Wall clock time and date at job start Tue Mar 31 2020 07:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.88615 * 2 1 4 4 C 1.54912 * 111.00645 * 123.92748 * 2 1 3 5 5 N 1.47426 * 104.83401 * 155.08309 * 4 2 1 6 6 C 1.34772 * 125.64619 * 155.84073 * 5 4 2 7 7 O 1.21282 * 120.00180 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99978 * 179.97438 * 6 5 4 9 9 C 1.50694 * 109.47403 * 180.02562 * 8 6 5 10 10 N 1.34778 * 120.00702 * 180.02562 * 9 8 6 11 11 O 1.21287 * 120.00023 * 0.02562 * 9 8 6 12 12 C 1.47482 * 108.75761 * 335.89324 * 5 4 2 13 13 C 1.54322 * 107.03775 * 1.02312 * 12 5 4 14 14 H 1.09005 * 110.71782 * 140.69478 * 13 12 5 15 15 N 1.46499 * 110.72011 * 263.78901 * 13 12 5 16 16 C 1.34778 * 120.00278 * 271.15446 * 15 13 12 17 17 O 1.21278 * 119.99748 * 0.02562 * 16 15 13 18 18 C 1.50697 * 120.00209 * 180.02562 * 16 15 13 19 19 S 1.80999 * 109.47181 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99825 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00405 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99855 * 179.72221 * 20 19 18 23 23 N 1.31634 * 119.99756 * 0.27728 * 22 20 19 24 24 Si 1.86803 * 120.00005 * 180.27923 * 22 20 19 25 25 H 1.48496 * 109.47187 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 119.99999 * 24 22 20 27 27 H 1.48498 * 109.47018 * 240.00046 * 24 22 20 28 28 H 1.09004 * 109.46913 * 183.87580 * 1 2 3 29 29 H 1.08995 * 109.47253 * 303.87559 * 1 2 3 30 30 H 1.08994 * 109.46855 * 63.87950 * 1 2 3 31 31 H 1.09001 * 110.36173 * 273.92203 * 4 2 1 32 32 H 1.08999 * 110.36486 * 36.12999 * 4 2 1 33 33 H 1.09002 * 109.47315 * 300.00440 * 8 6 5 34 34 H 1.09003 * 109.46853 * 60.00652 * 8 6 5 35 35 H 0.97005 * 119.99213 * 359.97438 * 10 9 8 36 36 H 0.96991 * 120.00857 * 180.02562 * 10 9 8 37 37 H 1.09008 * 110.03302 * 241.66070 * 12 5 4 38 38 H 1.09002 * 109.96713 * 120.35173 * 12 5 4 39 39 H 0.97000 * 119.99972 * 91.15802 * 15 13 12 40 40 H 1.08999 * 109.47278 * 59.99800 * 18 16 15 41 41 H 1.09002 * 109.46837 * 300.00183 * 18 16 15 42 42 H 0.97000 * 119.99219 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0853 -0.8072 1.1999 5 7 3.4272 -1.2434 0.7728 6 6 4.4481 -1.5611 1.5933 7 8 4.3014 -1.4995 2.7957 8 6 5.7715 -1.9939 1.0169 9 6 6.7348 -2.2898 2.1373 10 7 7.9892 -2.6962 1.8580 11 8 6.3814 -2.1623 3.2905 12 6 3.4691 -1.2739 -0.7011 13 6 2.0862 -0.8074 -1.2026 14 1 2.1893 -0.1698 -2.0806 15 7 1.2269 -1.9568 -1.4970 16 6 1.2428 -2.5132 -2.7245 17 8 1.9688 -2.0626 -3.5852 18 6 0.3584 -3.6952 -3.0276 19 16 0.6063 -4.2095 -4.7452 20 6 -0.5153 -5.5661 -4.8232 21 1 -1.0944 -5.8388 -3.9533 22 6 -0.6592 -6.2805 -6.0045 23 7 0.0462 -5.9479 -7.0649 24 14 -1.8541 -7.7139 -6.0895 25 1 -2.5196 -7.8824 -4.7728 26 1 -2.8775 -7.4441 -7.1311 27 1 -1.1145 -8.9552 -6.4321 28 1 -0.3633 -1.0254 0.0695 29 1 -0.3633 0.5728 0.8532 30 1 -0.3633 0.4524 -0.9227 31 1 2.1560 -0.1728 2.0835 32 1 1.4508 -1.6699 1.4030 33 1 5.6293 -2.8908 0.4139 34 1 6.1740 -1.1962 0.3924 35 1 8.2717 -2.7985 0.9357 36 1 8.6091 -2.8870 2.5791 37 1 3.6665 -2.2882 -1.0482 38 1 4.2429 -0.5981 -1.0656 39 1 0.6465 -2.3175 -0.8086 40 1 -0.6847 -3.4163 -2.8784 41 1 0.6129 -4.5196 -2.3615 42 1 -0.0541 -6.4474 -7.8903 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071840696.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:23 Heat of formation + Delta-G solvation = -105.587967 kcal Electronic energy + Delta-G solvation = -25506.181606 eV Core-core repulsion = 21612.527621 eV Total energy + Delta-G solvation = -3893.653985 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.85065 -39.87487 -38.72968 -37.46445 -34.23483 -33.86619 -32.68824 -32.47439 -30.64407 -30.09911 -28.15348 -26.63687 -25.53313 -23.45608 -21.62287 -20.98613 -20.18309 -19.42692 -18.02435 -17.71722 -17.55012 -16.89836 -16.43891 -16.16632 -16.01846 -15.49760 -15.08944 -14.84919 -14.83277 -14.37840 -14.07806 -13.87590 -13.72670 -13.42110 -13.22377 -12.92919 -12.72291 -12.61330 -12.46955 -12.29734 -12.03176 -11.67847 -11.30361 -11.10823 -11.07273 -11.02703 -10.79111 -10.46635 -9.96132 -9.85820 -9.71104 -9.53910 -9.15133 -9.09609 -8.85571 -8.30268 -6.56006 -6.27049 -3.97770 2.32091 2.49475 2.50592 2.92187 2.93873 3.18227 3.24451 3.28574 3.31514 3.61304 3.89647 4.15541 4.23105 4.28723 4.50551 4.61312 4.78799 4.87342 4.91663 5.01005 5.07077 5.08696 5.10234 5.27598 5.39836 5.44061 5.48671 5.58547 5.70348 5.76626 5.81470 5.90832 5.99192 6.07157 6.46927 6.48630 6.96900 7.21603 7.54550 7.56324 7.91442 8.07568 8.30525 8.46957 9.18951 10.80385 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014617 B = 0.002516 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.093142 B =11125.753976 C =12172.992697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.099 0.901 4 C 0.111 3.889 5 N -0.622 5.622 6 C 0.530 3.470 7 O -0.498 6.498 8 C -0.165 4.165 9 C 0.516 3.484 10 N -0.860 5.860 11 O -0.500 6.500 12 C 0.085 3.915 13 C 0.140 3.860 14 H 0.112 0.888 15 N -0.729 5.729 16 C 0.535 3.465 17 O -0.515 6.515 18 C -0.155 4.155 19 S -0.059 6.059 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.401 0.599 36 H 0.403 0.597 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.399 0.601 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.347 11.277 14.760 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 H 0.117 0.883 4 C -0.012 4.012 5 N -0.359 5.359 6 C 0.316 3.684 7 O -0.371 6.371 8 C -0.208 4.208 9 C 0.299 3.701 10 N -0.425 5.425 11 O -0.372 6.372 12 C -0.039 4.039 13 C 0.034 3.966 14 H 0.130 0.870 15 N -0.384 5.384 16 C 0.321 3.679 17 O -0.389 6.389 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.206 1.206 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.229 0.771 36 H 0.234 0.766 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.235 0.765 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.171 12.137 14.563 21.514 hybrid contribution -1.367 -1.864 0.790 2.442 sum 8.804 10.273 15.353 20.464 Atomic orbital electron populations 1.21656 0.92910 1.02508 1.02778 1.22685 0.97194 0.99635 0.93557 0.88316 1.22298 0.82856 0.98357 0.97649 1.48596 1.12278 1.68124 1.06898 1.19570 0.84247 0.78208 0.86341 1.90869 1.81907 1.50622 1.13661 1.21583 0.94194 1.05693 0.99280 1.19987 0.82689 0.77239 0.90210 1.43853 1.13923 1.72445 1.12328 1.90911 1.76086 1.49119 1.21053 1.22744 0.98890 1.02773 0.79468 1.21825 0.88358 0.88040 0.98388 0.87016 1.46075 1.45222 1.33260 1.13882 1.20345 0.82553 0.83813 0.81142 1.90704 1.40333 1.62149 1.45716 1.23539 1.01434 0.97800 1.07743 1.85366 1.56817 1.39237 1.01844 1.22901 1.27617 1.17192 1.00630 0.90874 1.24995 0.96253 0.97663 0.94668 1.70024 1.38921 1.39584 1.01746 0.86116 0.80124 0.80975 0.78293 1.19608 1.20542 1.20559 0.92130 0.91886 0.91391 0.90058 0.91295 0.85835 0.85965 0.77120 0.76628 0.90262 0.90239 0.76518 0.89151 0.89234 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 8.85 37.16 0.33 -0.59 16 2 C -0.11 -0.79 3.51 -88.47 -0.31 -1.10 16 3 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.11 0.97 6.35 -2.53 -0.02 0.95 16 5 N -0.62 -6.02 3.34 -170.15 -0.57 -6.59 16 6 C 0.53 6.23 7.84 -10.99 -0.09 6.14 16 7 O -0.50 -8.24 14.43 -18.96 -0.27 -8.52 16 8 C -0.16 -1.28 5.38 -29.04 -0.16 -1.43 16 9 C 0.52 5.18 8.09 -10.99 -0.09 5.09 16 10 N -0.86 -4.71 8.87 31.22 0.28 -4.43 16 11 O -0.50 -7.88 15.02 -18.97 -0.28 -8.17 16 12 C 0.09 0.74 6.26 -2.81 -0.02 0.72 16 13 C 0.14 1.29 3.04 -66.10 -0.20 1.09 16 14 H 0.11 1.14 7.62 -51.93 -0.40 0.75 16 15 N -0.73 -8.07 4.51 -52.03 -0.23 -8.30 16 16 C 0.53 8.69 7.85 -10.99 -0.09 8.61 16 17 O -0.52 -10.23 15.55 5.56 0.09 -10.14 16 18 C -0.15 -2.87 6.16 36.00 0.22 -2.65 16 19 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 20 C -0.54 -14.75 9.50 30.94 0.29 -14.46 16 21 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 22 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 23 N -0.87 -25.47 13.22 55.49 0.73 -24.74 16 24 Si 0.92 20.92 29.55 -169.99 -5.02 15.90 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H 0.06 0.39 6.43 -51.93 -0.33 0.06 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.76 8.04 -51.93 -0.42 0.35 16 32 H 0.07 0.60 7.98 -51.93 -0.41 0.19 16 33 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.12 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.40 0.90 8.83 -40.82 -0.36 0.54 16 36 H 0.40 1.96 8.93 -40.82 -0.36 1.60 16 37 H 0.08 0.78 8.04 -51.92 -0.42 0.36 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.40 3.65 7.01 -40.82 -0.29 3.36 16 40 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 41 H 0.09 1.55 8.14 -51.91 -0.42 1.13 16 42 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 368.84 15.07 5.56 5.56 Total: -1.00 -39.46 368.84 -8.07 -47.53 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -5.92 Total: 1.32 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -0.21 Total: 4.32 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.21 Total: -44.07 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.47 Total: -26.83 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -39.46 -8.07 -47.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071840696.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.054 kcal (2) G-P(sol) polarization free energy of solvation -39.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds