Wall clock time and date at job start Tue Mar 31 2020 06:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46273 * 2 1 4 4 C 1.34774 * 120.00002 * 299.97492 * 3 2 1 5 5 O 1.21281 * 120.00174 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00265 * 180.02562 * 4 3 2 7 7 S 1.80994 * 109.47422 * 179.97438 * 6 4 3 8 8 C 1.76200 * 100.00305 * 180.02562 * 7 6 4 9 9 H 1.08007 * 119.99390 * 359.97438 * 8 7 6 10 10 C 1.38791 * 120.00169 * 180.02562 * 8 7 6 11 11 N 1.31630 * 120.00302 * 359.97438 * 10 8 7 12 12 Si 1.86810 * 119.99893 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47032 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.46802 * 119.99866 * 12 10 8 15 15 H 1.48497 * 109.46887 * 240.00046 * 12 10 8 16 16 C 1.53043 * 109.45616 * 119.97476 * 2 1 3 17 17 C 1.53188 * 109.33594 * 181.36622 * 16 2 1 18 18 N 1.46932 * 108.77464 * 305.41382 * 17 16 2 19 19 C 1.34773 * 120.60871 * 233.57739 * 18 17 16 20 20 O 1.21347 * 120.00807 * 171.32512 * 19 18 17 21 21 C 1.49454 * 119.99731 * 351.32807 * 19 18 17 22 22 N 1.34782 * 120.00061 * 173.21747 * 21 19 18 23 23 O 1.21350 * 119.99984 * 353.22285 * 21 19 18 24 24 C 1.46930 * 118.76305 * 53.55689 * 18 17 16 25 25 C 1.53045 * 109.45674 * 240.03930 * 2 1 3 26 26 H 1.09004 * 109.46860 * 300.02683 * 1 2 3 27 27 H 1.09003 * 109.47043 * 60.02444 * 1 2 3 28 28 H 1.08997 * 109.47122 * 180.02562 * 1 2 3 29 29 H 0.97002 * 119.99972 * 119.96998 * 3 2 1 30 30 H 1.08997 * 109.46939 * 299.99865 * 6 4 3 31 31 H 1.09004 * 109.46887 * 59.99664 * 6 4 3 32 32 H 0.96996 * 119.99978 * 179.97438 * 11 10 8 33 33 H 1.08995 * 109.49789 * 301.33102 * 16 2 1 34 34 H 1.08995 * 109.49738 * 61.40011 * 16 2 1 35 35 H 1.09000 * 109.58953 * 65.16965 * 17 16 2 36 36 H 1.08997 * 109.58704 * 185.58922 * 17 16 2 37 37 H 0.96992 * 119.99791 * 0.02562 * 22 21 19 38 38 H 0.96995 * 119.99393 * 179.97438 * 22 21 19 39 39 H 1.09006 * 109.58492 * 186.62775 * 24 18 17 40 40 H 1.08992 * 109.59022 * 66.19997 * 24 18 17 41 41 H 1.08995 * 109.49669 * 298.56795 * 25 2 1 42 42 H 1.08997 * 109.49417 * 58.63204 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 1.6929 2.2109 -1.0111 5 8 0.9964 1.8139 -1.9211 6 6 2.1954 3.6317 -1.0114 7 16 1.5931 4.4844 -2.4899 8 6 2.3099 6.0744 -2.2395 9 1 2.9124 6.2632 -1.3632 10 6 2.0994 7.0846 -3.1677 11 7 1.3646 6.8547 -4.2354 12 14 2.8587 8.7705 -2.9018 13 1 3.6332 8.7703 -1.6348 14 1 3.7631 9.0903 -4.0354 15 1 1.7829 9.7912 -2.8236 16 6 2.0398 -0.7210 1.2500 17 6 3.5713 -0.6896 1.2646 18 7 4.0678 -1.2490 -0.0001 19 6 4.9616 -2.2577 -0.0003 20 8 5.2458 -2.8165 -1.0393 21 6 5.6029 -2.6880 1.2792 22 7 6.3906 -3.7815 1.3039 23 8 5.4144 -2.0531 2.2960 24 6 3.5714 -0.6885 -1.2643 25 6 2.0398 -0.7207 -1.2502 26 1 -0.3633 0.5143 0.8898 27 1 -0.3633 0.5135 -0.8902 28 1 -0.3633 -1.0276 0.0005 29 1 2.5754 1.6987 0.7277 30 1 1.8321 4.1458 -0.1217 31 1 3.2855 3.6315 -1.0112 32 1 1.2172 7.5608 -4.8839 33 1 1.6572 -0.2210 2.1398 34 1 1.6972 -1.7556 1.2384 35 1 3.9148 0.3397 1.3681 36 1 3.9411 -1.2859 2.0987 37 1 6.5415 -4.2888 0.4911 38 1 6.8070 -4.0605 2.1342 39 1 3.9416 -1.2844 -2.0986 40 1 3.9143 0.3410 -1.3673 41 1 1.6977 -1.7555 -1.2385 42 1 1.6567 -0.2208 -2.1398 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073228127.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:46 Heat of formation + Delta-G solvation = -92.355982 kcal Electronic energy + Delta-G solvation = -26396.027224 eV Core-core repulsion = 22502.947021 eV Total energy + Delta-G solvation = -3893.080203 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 7.58 seconds Orbital eigenvalues (eV) -41.37974 -40.11212 -38.69042 -37.55801 -35.05018 -33.92731 -32.43539 -32.08946 -31.42899 -29.02739 -28.42059 -25.62309 -25.48186 -23.79150 -22.84800 -21.33301 -20.45982 -19.23646 -18.27165 -17.85857 -17.53826 -16.79225 -16.37980 -16.32373 -15.54539 -15.44554 -15.16226 -14.81028 -14.55690 -14.41716 -14.17858 -13.98967 -13.72420 -13.55939 -13.22024 -12.92484 -12.64416 -12.28281 -12.05506 -11.97015 -11.82709 -11.70448 -11.37068 -11.07858 -11.03497 -10.98531 -10.75650 -10.72640 -10.35734 -9.80683 -9.61373 -9.20734 -9.09146 -9.06525 -8.79121 -8.23898 -6.50160 -6.22546 -3.92677 1.02407 2.09500 2.80389 3.01929 3.07914 3.21187 3.27611 3.29911 3.32879 3.70031 4.04973 4.19881 4.45580 4.59143 4.71840 4.87405 5.01142 5.12691 5.13036 5.20442 5.35929 5.50374 5.56300 5.61793 5.67487 5.70036 5.73767 5.85010 5.88348 5.94809 5.97611 6.12900 6.15055 6.31060 6.36984 6.48587 6.72263 6.90275 7.37362 7.59413 7.61176 7.73392 8.34828 8.62361 9.23276 10.84871 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018782 B = 0.002731 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.441258 B =10250.705573 C =10841.477467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.178 3.822 3 N -0.731 5.731 4 C 0.535 3.465 5 O -0.512 6.512 6 C -0.155 4.155 7 S -0.058 6.058 8 C -0.535 4.535 9 H 0.072 0.928 10 C 0.073 3.927 11 N -0.867 5.867 12 Si 0.918 3.082 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.280 1.280 16 C -0.136 4.136 17 C 0.068 3.932 18 N -0.574 5.574 19 C 0.504 3.496 20 O -0.523 6.523 21 C 0.516 3.484 22 N -0.821 5.821 23 O -0.514 6.514 24 C 0.111 3.889 25 C -0.144 4.144 26 H 0.055 0.945 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.396 0.604 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.268 0.732 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.140 0.860 37 H 0.415 0.585 38 H 0.411 0.589 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.422 -21.336 14.306 26.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.091 3.909 3 N -0.386 5.386 4 C 0.322 3.678 5 O -0.387 6.387 6 C -0.306 4.306 7 S 0.168 5.832 8 C -0.683 4.683 9 H 0.091 0.909 10 C -0.136 4.136 11 N -0.503 5.503 12 Si 0.744 3.256 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.206 1.206 16 C -0.175 4.175 17 C -0.053 4.053 18 N -0.307 5.307 19 C 0.286 3.714 20 O -0.400 6.400 21 C 0.296 3.704 22 N -0.386 5.386 23 O -0.391 6.391 24 C -0.011 4.011 25 C -0.182 4.182 26 H 0.074 0.926 27 H 0.103 0.897 28 H 0.077 0.923 29 H 0.231 0.769 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.157 0.843 37 H 0.245 0.755 38 H 0.243 0.757 39 H 0.113 0.887 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.095 -21.698 12.599 25.603 hybrid contribution 1.788 1.480 1.555 2.794 sum 6.883 -20.217 14.154 25.622 Atomic orbital electron populations 1.22213 0.93885 1.02053 1.03976 1.20224 0.94435 0.81481 0.94717 1.46203 1.55101 1.11316 1.26026 1.20236 0.79575 0.86791 0.81216 1.90633 1.36367 1.76447 1.35204 1.23553 1.04298 0.95137 1.07590 1.85359 1.67575 1.08284 1.21969 1.22905 1.37186 0.96927 1.11270 0.90946 1.24988 0.95066 0.99068 0.94474 1.70023 1.36409 1.33587 1.10274 0.86127 0.78877 0.82242 0.78315 1.19627 1.20572 1.20577 1.22257 0.95511 1.01764 0.97926 1.22859 0.93810 1.01505 0.87150 1.48021 1.40422 1.33231 1.09032 1.19947 0.81158 0.81251 0.89085 1.90771 1.62285 1.53707 1.33224 1.20254 0.79760 0.81244 0.89154 1.43567 1.49934 1.28712 1.16393 1.90564 1.59704 1.53477 1.35315 1.21798 0.94609 0.99447 0.85213 1.22351 0.94311 1.01091 1.00491 0.92570 0.89701 0.92264 0.76937 0.89361 0.89440 0.92247 0.89638 0.90114 0.91019 0.84275 0.75469 0.75663 0.88665 0.90410 0.90989 0.87608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 8.40 37.16 0.31 -1.58 16 2 C 0.18 1.93 0.66 -131.77 -0.09 1.85 16 3 N -0.73 -8.94 4.10 -47.56 -0.19 -9.14 16 4 C 0.54 9.16 7.27 -10.98 -0.08 9.08 16 5 O -0.51 -10.41 12.08 5.56 0.07 -10.34 16 6 C -0.16 -3.01 6.16 36.01 0.22 -2.79 16 7 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 8 C -0.53 -15.08 9.50 30.94 0.29 -14.78 16 9 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 10 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 11 N -0.87 -26.00 13.22 55.49 0.73 -25.26 16 12 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 13 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 C -0.14 -1.12 4.96 -26.61 -0.13 -1.25 16 17 C 0.07 0.60 5.71 -3.71 -0.02 0.58 16 18 N -0.57 -6.02 2.97 -173.27 -0.52 -6.54 16 19 C 0.50 5.43 7.73 -11.58 -0.09 5.34 16 20 O -0.52 -6.70 15.93 5.50 0.09 -6.61 16 21 C 0.52 4.54 8.01 -11.58 -0.09 4.45 16 22 N -0.82 -4.22 8.87 30.91 0.27 -3.95 16 23 O -0.51 -5.33 14.02 5.50 0.08 -5.25 16 24 C 0.11 1.31 6.19 -3.71 -0.02 1.29 16 25 C -0.14 -1.70 4.67 -26.61 -0.12 -1.83 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 1.27 6.17 -51.93 -0.32 0.95 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.40 3.94 7.27 -40.82 -0.30 3.65 16 30 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 31 H 0.09 1.59 8.14 -51.91 -0.42 1.16 16 32 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.62 6.94 -51.93 -0.36 0.26 16 36 H 0.14 1.26 4.32 -54.76 -0.24 1.03 16 37 H 0.41 1.70 8.32 -40.82 -0.34 1.36 16 38 H 0.41 1.22 8.93 -40.82 -0.36 0.85 16 39 H 0.10 1.19 7.01 -51.93 -0.36 0.83 16 40 H 0.08 1.00 7.73 -51.93 -0.40 0.60 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.11 1.56 6.20 -51.93 -0.32 1.24 16 LS Contribution 353.36 15.07 5.33 5.33 Total: -1.00 -34.97 353.36 -6.81 -41.78 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.51 Total: 5.07 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 0.08 Total: 2.35 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 0.30 Total: -44.88 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: 0.23 Total: -22.20 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.97 -6.81 -41.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073228127.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.578 kcal (2) G-P(sol) polarization free energy of solvation -34.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.58 seconds