Wall clock time and date at job start Tue Mar 31 2020 07:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.49823 * 2 1 4 4 C 1.53198 * 109.49740 * 239.94204 * 2 1 3 5 5 N 1.46926 * 108.77416 * 185.37661 * 4 2 1 6 6 C 1.34780 * 120.62827 * 233.58395 * 5 4 2 7 7 O 1.21277 * 120.00034 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99862 * 180.02562 * 6 5 4 9 9 S 1.81000 * 109.46971 * 180.02562 * 8 6 5 10 10 C 1.76203 * 99.99721 * 180.02562 * 9 8 6 11 11 H 1.08003 * 120.00420 * 359.97438 * 10 9 8 12 12 C 1.38801 * 119.99967 * 179.97438 * 10 9 8 13 13 N 1.31633 * 120.00137 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99939 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47101 * 89.99480 * 14 12 10 16 16 H 1.48496 * 109.47099 * 209.99699 * 14 12 10 17 17 H 1.48504 * 109.47005 * 329.99619 * 14 12 10 18 18 C 1.46920 * 118.73951 * 53.61367 * 5 4 2 19 19 C 1.53196 * 108.77435 * 306.38547 * 18 5 4 20 20 C 1.53037 * 109.31040 * 54.63686 * 19 18 5 21 21 H 1.09003 * 109.45936 * 178.62016 * 20 19 18 22 22 N 1.46501 * 109.46116 * 58.65634 * 20 19 18 23 23 C 1.34777 * 119.99710 * 84.99999 * 22 20 19 24 24 O 1.21351 * 120.00180 * 359.97438 * 23 22 20 25 25 C 1.49449 * 119.99535 * 179.97438 * 23 22 20 26 26 N 1.34772 * 119.99822 * 179.97438 * 25 23 22 27 27 O 1.21351 * 120.00285 * 0.02562 * 25 23 22 28 28 H 1.09002 * 109.46884 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46746 * 300.05564 * 1 2 3 30 30 H 1.08994 * 109.47535 * 60.05856 * 1 2 3 31 31 H 1.08998 * 109.58454 * 65.59195 * 4 2 1 32 32 H 1.08996 * 109.70366 * 305.23575 * 4 2 1 33 33 H 1.08996 * 109.47093 * 300.00420 * 8 6 5 34 34 H 1.09003 * 109.47280 * 60.00303 * 8 6 5 35 35 H 0.96998 * 119.99526 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.58534 * 186.60110 * 18 5 4 37 37 H 1.08995 * 109.70522 * 66.24252 * 18 5 4 38 38 H 1.08999 * 109.50112 * 174.59220 * 19 18 5 39 39 H 1.09004 * 109.49641 * 294.68461 * 19 18 5 40 40 H 0.96998 * 119.99577 * 264.99890 * 22 20 19 41 41 H 0.97006 * 120.00475 * 0.02562 * 26 25 23 42 42 H 0.97002 * 120.00729 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7233 -1.2499 5 7 3.5047 -0.8279 -1.1704 6 6 4.2806 -0.3846 -2.1793 7 8 3.7721 0.1067 -3.1646 8 6 5.7802 -0.4994 -2.0830 9 16 6.5346 0.1785 -3.5821 10 6 8.2378 -0.0776 -3.2101 11 1 8.5233 -0.5353 -2.2745 12 6 9.2125 0.3090 -4.1195 13 7 10.4849 0.1182 -3.8414 14 14 8.7188 1.1014 -5.7374 15 1 8.6471 2.5747 -5.5655 16 1 9.7265 0.7728 -6.7774 17 1 7.3900 0.5867 -6.1555 18 6 4.1060 -1.4254 0.0296 19 6 3.5716 -0.6942 1.2652 20 6 2.0416 -0.7231 1.2480 21 1 1.6590 -0.2248 2.1387 22 7 1.5798 -2.1133 1.2303 23 6 1.4511 -2.7953 2.3857 24 8 1.7181 -2.2580 3.4405 25 6 0.9794 -4.2133 2.3676 26 7 0.8512 -4.8955 3.5229 27 8 0.7128 -4.7508 1.3128 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5147 0.8895 30 1 -0.3634 0.5129 -0.8904 31 1 1.7632 -0.1574 -2.1390 32 1 1.6059 -1.7212 -1.3010 33 1 6.1323 0.0584 -1.2153 34 1 6.0583 -1.5481 -1.9781 35 1 11.1660 0.3887 -4.4768 36 1 5.1902 -1.3228 -0.0153 37 1 3.8410 -2.4811 0.0867 38 1 3.9348 -1.1888 2.1661 39 1 3.9162 0.3398 1.2534 40 1 1.3667 -2.5428 0.3871 41 1 1.0646 -4.4661 4.3661 42 1 0.5454 -5.8160 3.5113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074172661.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:33 Heat of formation + Delta-G solvation = -109.397938 kcal Electronic energy + Delta-G solvation = -26152.864751 eV Core-core repulsion = 22259.045553 eV Total energy + Delta-G solvation = -3893.819198 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 4.96 seconds Orbital eigenvalues (eV) -41.31853 -40.13485 -38.84234 -37.72155 -34.91939 -34.11846 -33.26949 -32.44975 -31.44661 -29.73992 -27.01549 -25.92774 -25.54379 -24.73911 -22.67684 -21.12340 -20.37277 -19.28724 -19.02848 -17.73704 -17.45410 -16.94962 -16.55605 -16.30300 -15.93221 -15.84321 -15.19947 -14.98391 -14.87821 -14.35834 -14.34426 -14.02080 -13.86513 -13.73336 -13.32981 -13.09265 -12.81369 -12.44829 -12.22408 -12.18919 -12.07035 -11.77261 -11.36656 -11.33571 -11.25668 -11.01825 -10.87775 -10.59908 -10.37275 -10.11245 -9.86992 -9.64583 -9.50430 -9.01532 -8.66234 -8.50733 -6.93560 -6.30006 -4.01973 0.98956 2.05934 2.66127 2.79123 2.87979 3.14592 3.32283 3.42868 3.49670 3.56751 4.10824 4.18614 4.31905 4.38443 4.48451 4.61652 4.71141 4.91107 4.94570 5.09066 5.10733 5.13796 5.24530 5.35634 5.42042 5.53562 5.57602 5.68377 5.72214 5.75942 5.80967 5.83561 5.95550 5.97269 6.03304 6.43463 6.47072 6.85759 7.34835 7.38581 7.57284 7.93018 8.38177 8.40356 9.16176 10.79221 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.021092 B = 0.002681 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.227798 B =10439.794677 C =11034.151575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 H 0.097 0.903 4 C 0.114 3.886 5 N -0.618 5.618 6 C 0.535 3.465 7 O -0.517 6.517 8 C -0.122 4.122 9 S -0.142 6.142 10 C -0.521 4.521 11 H 0.088 0.912 12 C 0.095 3.905 13 N -0.880 5.880 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 C 0.106 3.894 19 C -0.148 4.148 20 C 0.149 3.851 21 H 0.098 0.902 22 N -0.690 5.690 23 C 0.507 3.493 24 O -0.519 6.519 25 C 0.512 3.488 26 N -0.823 5.823 27 O -0.520 6.520 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.271 0.729 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.412 0.588 41 H 0.414 0.586 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.766 -6.340 16.466 28.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.134 4.134 3 H 0.115 0.885 4 C -0.009 4.009 5 N -0.354 5.354 6 C 0.323 3.677 7 O -0.392 6.392 8 C -0.272 4.272 9 S 0.084 5.916 10 C -0.668 4.668 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.517 5.517 14 Si 0.682 3.318 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 C -0.017 4.017 19 C -0.187 4.187 20 C 0.045 3.955 21 H 0.116 0.884 22 N -0.344 5.344 23 C 0.287 3.713 24 O -0.395 6.395 25 C 0.291 3.709 26 N -0.389 5.389 27 O -0.395 6.395 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.250 0.750 41 H 0.245 0.755 42 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -22.241 -5.381 14.908 27.310 hybrid contribution 0.661 -0.734 0.652 1.184 sum -21.580 -6.115 15.560 27.298 Atomic orbital electron populations 1.21779 0.93648 1.02350 1.02634 1.21834 0.96707 1.00927 0.93913 0.88523 1.21582 0.80065 1.00365 0.98871 1.48065 1.06024 1.62642 1.18707 1.20306 0.88808 0.76627 0.81927 1.90690 1.74975 1.43090 1.30399 1.23314 0.93235 1.05539 1.05160 1.84797 1.04891 1.80730 1.21185 1.22302 0.88371 1.47411 1.08737 0.89404 1.24715 0.94043 0.94328 0.98232 1.69941 0.99483 1.45732 1.36531 0.86733 0.80811 0.80901 0.83391 1.19216 1.19948 1.15912 1.21716 0.99465 0.96852 0.83668 1.22346 0.94753 1.02876 0.98716 1.21158 0.94274 0.80422 0.99602 0.88406 1.45959 1.65332 1.13883 1.09236 1.20036 0.79336 0.87108 0.84801 1.90780 1.48861 1.69562 1.30288 1.20180 0.78495 0.87613 0.84653 1.43535 1.68722 1.17347 1.09288 1.90847 1.48343 1.69930 1.30375 0.92391 0.92030 0.91664 0.88133 0.91919 0.88504 0.88509 0.91931 0.88736 0.91447 0.89788 0.89596 0.74975 0.75530 0.75635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.06 37.16 0.34 -0.61 16 2 C -0.11 -0.90 2.67 -90.50 -0.24 -1.14 16 3 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 4 C 0.11 1.18 5.41 -3.71 -0.02 1.16 16 5 N -0.62 -7.79 2.97 -172.77 -0.51 -8.31 16 6 C 0.54 9.34 7.72 -10.98 -0.08 9.26 16 7 O -0.52 -10.86 15.27 5.56 0.08 -10.77 16 8 C -0.12 -2.33 4.50 36.01 0.16 -2.17 16 9 S -0.14 -3.58 18.55 -107.50 -1.99 -5.58 16 10 C -0.52 -14.88 10.04 30.94 0.31 -14.57 16 11 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 12 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 13 N -0.88 -26.49 13.97 55.49 0.78 -25.71 16 14 Si 0.86 21.72 27.74 -169.99 -4.72 17.00 16 15 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 18 C 0.11 1.08 6.08 -3.71 -0.02 1.06 16 19 C -0.15 -1.27 5.77 -26.61 -0.15 -1.42 16 20 C 0.15 1.17 2.21 -67.89 -0.15 1.02 16 21 H 0.10 0.79 7.58 -51.93 -0.39 0.39 16 22 N -0.69 -5.38 3.59 -54.20 -0.19 -5.58 16 23 C 0.51 4.37 7.85 -11.59 -0.09 4.28 16 24 O -0.52 -5.33 16.14 5.50 0.09 -5.24 16 25 C 0.51 4.19 8.16 -11.59 -0.09 4.10 16 26 N -0.82 -3.91 8.87 30.90 0.27 -3.63 16 27 O -0.52 -5.71 17.31 5.50 0.10 -5.61 16 28 H 0.06 0.37 7.54 -51.93 -0.39 -0.02 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.10 1.22 7.00 -51.93 -0.36 0.86 16 32 H 0.06 0.56 6.65 -51.93 -0.35 0.22 16 33 H 0.10 1.72 7.69 -51.92 -0.40 1.32 16 34 H 0.10 1.74 7.94 -51.92 -0.41 1.33 16 35 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.09 1.01 5.93 -51.93 -0.31 0.70 16 37 H 0.07 0.64 7.74 -51.93 -0.40 0.24 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.41 3.20 6.21 -40.82 -0.25 2.95 16 41 H 0.41 1.42 8.30 -40.82 -0.34 1.08 16 42 H 0.41 1.23 8.93 -40.82 -0.36 0.86 16 LS Contribution 358.91 15.07 5.41 5.41 Total: -1.00 -35.72 358.91 -6.50 -42.22 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.66 Total: 2.15 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -0.14 Total: 3.65 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.34 Total: -43.23 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: 0.27 Total: -21.62 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.72 Total: 17.00 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.72 -6.50 -42.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074172661.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.183 kcal (2) G-P(sol) polarization free energy of solvation -35.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.96 seconds