Wall clock time and date at job start Tue Mar 31 2020 06:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46493 * 109.46027 * 2 1 4 4 C 1.34772 * 120.00461 * 299.97347 * 3 2 1 5 5 O 1.21349 * 119.99841 * 0.02562 * 4 3 2 6 6 C 1.49451 * 120.00162 * 179.97438 * 4 3 2 7 7 N 1.34779 * 119.99971 * 180.02562 * 6 4 3 8 8 O 1.21341 * 120.00193 * 0.02562 * 6 4 3 9 9 C 1.53039 * 109.45951 * 119.97663 * 2 1 3 10 10 C 1.53196 * 109.33748 * 181.36946 * 9 2 1 11 11 N 1.46931 * 108.77131 * 305.41286 * 10 9 2 12 12 C 1.34775 * 120.60689 * 233.57988 * 11 10 9 13 13 O 1.21283 * 120.00376 * 179.97438 * 12 11 10 14 14 C 1.50706 * 119.99836 * 359.97438 * 12 11 10 15 15 S 1.80998 * 109.47083 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99898 * 180.02562 * 15 14 12 17 17 H 1.07999 * 120.00017 * 359.97438 * 16 15 14 18 18 C 1.38799 * 120.00314 * 180.02562 * 16 15 14 19 19 N 1.31628 * 120.00142 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99789 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46679 * 90.00636 * 20 18 16 22 22 H 1.48494 * 109.47294 * 210.00309 * 20 18 16 23 23 H 1.48504 * 109.47082 * 330.00852 * 20 18 16 24 24 C 1.46928 * 118.76737 * 53.55408 * 11 10 9 25 25 C 1.53045 * 109.45848 * 240.04215 * 2 1 3 26 26 H 1.08993 * 109.46896 * 300.02595 * 1 2 3 27 27 H 1.09000 * 109.46705 * 60.02602 * 1 2 3 28 28 H 1.09000 * 109.47060 * 180.02562 * 1 2 3 29 29 H 0.97002 * 120.00131 * 119.97438 * 3 2 1 30 30 H 0.96999 * 120.00135 * 359.97438 * 7 6 4 31 31 H 0.97000 * 120.00008 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.49756 * 301.33670 * 9 2 1 33 33 H 1.09000 * 109.49883 * 61.40413 * 9 2 1 34 34 H 1.08996 * 109.58760 * 65.17188 * 10 9 2 35 35 H 1.09001 * 109.58519 * 185.59185 * 10 9 2 36 36 H 1.09005 * 109.47141 * 300.00250 * 14 12 11 37 37 H 1.09005 * 109.46868 * 60.00194 * 14 12 11 38 38 H 0.97009 * 119.99616 * 179.97438 * 19 18 16 39 39 H 1.08997 * 109.58597 * 186.62384 * 24 11 10 40 40 H 1.09001 * 109.69741 * 66.27202 * 24 11 10 41 41 H 1.08993 * 109.49877 * 298.56751 * 25 2 1 42 42 H 1.09003 * 109.49434 * 58.63248 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3812 0.0000 4 6 1.6928 2.2110 -1.0110 5 8 0.9953 1.8140 -1.9212 6 6 2.1903 3.6202 -1.0107 7 7 1.8646 4.4501 -2.0215 8 8 2.8874 4.0174 -0.1003 9 6 2.0399 -0.7210 1.2499 10 6 3.5715 -0.6895 1.2645 11 7 4.0679 -1.2488 -0.0002 12 6 4.9617 -2.2575 -0.0005 13 8 5.3639 -2.7113 -1.0509 14 6 5.4616 -2.8217 1.3046 15 16 6.6423 -4.1530 0.9736 16 6 7.0515 -4.6163 2.6236 17 1 6.5960 -4.1028 3.4574 18 6 7.9601 -5.6404 2.8519 19 7 8.2661 -5.9861 4.0845 20 14 8.7485 -6.5281 1.4097 21 1 10.0048 -5.8342 1.0283 22 1 9.0548 -7.9284 1.7978 23 1 7.8129 -6.5274 0.2565 24 6 3.5714 -0.6884 -1.2644 25 6 2.0399 -0.7206 -1.2502 26 1 -0.3633 0.5142 0.8897 27 1 -0.3633 0.5134 -0.8902 28 1 -0.3633 -1.0277 0.0005 29 1 2.5754 1.6987 0.7277 30 1 1.3076 4.1326 -2.7494 31 1 2.1878 5.3647 -2.0214 32 1 1.6572 -0.2211 2.1398 33 1 1.6974 -1.7557 1.2383 34 1 3.9148 0.3398 1.3681 35 1 3.9413 -1.2859 2.0986 36 1 5.9530 -2.0344 1.8763 37 1 4.6208 -3.2149 1.8761 38 1 8.9009 -6.7022 4.2440 39 1 3.9417 -1.2842 -2.0987 40 1 3.9143 0.3408 -1.3699 41 1 1.6978 -1.7554 -1.2386 42 1 1.6567 -0.2207 -2.1399 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072887605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:04 Heat of formation + Delta-G solvation = -104.295227 kcal Electronic energy + Delta-G solvation = -26332.556130 eV Core-core repulsion = 22438.958202 eV Total energy + Delta-G solvation = -3893.597928 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.46747 -40.05079 -38.93295 -37.59099 -35.01486 -34.05113 -32.45079 -32.32466 -31.71667 -29.63259 -28.01659 -25.68632 -25.61897 -23.74458 -23.36212 -21.37277 -20.24769 -19.26644 -19.00611 -17.77971 -17.36451 -16.85419 -16.49009 -16.22406 -15.80056 -15.69832 -15.24398 -14.96304 -14.69348 -14.51953 -14.14389 -13.98040 -13.82600 -13.67519 -13.34914 -12.93174 -12.78542 -12.54182 -12.32943 -12.12490 -11.98615 -11.85144 -11.51016 -11.27380 -11.13936 -11.01605 -10.93024 -10.58752 -10.36260 -9.92417 -9.86404 -9.64530 -9.45819 -9.01312 -8.63343 -8.50080 -6.93230 -6.29962 -4.01783 1.00502 2.06664 2.68456 2.80677 2.90652 3.16614 3.32797 3.41501 3.50023 3.57551 4.08821 4.25708 4.32046 4.36071 4.49965 4.61475 4.78464 4.94524 5.02581 5.09210 5.16082 5.22384 5.27730 5.38213 5.49605 5.50742 5.63446 5.68422 5.72332 5.82844 5.86377 5.89455 5.95905 6.01290 6.08263 6.46063 6.52614 6.90888 7.37261 7.42351 7.59630 7.93014 8.40051 8.41340 9.16357 10.79186 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.024958 B = 0.002597 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.627306 B =10779.064762 C =10835.232323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.175 3.825 3 N -0.688 5.688 4 C 0.509 3.491 5 O -0.515 6.515 6 C 0.511 3.489 7 N -0.823 5.823 8 O -0.521 6.521 9 C -0.139 4.139 10 C 0.104 3.896 11 N -0.617 5.617 12 C 0.534 3.466 13 O -0.518 6.518 14 C -0.122 4.122 15 S -0.143 6.143 16 C -0.521 4.521 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.880 5.880 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.117 3.883 25 C -0.145 4.145 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.412 0.588 30 H 0.414 0.586 31 H 0.411 0.589 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.271 0.729 39 H 0.095 0.905 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.368 19.586 -9.122 28.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.090 3.910 3 N -0.342 5.342 4 C 0.289 3.711 5 O -0.391 6.391 6 C 0.290 3.710 7 N -0.389 5.389 8 O -0.396 6.396 9 C -0.178 4.178 10 C -0.020 4.020 11 N -0.353 5.353 12 C 0.322 3.678 13 O -0.392 6.392 14 C -0.272 4.272 15 S 0.084 5.916 16 C -0.668 4.668 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.517 5.517 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.159 1.159 24 C -0.006 4.006 25 C -0.184 4.184 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.249 0.751 30 H 0.245 0.755 31 H 0.243 0.757 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.113 0.887 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.718 18.562 -10.532 27.738 hybrid contribution 0.120 0.558 0.975 1.129 sum -17.598 19.120 -9.557 27.688 Atomic orbital electron populations 1.22217 0.93327 1.03147 1.03427 1.20499 0.94570 0.79489 0.96395 1.46001 1.51961 1.11669 1.24568 1.19991 0.81506 0.86414 0.83172 1.90719 1.36604 1.76541 1.35220 1.20234 0.80787 0.87202 0.82798 1.43536 1.54552 1.15445 1.25391 1.90839 1.36466 1.76991 1.35278 1.22285 0.96091 1.02462 0.96928 1.21748 0.93348 0.99721 0.87178 1.48061 1.44457 1.36241 1.06584 1.20314 0.77871 0.78385 0.91255 1.90692 1.56461 1.58736 1.33319 1.23315 1.03546 1.03046 0.97321 1.84820 1.53179 1.40036 1.13606 1.22300 1.30959 1.23471 0.90087 0.89394 1.24711 0.95065 0.95594 0.95936 1.69939 1.33247 1.29277 1.19214 0.86737 0.81657 0.79634 0.83839 1.19215 1.19950 1.15918 1.21449 0.93038 0.98656 0.87462 1.22373 0.95806 1.01560 0.98627 0.92295 0.90259 0.91160 0.75064 0.75540 0.75677 0.89549 0.88928 0.91435 0.88382 0.88549 0.88480 0.91936 0.88704 0.92288 0.90071 0.88607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 8.40 37.16 0.31 -0.88 16 2 C 0.18 1.38 0.66 -131.78 -0.09 1.30 16 3 N -0.69 -5.34 4.09 -47.99 -0.20 -5.54 16 4 C 0.51 4.35 7.31 -11.59 -0.08 4.27 16 5 O -0.51 -4.99 12.70 5.50 0.07 -4.92 16 6 C 0.51 4.21 8.16 -11.58 -0.09 4.12 16 7 N -0.82 -3.95 8.87 30.90 0.27 -3.68 16 8 O -0.52 -5.75 17.31 5.50 0.10 -5.65 16 9 C -0.14 -1.02 4.96 -26.61 -0.13 -1.15 16 10 C 0.10 0.98 6.07 -3.71 -0.02 0.96 16 11 N -0.62 -8.04 2.97 -172.76 -0.51 -8.55 16 12 C 0.53 9.50 7.72 -10.98 -0.08 9.41 16 13 O -0.52 -11.18 15.27 5.56 0.08 -11.10 16 14 C -0.12 -2.32 4.50 36.01 0.16 -2.16 16 15 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 16 C -0.52 -14.84 10.04 30.94 0.31 -14.53 16 17 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 18 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 19 N -0.88 -26.41 13.97 55.49 0.78 -25.64 16 20 Si 0.86 21.74 27.74 -169.99 -4.72 17.02 16 21 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 24 C 0.12 1.39 6.17 -3.71 -0.02 1.36 16 25 C -0.14 -1.40 4.67 -26.61 -0.12 -1.52 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.69 6.17 -51.93 -0.32 0.37 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.41 2.98 6.74 -40.82 -0.28 2.70 16 30 H 0.41 1.42 8.30 -40.82 -0.34 1.08 16 31 H 0.41 1.27 8.93 -40.82 -0.36 0.90 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.55 6.94 -51.93 -0.36 0.19 16 35 H 0.10 0.95 5.93 -51.93 -0.31 0.64 16 36 H 0.10 1.71 7.94 -51.91 -0.41 1.30 16 37 H 0.10 1.69 7.69 -51.91 -0.40 1.29 16 38 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.09 1.32 7.00 -51.93 -0.36 0.95 16 40 H 0.06 0.67 7.74 -51.93 -0.40 0.27 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.10 0.97 6.20 -51.93 -0.32 0.65 16 LS Contribution 353.22 15.07 5.32 5.32 Total: -1.00 -35.84 353.22 -6.32 -42.16 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.56 Total: 2.30 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 0.04 Total: 3.86 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.34 Total: -43.40 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: 0.25 Total: -21.67 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.72 Total: 17.02 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.84 -6.32 -42.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072887605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.134 kcal (2) G-P(sol) polarization free energy of solvation -35.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds