Wall clock time and date at job start Tue Mar 31 2020 06:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46273 * 2 1 4 4 C 1.34774 * 120.00002 * 299.97492 * 3 2 1 5 5 O 1.21281 * 120.00174 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00265 * 180.02562 * 4 3 2 7 7 S 1.80994 * 109.47422 * 179.97438 * 6 4 3 8 8 C 1.76200 * 100.00305 * 180.02562 * 7 6 4 9 9 H 1.08007 * 119.99390 * 359.97438 * 8 7 6 10 10 C 1.38791 * 120.00169 * 180.02562 * 8 7 6 11 11 N 1.31630 * 120.00302 * 359.97438 * 10 8 7 12 12 Si 1.86810 * 119.99893 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47032 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.46802 * 119.99866 * 12 10 8 15 15 H 1.48497 * 109.46887 * 240.00046 * 12 10 8 16 16 C 1.53043 * 109.45616 * 119.97476 * 2 1 3 17 17 C 1.53188 * 109.33594 * 181.36622 * 16 2 1 18 18 N 1.46932 * 108.77464 * 305.41382 * 17 16 2 19 19 C 1.34773 * 120.60871 * 233.57739 * 18 17 16 20 20 O 1.21347 * 120.00807 * 171.32512 * 19 18 17 21 21 C 1.49454 * 119.99731 * 351.32807 * 19 18 17 22 22 N 1.34782 * 120.00061 * 173.21747 * 21 19 18 23 23 O 1.21350 * 119.99984 * 353.22285 * 21 19 18 24 24 C 1.46930 * 118.76305 * 53.55689 * 18 17 16 25 25 C 1.53045 * 109.45674 * 240.03930 * 2 1 3 26 26 H 1.09004 * 109.46860 * 300.02683 * 1 2 3 27 27 H 1.09003 * 109.47043 * 60.02444 * 1 2 3 28 28 H 1.08997 * 109.47122 * 180.02562 * 1 2 3 29 29 H 0.97002 * 119.99972 * 119.96998 * 3 2 1 30 30 H 1.08997 * 109.46939 * 299.99865 * 6 4 3 31 31 H 1.09004 * 109.46887 * 59.99664 * 6 4 3 32 32 H 0.96996 * 119.99978 * 179.97438 * 11 10 8 33 33 H 1.08995 * 109.49789 * 301.33102 * 16 2 1 34 34 H 1.08995 * 109.49738 * 61.40011 * 16 2 1 35 35 H 1.09000 * 109.58953 * 65.16965 * 17 16 2 36 36 H 1.08997 * 109.58704 * 185.58922 * 17 16 2 37 37 H 0.96992 * 119.99791 * 0.02562 * 22 21 19 38 38 H 0.96995 * 119.99393 * 179.97438 * 22 21 19 39 39 H 1.09006 * 109.58492 * 186.62775 * 24 18 17 40 40 H 1.08992 * 109.59022 * 66.19997 * 24 18 17 41 41 H 1.08995 * 109.49669 * 298.56795 * 25 2 1 42 42 H 1.08997 * 109.49417 * 58.63204 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 1.6929 2.2109 -1.0111 5 8 0.9964 1.8139 -1.9211 6 6 2.1954 3.6317 -1.0114 7 16 1.5931 4.4844 -2.4899 8 6 2.3099 6.0744 -2.2395 9 1 2.9124 6.2632 -1.3632 10 6 2.0994 7.0846 -3.1677 11 7 1.3646 6.8547 -4.2354 12 14 2.8587 8.7705 -2.9018 13 1 3.6332 8.7703 -1.6348 14 1 3.7631 9.0903 -4.0354 15 1 1.7829 9.7912 -2.8236 16 6 2.0398 -0.7210 1.2500 17 6 3.5713 -0.6896 1.2646 18 7 4.0678 -1.2490 -0.0001 19 6 4.9616 -2.2577 -0.0003 20 8 5.2458 -2.8165 -1.0393 21 6 5.6029 -2.6880 1.2792 22 7 6.3906 -3.7815 1.3039 23 8 5.4144 -2.0531 2.2960 24 6 3.5714 -0.6885 -1.2643 25 6 2.0398 -0.7207 -1.2502 26 1 -0.3633 0.5143 0.8898 27 1 -0.3633 0.5135 -0.8902 28 1 -0.3633 -1.0276 0.0005 29 1 2.5754 1.6987 0.7277 30 1 1.8321 4.1458 -0.1217 31 1 3.2855 3.6315 -1.0112 32 1 1.2172 7.5608 -4.8839 33 1 1.6572 -0.2210 2.1398 34 1 1.6972 -1.7556 1.2384 35 1 3.9148 0.3397 1.3681 36 1 3.9411 -1.2859 2.0987 37 1 6.5415 -4.2888 0.4911 38 1 6.8070 -4.0605 2.1342 39 1 3.9416 -1.2844 -2.0986 40 1 3.9143 0.3410 -1.3673 41 1 1.6977 -1.7555 -1.2385 42 1 1.6567 -0.2208 -2.1398 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073228127.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:45 Heat of formation + Delta-G solvation = -120.723107 kcal Electronic energy + Delta-G solvation = -26397.257315 eV Core-core repulsion = 22502.947021 eV Total energy + Delta-G solvation = -3894.310294 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.22674 -41.14625 -39.54587 -38.63559 -35.97774 -34.60610 -34.57391 -33.29002 -32.28386 -30.26154 -29.52844 -27.64793 -26.42567 -24.60391 -23.71652 -22.43509 -21.34075 -20.23427 -19.85169 -18.97803 -18.25710 -17.89187 -17.47309 -17.13772 -16.87819 -16.60173 -16.48186 -16.17609 -15.85180 -15.31395 -15.27631 -15.07323 -14.80380 -14.66821 -14.43314 -14.34150 -13.85249 -13.59353 -13.15032 -13.10777 -12.92819 -12.82582 -12.71214 -12.65903 -12.57343 -12.24165 -11.93096 -11.69680 -11.65166 -11.15504 -10.92214 -10.65673 -10.28841 -10.24491 -10.12967 -9.78419 -8.63716 -8.34554 -6.11075 0.27277 1.28383 1.34546 1.40729 1.47964 1.58913 1.70005 2.04645 2.26208 2.33447 2.60810 2.99700 3.33244 3.44189 3.60413 3.73243 3.86153 3.99524 4.03890 4.21409 4.32396 4.35383 4.48634 4.54931 4.67757 4.73229 4.80767 4.83054 4.93104 5.00016 5.03336 5.11825 5.31663 5.38472 5.42516 5.63820 5.69519 5.89582 6.14847 6.20303 6.60341 6.65333 6.98890 7.07373 7.34021 8.74658 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018782 B = 0.002731 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.441258 B =10250.705573 C =10841.477467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.177 3.823 3 N -0.707 5.707 4 C 0.539 3.461 5 O -0.548 6.548 6 C -0.132 4.132 7 S -0.145 6.145 8 C -0.545 4.545 9 H 0.080 0.920 10 C 0.013 3.987 11 N -0.911 5.911 12 Si 0.997 3.003 13 H -0.257 1.257 14 H -0.275 1.275 15 H -0.274 1.274 16 C -0.125 4.125 17 C 0.068 3.932 18 N -0.573 5.573 19 C 0.499 3.501 20 O -0.549 6.549 21 C 0.520 3.480 22 N -0.798 5.798 23 O -0.530 6.530 24 C 0.117 3.883 25 C -0.138 4.138 26 H 0.065 0.935 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.412 0.588 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.271 0.729 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.147 0.853 37 H 0.422 0.578 38 H 0.425 0.575 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.736 -21.953 17.292 28.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.091 3.909 3 N -0.362 5.362 4 C 0.324 3.676 5 O -0.426 6.426 6 C -0.284 4.284 7 S 0.082 5.918 8 C -0.693 4.693 9 H 0.098 0.902 10 C -0.192 4.192 11 N -0.547 5.547 12 Si 0.819 3.181 13 H -0.181 1.181 14 H -0.200 1.200 15 H -0.199 1.199 16 C -0.163 4.163 17 C -0.053 4.053 18 N -0.306 5.306 19 C 0.282 3.718 20 O -0.428 6.428 21 C 0.299 3.701 22 N -0.364 5.364 23 O -0.409 6.409 24 C -0.005 4.005 25 C -0.177 4.177 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.249 0.751 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.080 0.920 33 H 0.128 0.872 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.163 0.837 37 H 0.254 0.746 38 H 0.260 0.740 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.444 -22.362 15.648 28.043 hybrid contribution 1.405 1.517 0.662 2.171 sum 7.849 -20.845 16.310 27.606 Atomic orbital electron populations 1.22155 0.94072 1.02989 1.02529 1.20393 0.94279 0.80376 0.95816 1.45958 1.54072 1.11371 1.24806 1.19873 0.79423 0.86383 0.81892 1.90647 1.38150 1.76842 1.36924 1.23404 1.04946 0.95986 1.04043 1.85505 1.68985 1.09777 1.27493 1.23232 1.37134 0.97333 1.11595 0.90167 1.26096 0.95417 1.03648 0.93994 1.70182 1.38022 1.35116 1.11430 0.84936 0.78036 0.76402 0.78768 1.18114 1.20015 1.19931 1.22232 0.94863 1.02296 0.96887 1.23000 0.94151 1.01827 0.86328 1.48070 1.40365 1.33179 1.08982 1.20388 0.80853 0.80897 0.89668 1.90760 1.63051 1.54597 1.34355 1.19853 0.80268 0.82032 0.87931 1.43436 1.48306 1.27222 1.17461 1.90558 1.60718 1.54299 1.35275 1.21572 0.94500 0.98556 0.85921 1.22243 0.94232 1.01511 0.99733 0.91550 0.93479 0.90223 0.75116 0.87626 0.87888 0.92044 0.87241 0.88784 0.90517 0.83660 0.74633 0.74010 0.89847 0.91694 0.89768 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 8.40 71.98 0.60 -2.87 16 2 C 0.18 3.56 0.66 3.64 0.00 3.56 16 3 N -0.71 -16.23 4.10 -422.79 -1.73 -17.96 16 4 C 0.54 18.42 7.27 87.66 0.64 19.06 16 5 O -0.55 -23.14 12.08 -3.03 -0.04 -23.17 16 6 C -0.13 -5.09 6.16 71.24 0.44 -4.66 16 7 S -0.14 -7.90 20.57 -56.49 -1.16 -9.06 16 8 C -0.55 -31.00 9.50 67.95 0.65 -30.35 16 9 H 0.08 4.27 7.80 -2.91 -0.02 4.24 16 10 C 0.01 0.75 5.49 84.86 0.47 1.22 16 11 N -0.91 -55.89 13.22 21.65 0.29 -55.60 16 12 Si 1.00 43.71 29.55 68.60 2.03 45.74 16 13 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 14 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 15 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 16 C -0.12 -1.62 4.96 30.67 0.15 -1.47 16 17 C 0.07 1.01 5.71 86.36 0.49 1.50 16 18 N -0.57 -11.18 2.97 -820.48 -2.44 -13.62 16 19 C 0.50 10.08 7.73 87.27 0.67 10.76 16 20 O -0.55 -13.70 15.93 -3.24 -0.05 -13.75 16 21 C 0.52 8.02 8.01 87.27 0.70 8.72 16 22 N -0.80 -6.30 8.87 -174.49 -1.55 -7.85 16 23 O -0.53 -9.63 14.02 -3.25 -0.05 -9.67 16 24 C 0.12 2.75 6.19 86.36 0.53 3.28 16 25 C -0.14 -3.25 4.67 30.67 0.14 -3.11 16 26 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.05 1.42 6.17 -2.39 -0.01 1.41 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.41 7.06 7.27 -92.71 -0.67 6.39 16 30 H 0.11 3.69 8.14 -2.40 -0.02 3.67 16 31 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 32 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 33 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 1.08 6.94 -2.39 -0.02 1.06 16 36 H 0.15 2.18 4.32 -47.27 -0.20 1.97 16 37 H 0.42 2.56 8.32 -92.71 -0.77 1.79 16 38 H 0.42 1.35 8.93 -92.71 -0.83 0.52 16 39 H 0.08 2.15 7.01 -2.38 -0.02 2.14 16 40 H 0.06 1.68 7.73 -2.39 -0.02 1.66 16 41 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 42 H 0.07 2.26 6.20 -2.39 -0.01 2.24 16 Total: -1.00 -78.82 353.36 -0.58 -79.39 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -1.37 Total: 19.94 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 5.49 Total: 5.63 kcal Atomic # 7 Polarization: -89.60 SS G_CDS: -5.43 Total: -95.03 kcal Atomic # 8 Polarization: -46.46 SS G_CDS: -0.13 Total: -46.60 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -7.90 SS G_CDS: -1.16 Total: -9.06 kcal Total: -78.82 -0.58 -79.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073228127.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.330 kcal (2) G-P(sol) polarization free energy of solvation -78.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds