Wall clock time and date at job start Tue Mar 31 2020 07:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.91452 * 2 1 4 4 C 1.54905 * 111.00859 * 123.90596 * 2 1 3 5 5 N 1.47419 * 104.92834 * 155.14142 * 4 2 1 6 6 C 1.34781 * 125.65221 * 155.83963 * 5 4 2 7 7 O 1.21288 * 119.99531 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00374 * 179.97438 * 6 5 4 9 9 C 1.50702 * 109.46766 * 180.02562 * 8 6 5 10 10 N 1.34776 * 119.99326 * 180.02562 * 9 8 6 11 11 O 1.21279 * 120.00289 * 359.97438 * 9 8 6 12 12 C 1.47026 * 108.70576 * 335.81449 * 5 4 2 13 13 C 1.54321 * 107.26791 * 1.06162 * 12 5 4 14 14 H 1.08997 * 110.72400 * 263.82847 * 13 12 5 15 15 N 1.46506 * 110.72083 * 140.73217 * 13 12 5 16 16 C 1.34775 * 119.99699 * 86.45469 * 15 13 12 17 17 O 1.21275 * 120.00281 * 359.97438 * 16 15 13 18 18 C 1.50698 * 119.99644 * 180.02562 * 16 15 13 19 19 S 1.80999 * 109.47178 * 179.97438 * 18 16 15 20 20 C 1.76199 * 100.00457 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99734 * 0.02562 * 20 19 18 22 22 C 1.38794 * 120.00465 * 180.02562 * 20 19 18 23 23 N 1.31630 * 120.00032 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99789 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46816 * 90.00163 * 24 22 20 26 26 H 1.48500 * 109.47193 * 210.00091 * 24 22 20 27 27 H 1.48496 * 109.47055 * 330.00308 * 24 22 20 28 28 H 1.09000 * 109.47194 * 297.54464 * 1 2 3 29 29 H 1.09001 * 109.47578 * 57.54908 * 1 2 3 30 30 H 1.09003 * 109.46933 * 177.54637 * 1 2 3 31 31 H 1.09002 * 110.36692 * 36.24515 * 4 2 1 32 32 H 1.08995 * 110.36664 * 274.03317 * 4 2 1 33 33 H 1.09001 * 109.46862 * 300.00148 * 8 6 5 34 34 H 1.08995 * 109.46650 * 60.00126 * 8 6 5 35 35 H 0.97001 * 120.00507 * 359.97438 * 10 9 8 36 36 H 0.96998 * 119.99594 * 180.02562 * 10 9 8 37 37 H 1.08998 * 109.88266 * 120.47537 * 12 5 4 38 38 H 1.09000 * 109.88221 * 241.64354 * 12 5 4 39 39 H 0.96998 * 119.99780 * 266.45648 * 15 13 12 40 40 H 1.08999 * 109.47627 * 299.99817 * 18 16 15 41 41 H 1.09003 * 109.47208 * 60.00186 * 18 16 15 42 42 H 0.97005 * 119.99749 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8067 1.2002 5 7 3.4280 -1.2429 0.7758 6 6 4.4476 -1.5599 1.5984 7 8 4.2989 -1.4966 2.8005 8 6 5.7721 -1.9928 1.0247 9 6 6.7334 -2.2878 2.1473 10 7 7.9883 -2.6941 1.8704 11 8 6.3780 -2.1587 3.2996 12 6 3.4707 -1.2757 -0.6935 13 6 2.0901 -0.8106 -1.2023 14 1 1.4514 -1.6663 -1.4211 15 7 2.2338 0.0422 -2.3849 16 6 2.3077 -0.5127 -3.6109 17 8 2.2558 -1.7179 -3.7352 18 6 2.4562 0.3646 -4.8272 19 16 2.5275 -0.6689 -6.3114 20 6 2.6958 0.5780 -7.5449 21 1 2.7262 1.6192 -7.2595 22 6 2.7894 0.2222 -8.8832 23 7 2.9157 1.1538 -9.8045 24 14 2.7376 -1.5787 -9.3767 25 1 1.3305 -1.9837 -9.6241 26 1 3.5344 -1.7759 -10.6142 27 1 3.3066 -2.4079 -8.2841 28 1 -0.3633 0.4752 0.9112 29 1 -0.3634 0.5514 -0.8672 30 1 -0.3633 -1.0268 -0.0440 31 1 1.4520 -1.6705 1.4023 32 1 2.1542 -0.1726 2.0841 33 1 5.6312 -2.8902 0.4222 34 1 6.1756 -1.1956 0.4004 35 1 8.2726 -2.7970 0.9487 36 1 8.6069 -2.8844 2.5929 37 1 4.2461 -0.6013 -1.0569 38 1 3.6693 -2.2912 -1.0360 39 1 2.2757 1.0062 -2.2854 40 1 1.6030 1.0396 -4.8947 41 1 3.3743 0.9464 -4.7457 42 1 2.9808 0.9051 -10.7399 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071840697.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:36 Heat of formation + Delta-G solvation = -108.458115 kcal Electronic energy + Delta-G solvation = -25330.993271 eV Core-core repulsion = 21437.214827 eV Total energy + Delta-G solvation = -3893.778444 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 4.24 seconds Orbital eigenvalues (eV) -40.85073 -39.88336 -38.88387 -37.53108 -34.34667 -33.94612 -33.01083 -32.50059 -30.69456 -30.18949 -28.06865 -26.68276 -25.67793 -23.47128 -21.65668 -21.02511 -20.41460 -19.53896 -17.98440 -17.82459 -17.59063 -17.06948 -16.48951 -16.29723 -15.95497 -15.73417 -15.10948 -15.04497 -14.85029 -14.29323 -14.02324 -13.90653 -13.77724 -13.52470 -13.38931 -13.14081 -12.85916 -12.78518 -12.39887 -12.36650 -12.21195 -11.63667 -11.55743 -11.32888 -11.08283 -11.06633 -10.67384 -10.51232 -9.99314 -9.92795 -9.77981 -9.67009 -9.23399 -9.06182 -8.93075 -8.58532 -6.99699 -6.34976 -4.07621 2.27639 2.37606 2.45384 2.67525 2.78522 3.15572 3.27698 3.32198 3.44090 3.55427 3.87373 4.16480 4.23144 4.26814 4.49372 4.56868 4.64676 4.73099 4.80708 4.86065 4.93070 5.02695 5.04139 5.17601 5.26829 5.36497 5.43822 5.50904 5.58810 5.65845 5.73817 5.82535 5.91659 5.96507 6.34802 6.43792 6.93592 7.15470 7.42205 7.86291 7.87916 8.02975 8.31213 8.35546 9.10962 10.74197 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.015331 B = 0.002508 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.969487 B =11163.135033 C =12487.770640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.092 0.908 4 C 0.114 3.886 5 N -0.622 5.622 6 C 0.531 3.469 7 O -0.496 6.496 8 C -0.165 4.165 9 C 0.517 3.483 10 N -0.859 5.859 11 O -0.500 6.500 12 C 0.085 3.915 13 C 0.143 3.857 14 H 0.107 0.893 15 N -0.727 5.727 16 C 0.533 3.467 17 O -0.515 6.515 18 C -0.125 4.125 19 S -0.141 6.141 20 C -0.523 4.523 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.879 5.879 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.401 0.599 36 H 0.403 0.597 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.403 0.597 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.513 -3.301 20.861 21.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.110 0.890 4 C -0.009 4.009 5 N -0.359 5.359 6 C 0.317 3.683 7 O -0.369 6.369 8 C -0.208 4.208 9 C 0.299 3.701 10 N -0.425 5.425 11 O -0.372 6.372 12 C -0.040 4.040 13 C 0.036 3.964 14 H 0.125 0.875 15 N -0.382 5.382 16 C 0.319 3.681 17 O -0.389 6.389 18 C -0.276 4.276 19 S 0.086 5.914 20 C -0.670 4.670 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.229 0.771 36 H 0.234 0.766 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.237 0.763 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.015 -5.115 21.882 22.673 hybrid contribution 0.597 1.148 -0.823 1.534 sum 3.612 -3.967 21.058 21.731 Atomic orbital electron populations 1.21705 0.92761 1.02851 1.02628 1.22712 0.97167 0.99655 0.93484 0.89003 1.22254 0.82643 0.98530 0.97440 1.48418 1.12452 1.68256 1.06755 1.19580 0.84212 0.78187 0.86299 1.90873 1.81811 1.50556 1.13631 1.21588 0.94166 1.05725 0.99304 1.19973 0.82701 0.77237 0.90191 1.43855 1.13891 1.72414 1.12367 1.90909 1.76047 1.49099 1.21132 1.22585 0.99187 1.02658 0.79548 1.21977 0.94995 0.94774 0.84627 0.87506 1.45936 1.76912 1.10157 1.05156 1.20353 0.74984 0.89024 0.83714 1.90710 1.47601 1.14769 1.85839 1.23284 1.05808 1.02263 0.96218 1.84791 1.96517 1.13025 0.97103 1.22302 1.58303 0.94130 0.92277 0.89364 1.24720 0.93172 0.98122 0.95314 1.69937 1.47433 1.33022 1.01183 0.86734 0.79670 0.85243 0.80177 1.19200 1.19935 1.15936 0.91851 0.91545 0.91933 0.90890 0.89871 0.85834 0.85907 0.77087 0.76602 0.90638 0.90279 0.76264 0.88383 0.88368 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.30 37.16 0.35 -0.53 16 2 C -0.11 -0.75 3.27 -88.31 -0.29 -1.04 16 3 H 0.09 0.56 8.02 -51.93 -0.42 0.14 16 4 C 0.11 0.95 6.37 -2.53 -0.02 0.93 16 5 N -0.62 -5.81 3.33 -170.52 -0.57 -6.37 16 6 C 0.53 6.02 7.84 -10.98 -0.09 5.94 16 7 O -0.50 -7.97 14.43 -18.97 -0.27 -8.25 16 8 C -0.17 -1.23 5.38 -29.03 -0.16 -1.39 16 9 C 0.52 5.01 8.09 -10.98 -0.09 4.92 16 10 N -0.86 -4.50 8.87 31.22 0.28 -4.22 16 11 O -0.50 -7.68 15.02 -18.96 -0.28 -7.97 16 12 C 0.08 0.72 6.24 -3.06 -0.02 0.70 16 13 C 0.14 1.26 2.71 -65.94 -0.18 1.08 16 14 H 0.11 1.12 7.57 -51.93 -0.39 0.72 16 15 N -0.73 -7.20 5.13 -51.88 -0.27 -7.47 16 16 C 0.53 7.98 7.84 -10.99 -0.09 7.89 16 17 O -0.52 -9.61 15.59 5.56 0.09 -9.52 16 18 C -0.13 -2.15 6.16 36.00 0.22 -1.93 16 19 S -0.14 -3.33 18.55 -107.50 -1.99 -5.32 16 20 C -0.52 -14.39 10.04 30.94 0.31 -14.08 16 21 H 0.09 2.54 8.03 -52.48 -0.42 2.12 16 22 C 0.10 2.70 5.50 -17.43 -0.10 2.60 16 23 N -0.88 -25.78 13.97 55.49 0.78 -25.01 16 24 Si 0.86 20.97 27.74 -169.99 -4.72 16.25 16 25 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.24 -5.70 6.74 56.52 0.38 -5.32 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.40 8.11 -51.93 -0.42 -0.02 16 31 H 0.07 0.59 8.04 -51.93 -0.42 0.18 16 32 H 0.08 0.74 8.03 -51.93 -0.42 0.33 16 33 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.12 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.40 0.83 8.83 -40.82 -0.36 0.47 16 36 H 0.40 1.86 8.93 -40.82 -0.36 1.50 16 37 H 0.08 0.59 8.03 -51.93 -0.42 0.17 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.40 2.96 8.54 -40.82 -0.35 2.61 16 40 H 0.10 1.57 8.14 -51.92 -0.42 1.15 16 41 H 0.10 1.55 8.14 -51.91 -0.42 1.13 16 42 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 369.75 15.07 5.57 5.57 Total: -1.00 -38.95 369.75 -7.62 -46.57 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.09 Total: 0.64 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -0.14 Total: 5.10 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.22 Total: -43.07 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.47 Total: -25.74 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.72 Total: 16.25 kcal Atomic # 16 Polarization: -3.33 SS G_CDS: -1.99 Total: -5.32 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.95 -7.62 -46.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071840697.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.889 kcal (2) G-P(sol) polarization free energy of solvation -38.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.24 seconds