Wall clock time and date at job start Tue Mar 31 2020 07:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.49996 * 2 1 4 4 C 1.53193 * 109.49683 * 120.06294 * 2 1 3 5 5 N 1.46929 * 108.77475 * 174.61476 * 4 2 1 6 6 C 1.34774 * 120.62441 * 126.36759 * 5 4 2 7 7 O 1.21344 * 120.00353 * 1.96170 * 6 5 4 8 8 C 1.49455 * 119.99866 * 181.95357 * 6 5 4 9 9 N 1.34767 * 120.00238 * 172.79790 * 8 6 5 10 10 O 1.21358 * 119.99786 * 353.08039 * 8 6 5 11 11 C 1.46918 * 118.74186 * 306.64978 * 5 4 2 12 12 C 1.52765 * 109.00912 * 53.30296 * 11 5 4 13 13 C 1.53034 * 109.38562 * 305.58816 * 12 11 5 14 14 H 1.08996 * 109.46698 * 301.22235 * 13 12 11 15 15 N 1.46504 * 109.45079 * 181.24844 * 13 12 11 16 16 C 1.34777 * 119.99268 * 84.93849 * 15 13 12 17 17 O 1.21279 * 120.00408 * 0.02562 * 16 15 13 18 18 C 1.50698 * 119.99646 * 179.97438 * 16 15 13 19 19 S 1.80997 * 109.47220 * 180.02562 * 18 16 15 20 20 C 1.76200 * 100.00132 * 180.02562 * 19 18 16 21 21 H 1.08003 * 120.00040 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00075 * 179.97438 * 20 19 18 23 23 N 1.31629 * 120.00034 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00004 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.46974 * 89.99613 * 24 22 20 26 26 H 1.48495 * 109.47267 * 209.99908 * 24 22 20 27 27 H 1.48503 * 109.47149 * 329.99963 * 24 22 20 28 28 H 1.09004 * 109.47456 * 299.93402 * 1 2 3 29 29 H 1.09007 * 109.47380 * 59.93166 * 1 2 3 30 30 H 1.09000 * 109.47371 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.58279 * 54.83604 * 4 2 1 32 32 H 1.08997 * 109.58676 * 294.41017 * 4 2 1 33 33 H 0.97003 * 120.00440 * 180.27810 * 9 8 6 34 34 H 0.96999 * 120.00342 * 0.27424 * 9 8 6 35 35 H 1.08995 * 109.59071 * 173.13979 * 11 5 4 36 36 H 1.09006 * 109.58393 * 293.56747 * 11 5 4 37 37 H 1.09005 * 109.56185 * 185.55415 * 12 11 5 38 38 H 1.09001 * 109.35364 * 65.50383 * 12 11 5 39 39 H 0.97000 * 120.00238 * 264.94438 * 15 13 12 40 40 H 1.09005 * 109.47478 * 300.00618 * 18 16 15 41 41 H 1.09003 * 109.47450 * 60.00493 * 18 16 15 42 42 H 0.97005 * 120.00077 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 1.2498 5 7 3.5047 -0.8282 1.1702 6 6 4.2807 -0.3841 2.1787 7 8 3.7710 0.0752 3.1795 8 6 5.7690 -0.4576 2.0644 9 7 6.5462 0.1160 3.0042 10 8 6.2777 -1.0293 1.1225 11 6 4.1061 -1.4204 -0.0323 12 6 3.5714 -0.6942 -1.2654 13 6 2.0414 -0.7230 -1.2482 14 1 1.6977 -1.7573 -1.2351 15 7 1.5274 -0.0529 -2.4453 16 6 1.4000 -0.7383 -3.5988 17 8 1.7105 -1.9097 -3.6456 18 6 0.8707 -0.0493 -4.8301 19 16 0.8179 -1.2260 -6.2043 20 6 0.1812 -0.1844 -7.4748 21 1 -0.0455 0.8500 -7.2621 22 6 -0.0281 -0.6928 -8.7493 23 7 -0.5033 0.0855 -9.6985 24 14 0.3646 -2.4816 -9.1174 25 1 -0.8361 -3.3157 -8.8569 26 1 0.7627 -2.6181 -10.5414 27 1 1.4794 -2.9331 -8.2463 28 1 -0.3634 0.5128 0.8906 29 1 -0.3634 0.5149 -0.8894 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6057 -1.7214 1.2982 32 1 1.7632 -0.1576 2.1390 33 1 7.5122 0.0718 2.9279 34 1 6.1396 0.5731 3.7569 35 1 5.1900 -1.3143 0.0111 36 1 3.8423 -2.4764 -0.0906 37 1 3.9345 -1.1888 -2.1663 38 1 3.9161 0.3398 -1.2534 39 1 1.2788 0.8839 -2.4077 40 1 -0.1341 0.3247 -4.6336 41 1 1.5241 0.7837 -5.0896 42 1 -0.6499 -0.2699 -10.5891 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073747604.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:01 Heat of formation + Delta-G solvation = -95.420590 kcal Electronic energy + Delta-G solvation = -25810.033750 eV Core-core repulsion = 21916.820656 eV Total energy + Delta-G solvation = -3893.213094 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 7.37 seconds Orbital eigenvalues (eV) -41.43250 -39.89826 -38.87474 -37.86545 -35.23334 -34.05831 -33.05767 -32.44357 -31.59249 -29.14922 -27.72357 -25.93347 -25.56796 -23.87256 -22.74714 -21.04290 -20.46974 -20.15875 -18.33314 -17.85564 -17.64156 -16.92181 -16.51335 -16.29067 -16.09724 -15.71708 -15.15352 -14.98265 -14.70378 -14.63700 -14.37602 -14.12314 -13.75581 -13.45864 -13.35943 -13.11321 -12.79863 -12.66584 -12.35365 -12.13760 -11.92227 -11.68744 -11.34868 -11.27115 -11.14311 -11.01178 -10.77817 -10.57248 -10.45507 -9.87075 -9.72960 -9.50965 -9.15325 -9.01506 -8.90825 -8.50721 -6.92306 -6.29464 -4.01185 0.92835 1.96585 2.69598 2.77058 2.95598 3.19302 3.30001 3.33671 3.50174 3.64211 3.93370 4.26170 4.32660 4.46649 4.56835 4.72547 4.88746 4.91723 5.02375 5.09614 5.15684 5.23527 5.33963 5.36531 5.48492 5.54540 5.59561 5.63653 5.75367 5.77426 5.92805 6.00180 6.01863 6.07638 6.26505 6.39596 6.54539 6.78391 7.29177 7.52647 7.59835 7.93553 8.41026 8.48162 9.16717 10.79740 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.025746 B = 0.002378 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.291694 B =11769.701284 C =12346.331612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 H 0.080 0.920 4 C 0.114 3.886 5 N -0.574 5.574 6 C 0.506 3.494 7 O -0.527 6.527 8 C 0.517 3.483 9 N -0.819 5.819 10 O -0.506 6.506 11 C 0.050 3.950 12 C -0.144 4.144 13 C 0.150 3.850 14 H 0.091 0.909 15 N -0.731 5.731 16 C 0.532 3.468 17 O -0.518 6.518 18 C -0.125 4.125 19 S -0.141 6.141 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.412 0.588 34 H 0.415 0.585 35 H 0.160 0.840 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.398 0.602 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.051 2.275 27.888 29.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 H 0.099 0.901 4 C -0.008 4.008 5 N -0.307 5.307 6 C 0.288 3.712 7 O -0.404 6.404 8 C 0.297 3.703 9 N -0.384 5.384 10 O -0.383 6.383 11 C -0.071 4.071 12 C -0.183 4.183 13 C 0.044 3.956 14 H 0.109 0.891 15 N -0.384 5.384 16 C 0.318 3.682 17 O -0.392 6.392 18 C -0.275 4.275 19 S 0.085 5.915 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.245 0.755 34 H 0.245 0.755 35 H 0.176 0.824 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.232 0.768 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.379 0.169 27.476 29.372 hybrid contribution -0.357 1.424 -0.172 1.478 sum 10.022 1.593 27.305 29.129 Atomic orbital electron populations 1.21768 0.93256 1.02837 1.02486 1.21770 0.97068 1.00341 0.93927 0.90123 1.21844 0.78209 1.01805 0.98943 1.48083 1.06899 1.57717 1.17991 1.19912 0.87712 0.79621 0.83945 1.90762 1.74866 1.45157 1.29589 1.20211 0.88627 0.78891 0.82578 1.43551 1.10734 1.57097 1.27039 1.90405 1.74674 1.42705 1.30537 1.23276 1.05002 0.97085 0.81766 1.22259 0.95557 1.01654 0.98821 1.20960 0.93109 0.97985 0.83510 0.89114 1.46020 1.68137 1.14485 1.09798 1.20272 0.77118 0.87006 0.83785 1.90697 1.48343 1.15983 1.84210 1.23284 1.04281 1.03622 0.96335 1.84785 1.86011 1.17282 1.03405 1.22318 1.49433 0.99401 0.95752 0.89415 1.24721 0.93403 0.98314 0.94921 1.69939 1.42916 1.36090 1.02750 0.86729 0.81190 0.84781 0.79116 1.19224 1.19957 1.15900 0.92130 0.91564 0.92030 0.90276 0.88214 0.75494 0.75467 0.82440 0.90822 0.89345 0.91513 0.76754 0.88576 0.88527 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.02 37.16 0.34 -0.75 16 2 C -0.11 -0.89 2.46 -90.50 -0.22 -1.11 16 3 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 4 C 0.11 0.92 5.71 -3.71 -0.02 0.90 16 5 N -0.57 -5.21 2.98 -173.54 -0.52 -5.73 16 6 C 0.51 4.74 7.76 -11.58 -0.09 4.65 16 7 O -0.53 -5.69 15.91 5.50 0.09 -5.60 16 8 C 0.52 4.20 8.07 -11.59 -0.09 4.11 16 9 N -0.82 -3.62 8.86 30.91 0.27 -3.35 16 10 O -0.51 -5.20 13.86 5.49 0.08 -5.13 16 11 C 0.05 0.48 6.20 -3.93 -0.02 0.45 16 12 C -0.14 -1.51 5.63 -26.83 -0.15 -1.66 16 13 C 0.15 1.58 1.88 -67.89 -0.13 1.45 16 14 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 15 N -0.73 -8.70 4.37 -53.77 -0.23 -8.93 16 16 C 0.53 9.00 7.81 -10.99 -0.09 8.92 16 17 O -0.52 -10.68 15.52 5.56 0.09 -10.60 16 18 C -0.12 -2.35 6.16 36.00 0.22 -2.12 16 19 S -0.14 -3.54 18.55 -107.50 -1.99 -5.53 16 20 C -0.52 -14.94 10.04 30.94 0.31 -14.63 16 21 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 22 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 23 N -0.88 -26.52 13.97 55.49 0.78 -25.74 16 24 Si 0.86 21.74 27.74 -169.99 -4.72 17.02 16 25 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 27 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.52 7.37 -51.93 -0.38 0.14 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.10 0.81 7.01 -51.93 -0.36 0.45 16 33 H 0.41 1.02 8.93 -40.82 -0.36 0.66 16 34 H 0.41 1.30 8.32 -40.82 -0.34 0.96 16 35 H 0.16 1.63 3.79 -56.98 -0.22 1.42 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.40 3.74 8.31 -40.82 -0.34 3.40 16 40 H 0.10 1.68 8.14 -51.91 -0.42 1.26 16 41 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 42 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 359.89 15.07 5.42 5.42 Total: -1.00 -35.52 359.89 -6.56 -42.08 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.78 Total: 3.19 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -0.04 Total: 2.88 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.30 Total: -43.75 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: 0.25 Total: -21.33 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.72 Total: 17.02 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.52 -6.56 -42.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073747604.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.337 kcal (2) G-P(sol) polarization free energy of solvation -35.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.38 seconds