Wall clock time and date at job start Tue Mar 31 2020 06:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99660 * 2 1 4 4 H 1.48497 * 109.47015 * 270.00043 * 3 2 1 5 5 H 1.48501 * 109.47040 * 30.00283 * 3 2 1 6 6 H 1.48497 * 109.46940 * 150.00094 * 3 2 1 7 7 C 1.38806 * 120.00504 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00537 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99793 * 359.97438 * 7 2 1 10 10 C 1.47558 * 125.65903 * 359.95840 * 9 7 2 11 11 C 1.55175 * 105.03277 * 203.92840 * 10 9 7 12 12 C 1.53720 * 101.38392 * 324.50845 * 11 10 9 13 13 C 1.51974 * 116.51358 * 262.83433 * 12 11 10 14 14 N 1.47357 * 87.57940 * 217.75319 * 13 12 11 15 15 C 1.34779 * 135.87550 * 205.83147 * 14 13 12 16 16 O 1.21282 * 120.00216 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99525 * 180.02562 * 15 14 13 18 18 H 1.09002 * 109.77115 * 40.72330 * 17 15 14 19 19 C 1.53743 * 109.70036 * 280.19380 * 17 15 14 20 20 C 1.54920 * 105.97519 * 194.86085 * 19 17 15 21 21 S 1.83174 * 102.70862 * 25.02535 * 20 19 17 22 22 O 1.42107 * 111.27365 * 248.96749 * 21 20 19 23 23 O 1.42095 * 111.27574 * 109.62208 * 21 20 19 24 24 N 1.47989 * 109.76453 * 161.45070 * 17 15 14 25 25 C 1.47349 * 88.24236 * 26.08257 * 14 13 12 26 26 C 1.47398 * 125.66041 * 179.97438 * 9 7 2 27 27 H 0.97002 * 120.00443 * 0.02562 * 1 2 3 28 28 H 1.09000 * 110.32802 * 322.81973 * 10 9 7 29 29 H 1.09005 * 110.32767 * 84.93520 * 10 9 7 30 30 H 1.08999 * 111.04263 * 206.48053 * 11 10 9 31 31 H 1.09000 * 111.04020 * 82.53591 * 11 10 9 32 32 H 1.09007 * 113.53629 * 103.07755 * 13 12 11 33 33 H 1.09000 * 113.59888 * 332.44029 * 13 12 11 34 34 H 1.09006 * 110.25135 * 75.66355 * 19 17 15 35 35 H 1.09006 * 110.06943 * 313.96143 * 19 17 15 36 36 H 1.08995 * 110.76126 * 266.71980 * 20 19 17 37 37 H 1.09002 * 110.76264 * 143.32510 * 20 19 17 38 38 H 0.97001 * 127.76599 * 343.81705 * 24 17 15 39 39 H 1.09004 * 113.52937 * 88.59043 * 25 14 13 40 40 H 1.08991 * 113.53677 * 219.23727 * 25 14 13 41 41 H 1.08993 * 109.99363 * 58.48278 * 26 9 7 42 42 H 1.09005 * 110.02853 * 297.17692 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0016 10 6 -0.1427 -2.5336 0.0031 11 6 -0.4075 -3.9363 0.6117 12 6 0.7830 -4.7365 0.0589 13 6 0.5241 -5.5618 -1.1906 14 7 1.4066 -6.5929 -0.6167 15 6 2.1854 -7.5796 -1.1030 16 8 2.2577 -7.7610 -2.3000 17 6 2.9655 -8.4581 -0.1592 18 1 2.3532 -8.7015 0.7091 19 6 4.2395 -7.7274 0.2954 20 6 5.1479 -8.8096 0.9309 21 16 4.5760 -10.3462 0.1141 22 8 3.9035 -11.1981 1.0313 23 8 5.5518 -10.8424 -0.7919 24 7 3.3688 -9.7023 -0.8516 25 6 1.0617 -6.0793 0.7206 26 6 1.9332 -3.7310 0.0017 27 1 -0.4851 0.8400 -0.0004 28 1 -0.5993 -1.7604 0.6211 29 1 -0.5295 -2.4815 -1.0147 30 1 -1.3530 -4.3452 0.2557 31 1 -0.3836 -3.9012 1.7009 32 1 0.9180 -5.1091 -2.1007 33 1 -0.5121 -5.8841 -1.2938 34 1 3.9934 -6.9632 1.0327 35 1 4.7375 -7.2751 -0.5622 36 1 4.9899 -8.8628 2.0080 37 1 6.1961 -8.6174 0.7019 38 1 3.0163 -10.0618 -1.6807 39 1 0.1747 -6.5451 1.1502 40 1 1.9054 -6.0597 1.4102 41 1 2.5753 -3.8494 0.8744 42 1 2.5126 -3.8787 -0.9097 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073439229.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:06 Heat of formation + Delta-G solvation = -19.311078 kcal Electronic energy + Delta-G solvation = -26670.495705 eV Core-core repulsion = 22780.582967 eV Total energy + Delta-G solvation = -3889.912738 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.97165 -39.07416 -37.42061 -36.65391 -36.19075 -35.79183 -32.39298 -32.06905 -30.08484 -28.80858 -27.33057 -26.06730 -25.62718 -23.80491 -22.83625 -20.49128 -20.27104 -19.50245 -18.42403 -18.03833 -17.56025 -16.97522 -16.51366 -16.40811 -15.74783 -15.55348 -15.33584 -14.87960 -14.52205 -14.29418 -14.07718 -13.79903 -13.68587 -13.23978 -12.77817 -12.75831 -12.47058 -12.32779 -12.27763 -12.18806 -12.16967 -11.84858 -11.64874 -11.27297 -11.04805 -11.01385 -10.86464 -10.59961 -10.32058 -10.15930 -10.04776 -9.93407 -9.80356 -9.56347 -8.79391 -8.72584 -6.93856 -5.74011 -3.15996 -0.14422 2.05913 2.37041 2.66010 3.24598 3.34908 3.40198 3.41788 3.51428 3.87443 3.99999 4.20811 4.34857 4.37750 4.46350 4.60402 4.75802 4.85293 5.06797 5.08943 5.16420 5.27963 5.36992 5.40274 5.43299 5.53266 5.58824 5.75151 5.79240 6.02477 6.15196 6.39328 6.43321 6.56598 6.62044 6.78362 7.40518 7.53193 7.58365 7.75942 7.91412 8.26389 9.12945 9.73409 10.37113 11.29968 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.023478 B = 0.002739 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.325664 B =10219.255748 C =10772.652044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.915 3.085 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.153 3.847 11 C -0.129 4.129 12 C -0.103 4.103 13 C 0.123 3.877 14 N -0.640 5.640 15 C 0.550 3.450 16 O -0.528 6.528 17 C 0.092 3.908 18 H 0.112 0.888 19 C -0.116 4.116 20 C -0.598 4.598 21 S 2.578 3.422 22 O -0.951 6.951 23 O -0.957 6.957 24 N -1.082 6.082 25 C 0.107 3.893 26 C 0.165 3.835 27 H 0.253 0.747 28 H 0.107 0.893 29 H 0.014 0.986 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.441 0.559 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.029 0.971 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.085 -16.766 4.908 17.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.028 3.972 11 C -0.168 4.168 12 C -0.104 4.104 13 C 0.001 3.999 14 N -0.375 5.375 15 C 0.336 3.664 16 O -0.404 6.404 17 C -0.020 4.020 18 H 0.130 0.870 19 C -0.156 4.156 20 C -0.729 4.729 21 S 2.672 3.328 22 O -0.941 6.941 23 O -0.947 6.947 24 N -0.850 5.850 25 C -0.016 4.016 26 C 0.039 3.961 27 H 0.064 0.936 28 H 0.125 0.875 29 H 0.032 0.968 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.134 0.866 35 H 0.120 0.880 36 H 0.163 0.837 37 H 0.165 0.835 38 H 0.284 0.716 39 H 0.110 0.890 40 H 0.099 0.901 41 H 0.047 0.953 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 4.553 -17.791 4.279 18.857 hybrid contribution 0.196 1.380 -0.319 1.430 sum 4.749 -16.412 3.960 17.538 Atomic orbital electron populations 1.69780 1.04891 1.24907 1.57404 1.24777 0.95732 0.97737 1.02231 0.86076 0.78530 0.83268 0.77621 1.21600 1.21615 1.20683 1.19047 0.90493 0.82341 1.43395 0.90495 1.44602 1.01905 0.99497 1.87018 1.21987 0.84582 0.92252 0.98397 1.22775 0.94708 0.98806 1.00487 1.22182 0.99841 0.93075 0.95343 1.22918 0.93852 0.84438 0.98661 1.49802 1.44383 1.31851 1.11468 1.19422 0.79481 0.78993 0.88461 1.90736 1.65028 1.69145 1.15515 1.21845 0.97648 0.86614 0.95892 0.87035 1.22355 0.92347 0.97797 1.03119 1.30752 1.10489 1.18614 1.13020 1.06165 0.74776 0.76184 0.75664 1.93663 1.72957 1.62452 1.65013 1.93620 1.60815 1.78522 1.61702 1.55376 1.56986 1.33380 1.39239 1.23149 1.00635 0.91954 0.85825 1.20732 0.92048 0.85106 0.98201 0.93646 0.87509 0.96825 0.91770 0.91207 0.89921 0.89514 0.86615 0.88025 0.83708 0.83516 0.71641 0.89030 0.90051 0.95314 0.95779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.55 10.09 55.49 0.56 -24.99 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 21.20 29.55 -169.99 -5.02 16.18 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.22 -5.91 10.28 -15.06 -0.15 -6.07 16 8 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.60 -14.19 3.41 -170.38 -0.58 -14.77 16 10 C 0.15 3.33 5.90 -2.31 -0.01 3.32 16 11 C -0.13 -1.98 6.49 -25.21 -0.16 -2.14 16 12 C -0.10 -1.45 1.05 -155.10 -0.16 -1.61 16 13 C 0.12 1.66 7.89 -7.59 -0.06 1.60 16 14 N -0.64 -7.71 3.70 -185.46 -0.69 -8.40 16 15 C 0.55 6.95 7.33 -10.98 -0.08 6.87 16 16 O -0.53 -8.68 17.05 5.56 0.09 -8.59 16 17 C 0.09 0.82 3.10 -67.88 -0.21 0.61 16 18 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 19 C -0.12 -0.80 6.10 -25.33 -0.15 -0.95 16 20 C -0.60 -3.07 7.49 38.17 0.29 -2.79 16 21 S 2.58 22.62 6.41 -107.50 -0.69 21.93 16 22 O -0.95 -11.05 18.14 -57.41 -1.04 -12.10 16 23 O -0.96 -11.90 18.14 -57.41 -1.04 -12.94 16 24 N -1.08 -10.26 6.62 -4.70 -0.03 -10.29 16 25 C 0.11 1.07 7.82 -7.45 -0.06 1.01 16 26 C 0.17 3.01 6.79 -3.61 -0.02 2.99 16 27 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.11 2.68 5.89 -51.93 -0.31 2.37 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.85 7.98 -51.93 -0.41 0.43 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 1.28 8.06 -51.93 -0.42 0.87 16 33 H 0.09 1.02 8.04 -51.93 -0.42 0.61 16 34 H 0.12 0.61 7.79 -51.93 -0.40 0.21 16 35 H 0.10 0.78 8.09 -51.93 -0.42 0.36 16 36 H 0.14 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.15 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.44 4.28 8.53 -40.75 -0.35 3.94 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.66 7.74 -51.93 -0.40 0.26 16 41 H 0.03 0.50 8.07 -51.93 -0.42 0.09 16 42 H 0.02 0.47 7.92 -51.93 -0.41 0.06 16 LS Contribution 353.25 15.07 5.32 5.32 Total: -1.00 -36.27 353.25 -10.05 -46.32 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.04 Total: -0.19 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -0.89 Total: 2.50 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: -0.74 Total: -58.45 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -1.99 Total: -33.62 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 22.62 SS G_CDS: -0.69 Total: 21.93 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.27 -10.05 -46.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073439229.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.012 kcal (2) G-P(sol) polarization free energy of solvation -36.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds