83342 * 24.12712 * 18 5 4 20 20 H 1.09003 * 111.03280 * 81.07712 * 19 18 5 21 21 N 1.46497 * 111.00676 * 204.91890 * 19 18 5 22 22 C 1.34780 * 119.99566 * 267.20003 * 21 19 18 23 23 O 1.21280 * 120.00423 * 359.97438 * 22 21 19 24 24 C 1.50701 * 119.99795 * 180.02562 * 22 21 19 25 25 C 1.50703 * 109.47064 * 179.97438 * 24 22 21 26 26 N 1.34777 * 120.00161 * 180.02562 * 25 24 22 27 27 O 1.21278 * 119.99985 * 359.97438 * 25 24 22 28 28 H 1.09004 * 109.47760 * 296.86026 * 1 2 3 29 29 H 1.09007 * 109.47099 * 56.86211 * 1 2 3 30 30 H 1.09004 * 109.47460 * 176.85738 * 1 2 3 31 31 H 1.08999 * 109.88378 * 338.79376 * 4 2 1 32 32 H 1.08997 * 109.87867 * 99.95665 * 4 2 1 33 33 H 1.09004 * 109.47051 * 299.99698 * 8 6 5 34 34 H 1.09001 * 109.47436 * 59.99280 * 8 6 5 35 35 H 0.97005 * 119.99669 * 180.02562 * 13 12 10 36 36 H 1.08999 * 110.36333 * 265.28907 * 18 5 4 37 37 H 1.08993 * 110.36509 * 142.97167 * 18 5 4 38 38 H 0.96995 * 120.00423 * 87.19308 * 21 19 18 39 39 H 1.09002 * 109.47060 * 299.99722 * 24 22 21 40 40 H 1.09001 * 109.47380 * 59.99809 * 24 22 21 41 41 H 0.97005 * 119.99463 * 359.97438 * 26 25 24 42 42 H 0.96993 * 120.00115 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0799 -0.7906 -1.2058 5 7 3.2494 -1.5470 -0.7352 6 6 4.0006 -2.3784 -1.4843 7 8 3.7300 -2.5524 -2.6536 8 6 5.1761 -3.0925 -0.8686 9 16 5.9761 -4.1275 -2.1195 10 6 7.2763 -4.8233 -1.1552 11 1 7.3765 -4.5589 -0.1129 12 6 8.1711 -5.7120 -1.7349 13 7 9.1427 -6.2313 -1.0146 14 14 7.9973 -6.1699 -3.5375 15 1 8.7846 -5.2226 -4.3671 16 1 8.5024 -7.5503 -3.7485 17 1 6.5668 -6.1007 -3.9302 18 6 3.4651 -1.2447 0.6915 19 6 2.0789 -0.7933 1.2152 20 1 1.4465 -1.6525 1.4388 21 7 2.2173 0.0728 2.3886 22 6 2.1825 -0.4590 3.6265 23 8 2.0361 -1.6544 3.7692 24 6 2.3243 0.4321 4.8336 25 6 2.2514 -0.4031 6.0859 26 7 2.3548 0.1841 7.2946 27 8 2.0988 -1.6036 6.0061 28 1 -0.3635 0.4643 0.9168 29 1 -0.3634 0.5618 -0.8606 30 1 -0.3634 -1.0261 -0.0563 31 1 1.3191 -1.4773 -1.5769 32 1 2.3775 -0.1016 -1.9962 33 1 5.8900 -2.3597 -0.4922 34 1 4.8307 -3.7188 -0.0460 35 1 9.7683 -6.8522 -1.4198 36 1 4.1929 -0.4409 0.8031 37 1 3.7992 -2.1363 1.2219 38 1 2.3342 1.0289 2.2746 39 1 3.2847 0.9463 4.7948 40 1 1.5190 1.1666 4.8397 41 1 2.4765 1.1444 7.3584 42 1 2.3074 -0.3534 8.1006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071656340.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:12 Heat of formation + Delta-G solvation = -106.323272 kcal Electronic energy + Delta-G solvation = -25435.520132 eV Core-core repulsion = 21541.834261 eV Total energy + Delta-G solvation = -3893.685870 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.79698 -39.95192 -38.75941 -37.47475 -34.45209 -33.95921 -32.93155 -32.40154 -31.02755 -29.57971 -28.48299 -26.20835 -25.52773 -23.57498 -21.73597 -21.07745 -20.31863 -19.48951 -17.97194 -17.78634 -17.60065 -16.87947 -16.66337 -16.24190 -16.17674 -15.33689 -15.21109 -14.91166 -14.50755 -14.36070 -13.96124 -13.87595 -13.69385 -13.68401 -13.42822 -13.15100 -12.76957 -12.54651 -12.53546 -12.33027 -11.92747 -11.62145 -11.50558 -11.22379 -11.01633 -10.97253 -10.57813 -10.54063 -10.02906 -9.83446 -9.79639 -9.61789 -9.35610 -8.96905 -8.60458 -8.46737 -6.88668 -6.25133 -3.96907 2.23040 2.40482 2.43928 2.74449 2.94934 3.17667 3.32516 3.35974 3.53657 3.63525 3.97300 4.17411 4.27989 4.36506 4.46940 4.51536 4.68409 4.70925 4.77888 4.88643 5.01972 5.04284 5.13783 5.17736 5.38356 5.43954 5.53662 5.61337 5.68804 5.69223 5.82139 5.88467 6.06498 6.10795 6.32053 6.40242 6.89209 7.11226 7.53124 7.87015 7.98079 8.01946 8.42703 8.46270 9.20879 10.84205 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.012842 B = 0.002801 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.809539 B = 9994.364371 C =11897.119047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 H 0.090 0.910 4 C 0.115 3.885 5 N -0.623 5.623 6 C 0.549 3.451 7 O -0.516 6.516 8 C -0.118 4.118 9 S -0.142 6.142 10 C -0.520 4.520 11 H 0.088 0.912 12 C 0.095 3.905 13 N -0.881 5.881 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 C 0.089 3.911 19 C 0.138 3.862 20 H 0.110 0.890 21 N -0.723 5.723 22 C 0.511 3.489 23 O -0.485 6.485 24 C -0.166 4.166 25 C 0.513 3.487 26 N -0.861 5.861 27 O -0.493 6.493 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.271 0.729 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.401 0.599 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.399 0.601 42 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.886 23.645 13.420 32.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.128 4.128 3 H 0.108 0.892 4 C -0.008 4.008 5 N -0.361 5.361 6 C 0.338 3.662 7 O -0.390 6.390 8 C -0.269 4.269 9 S 0.084 5.916 10 C -0.667 4.667 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.517 5.517 14 Si 0.682 3.318 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 C -0.036 4.036 19 C 0.032 3.968 20 H 0.128 0.872 21 N -0.377 5.377 22 C 0.294 3.706 23 O -0.356 6.356 24 C -0.209 4.209 25 C 0.295 3.705 26 N -0.427 5.427 27 O -0.365 6.365 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.235 0.765 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.227 0.773 42 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -18.292 21.484 11.491 30.466 hybrid contribution 0.762 0.865 1.130 1.614 sum -17.530 22.349 12.621 31.081 Atomic orbital electron populations 1.21760 0.93110 1.02833 1.02215 1.22506 0.97033 0.99547 0.93716 0.89157 1.21927 0.88188 0.94749 0.95965 1.48329 1.30692 1.46207 1.10856 1.19992 0.82732 0.77664 0.85837 1.90707 1.70063 1.62280 1.15948 1.23268 0.97458 1.02188 1.03977 1.84744 1.35949 1.54594 1.16287 1.22310 1.13351 1.31414 0.99666 0.89372 1.24711 0.93811 0.94295 0.98509 1.69945 1.15414 1.29746 1.36615 0.86730 0.81601 0.78653 0.84844 1.19225 1.19938 1.15894 1.22682 0.97241 1.02016 0.81647 1.22161 0.96281 0.94319 0.84028 0.87168 1.45791 1.76002 1.10940 1.04965 1.20001 0.77619 0.89116 0.83822 1.90925 1.44776 1.14729 1.85158 1.21583 1.06728 0.99838 0.92794 1.19978 0.77097 0.88599 0.84844 1.43858 1.78296 1.12381 1.08160 1.90953 1.45116 1.14200 1.86198 0.92053 0.91857 0.91912 0.90933 0.91084 0.88607 0.88395 0.91958 0.90973 0.89556 0.76485 0.85810 0.85979 0.77331 0.76538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.17 37.16 0.34 -0.50 16 2 C -0.11 -0.76 3.19 -88.79 -0.28 -1.04 16 3 H 0.09 0.45 8.00 -51.93 -0.42 0.03 16 4 C 0.12 1.25 6.47 -3.07 -0.02 1.24 16 5 N -0.62 -8.83 3.33 -170.53 -0.57 -9.40 16 6 C 0.55 10.49 7.87 -10.99 -0.09 10.41 16 7 O -0.52 -11.63 16.19 5.56 0.09 -11.54 16 8 C -0.12 -2.46 5.16 36.00 0.19 -2.27 16 9 S -0.14 -3.74 18.55 -107.50 -1.99 -5.73 16 10 C -0.52 -15.42 10.04 30.94 0.31 -15.11 16 11 H 0.09 2.74 8.03 -52.49 -0.42 2.31 16 12 C 0.10 2.86 5.50 -17.43 -0.10 2.76 16 13 N -0.88 -27.17 13.97 55.49 0.78 -26.40 16 14 Si 0.86 22.27 27.74 -169.99 -4.71 17.55 16 15 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 16 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.23 -6.10 6.74 56.52 0.38 -5.72 16 18 C 0.09 1.02 6.39 -2.53 -0.02 1.00 16 19 C 0.14 1.23 2.87 -65.78 -0.19 1.04 16 20 H 0.11 1.25 7.45 -51.93 -0.39 0.86 16 21 N -0.72 -4.54 5.20 -51.73 -0.27 -4.81 16 22 C 0.51 4.65 7.82 -10.98 -0.09 4.56 16 23 O -0.49 -7.45 13.82 -18.96 -0.26 -7.71 16 24 C -0.17 -0.75 6.19 -29.03 -0.18 -0.93 16 25 C 0.51 4.28 8.09 -10.98 -0.09 4.19 16 26 N -0.86 -3.32 8.87 31.22 0.28 -3.04 16 27 O -0.49 -7.40 15.02 -18.96 -0.28 -7.68 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 30 H 0.06 0.44 8.07 -51.93 -0.42 0.03 16 31 H 0.07 0.84 7.78 -51.93 -0.40 0.44 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 1.86 8.14 -51.91 -0.42 1.43 16 34 H 0.10 1.97 7.85 -51.91 -0.41 1.56 16 35 H 0.27 7.74 8.31 -40.82 -0.34 7.40 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.09 1.15 7.48 -51.93 -0.39 0.76 16 38 H 0.40 1.02 8.57 -40.82 -0.35 0.67 16 39 H 0.12 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.12 0.10 8.14 -51.93 -0.42 -0.32 16 41 H 0.40 0.03 8.83 -40.82 -0.36 -0.33 16 42 H 0.40 1.54 8.93 -40.82 -0.36 1.17 16 LS Contribution 368.66 15.07 5.56 5.56 Total: -1.00 -42.62 368.66 -7.63 -50.25 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -6.03 Total: -2.38 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -0.21 Total: 5.34 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.22 Total: -43.65 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.46 Total: -26.93 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.55 kcal Atomic # 16 Polarization: -3.74 SS G_CDS: -1.99 Total: -5.73 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -42.62 -7.63 -50.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071656340.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.074 kcal (2) G-P(sol) polarization free energy of solvation -42.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds