Wall clock time and date at job start Tue Mar 31 2020 07:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.49823 * 2 1 4 4 C 1.53198 * 109.49740 * 239.94204 * 2 1 3 5 5 N 1.46926 * 108.77416 * 185.37661 * 4 2 1 6 6 C 1.34780 * 120.62827 * 233.58395 * 5 4 2 7 7 O 1.21277 * 120.00034 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99862 * 180.02562 * 6 5 4 9 9 S 1.81000 * 109.46971 * 180.02562 * 8 6 5 10 10 C 1.76203 * 99.99721 * 180.02562 * 9 8 6 11 11 H 1.08003 * 120.00420 * 359.97438 * 10 9 8 12 12 C 1.38801 * 119.99967 * 179.97438 * 10 9 8 13 13 N 1.31633 * 120.00137 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99939 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47101 * 89.99480 * 14 12 10 16 16 H 1.48496 * 109.47099 * 209.99699 * 14 12 10 17 17 H 1.48504 * 109.47005 * 329.99619 * 14 12 10 18 18 C 1.46920 * 118.73951 * 53.61367 * 5 4 2 19 19 C 1.53196 * 108.77435 * 306.38547 * 18 5 4 20 20 C 1.53037 * 109.31040 * 54.63686 * 19 18 5 21 21 H 1.09003 * 109.45936 * 178.62016 * 20 19 18 22 22 N 1.46501 * 109.46116 * 58.65634 * 20 19 18 23 23 C 1.34777 * 119.99710 * 84.99999 * 22 20 19 24 24 O 1.21351 * 120.00180 * 359.97438 * 23 22 20 25 25 C 1.49449 * 119.99535 * 179.97438 * 23 22 20 26 26 N 1.34772 * 119.99822 * 179.97438 * 25 23 22 27 27 O 1.21351 * 120.00285 * 0.02562 * 25 23 22 28 28 H 1.09002 * 109.46884 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46746 * 300.05564 * 1 2 3 30 30 H 1.08994 * 109.47535 * 60.05856 * 1 2 3 31 31 H 1.08998 * 109.58454 * 65.59195 * 4 2 1 32 32 H 1.08996 * 109.70366 * 305.23575 * 4 2 1 33 33 H 1.08996 * 109.47093 * 300.00420 * 8 6 5 34 34 H 1.09003 * 109.47280 * 60.00303 * 8 6 5 35 35 H 0.96998 * 119.99526 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.58534 * 186.60110 * 18 5 4 37 37 H 1.08995 * 109.70522 * 66.24252 * 18 5 4 38 38 H 1.08999 * 109.50112 * 174.59220 * 19 18 5 39 39 H 1.09004 * 109.49641 * 294.68461 * 19 18 5 40 40 H 0.96998 * 119.99577 * 264.99890 * 22 20 19 41 41 H 0.97006 * 120.00475 * 0.02562 * 26 25 23 42 42 H 0.97002 * 120.00729 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7233 -1.2499 5 7 3.5047 -0.8279 -1.1704 6 6 4.2806 -0.3846 -2.1793 7 8 3.7721 0.1067 -3.1646 8 6 5.7802 -0.4994 -2.0830 9 16 6.5346 0.1785 -3.5821 10 6 8.2378 -0.0776 -3.2101 11 1 8.5233 -0.5353 -2.2745 12 6 9.2125 0.3090 -4.1195 13 7 10.4849 0.1182 -3.8414 14 14 8.7188 1.1014 -5.7374 15 1 8.6471 2.5747 -5.5655 16 1 9.7265 0.7728 -6.7774 17 1 7.3900 0.5867 -6.1555 18 6 4.1060 -1.4254 0.0296 19 6 3.5716 -0.6942 1.2652 20 6 2.0416 -0.7231 1.2480 21 1 1.6590 -0.2248 2.1387 22 7 1.5798 -2.1133 1.2303 23 6 1.4511 -2.7953 2.3857 24 8 1.7181 -2.2580 3.4405 25 6 0.9794 -4.2133 2.3676 26 7 0.8512 -4.8955 3.5229 27 8 0.7128 -4.7508 1.3128 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5147 0.8895 30 1 -0.3634 0.5129 -0.8904 31 1 1.7632 -0.1574 -2.1390 32 1 1.6059 -1.7212 -1.3010 33 1 6.1323 0.0584 -1.2153 34 1 6.0583 -1.5481 -1.9781 35 1 11.1660 0.3887 -4.4768 36 1 5.1902 -1.3228 -0.0153 37 1 3.8410 -2.4811 0.0867 38 1 3.9348 -1.1888 2.1661 39 1 3.9162 0.3398 1.2534 40 1 1.3667 -2.5428 0.3871 41 1 1.0646 -4.4661 4.3661 42 1 0.5454 -5.8160 3.5113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074172661.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:27 Heat of formation + Delta-G solvation = -137.911977 kcal Electronic energy + Delta-G solvation = -26154.101212 eV Core-core repulsion = 22259.045553 eV Total energy + Delta-G solvation = -3895.055659 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 5.23 seconds Orbital eigenvalues (eV) -42.06879 -41.09243 -39.71141 -38.65960 -35.84148 -34.76549 -34.67245 -33.97039 -32.27399 -31.12545 -27.92769 -27.69989 -26.68173 -25.54986 -23.43995 -21.77236 -21.38916 -20.23100 -19.81264 -19.48468 -18.25610 -18.07434 -17.27532 -17.17818 -16.99286 -16.90911 -16.85409 -16.16048 -15.77261 -15.59078 -15.17145 -15.06452 -14.92715 -14.89821 -14.49912 -14.43810 -13.90090 -13.61627 -13.36224 -13.13754 -13.00878 -12.90733 -12.87623 -12.67870 -12.50867 -12.13611 -12.00755 -11.86991 -11.61563 -11.17347 -10.94730 -10.89451 -10.80200 -10.53269 -10.30954 -9.72901 -9.00391 -8.51845 -6.22738 0.34041 0.96964 1.31230 1.44092 1.46129 1.50461 1.53746 2.02322 2.14335 2.24772 2.67301 2.85855 2.86507 3.39544 3.59501 3.61196 3.69303 3.78986 3.94812 4.15413 4.17198 4.26286 4.37124 4.42213 4.56690 4.65790 4.74539 4.76244 4.87507 4.97254 5.06683 5.10740 5.24423 5.33708 5.49350 5.54704 5.70490 5.91974 6.11091 6.18220 6.27509 6.76441 6.93392 7.02224 7.05513 8.60578 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.021092 B = 0.002681 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.227798 B =10439.794677 C =11034.151575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 H 0.094 0.906 4 C 0.111 3.889 5 N -0.603 5.603 6 C 0.537 3.463 7 O -0.559 6.559 8 C -0.108 4.108 9 S -0.175 6.175 10 C -0.527 4.527 11 H 0.062 0.938 12 C 0.045 3.955 13 N -0.917 5.917 14 Si 0.914 3.086 15 H -0.262 1.262 16 H -0.260 1.260 17 H -0.237 1.237 18 C 0.101 3.899 19 C -0.142 4.142 20 C 0.155 3.845 21 H 0.104 0.896 22 N -0.684 5.684 23 C 0.510 3.490 24 O -0.535 6.535 25 C 0.512 3.488 26 N -0.802 5.802 27 O -0.552 6.552 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.277 0.723 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.414 0.586 41 H 0.423 0.577 42 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.526 -6.626 17.605 30.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 H 0.112 0.888 4 C -0.011 4.011 5 N -0.337 5.337 6 C 0.324 3.676 7 O -0.437 6.437 8 C -0.259 4.259 9 S 0.052 5.948 10 C -0.675 4.675 11 H 0.080 0.920 12 C -0.160 4.160 13 N -0.555 5.555 14 Si 0.736 3.264 15 H -0.186 1.186 16 H -0.184 1.184 17 H -0.160 1.160 18 C -0.021 4.021 19 C -0.181 4.181 20 C 0.051 3.949 21 H 0.122 0.878 22 N -0.338 5.338 23 C 0.291 3.709 24 O -0.413 6.413 25 C 0.290 3.710 26 N -0.369 5.369 27 O -0.430 6.430 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.252 0.748 41 H 0.255 0.745 42 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -24.020 -5.699 16.124 29.486 hybrid contribution 1.134 -0.738 0.505 1.445 sum -22.886 -6.437 16.629 29.013 Atomic orbital electron populations 1.21748 0.92230 1.02793 1.03182 1.21737 0.97717 1.00322 0.92488 0.88807 1.21790 0.78317 1.01527 0.99516 1.48019 1.06865 1.60795 1.17979 1.19959 0.88156 0.76929 0.82512 1.90677 1.75315 1.45476 1.32252 1.23291 0.94476 1.05920 1.02173 1.84704 1.02909 1.81670 1.25521 1.22442 0.90549 1.46722 1.07765 0.91976 1.25564 0.94061 0.94898 1.01479 1.70017 1.00525 1.46965 1.38023 0.85869 0.80630 0.80109 0.79782 1.18644 1.18401 1.16049 1.21923 0.99308 0.97668 0.83208 1.22298 0.95224 1.02762 0.97776 1.21116 0.93691 0.80476 0.99659 0.87836 1.45925 1.64894 1.13770 1.09199 1.20107 0.78957 0.87260 0.84620 1.90779 1.49739 1.69931 1.30801 1.20134 0.78416 0.87456 0.84957 1.43453 1.66984 1.17677 1.08761 1.90841 1.50225 1.70433 1.31530 0.91997 0.91063 0.91579 0.89864 0.90136 0.87008 0.87295 0.91365 0.89122 0.90155 0.89252 0.89437 0.74778 0.74502 0.74407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.06 71.98 0.65 -0.86 16 2 C -0.10 -1.41 2.67 -10.71 -0.03 -1.43 16 3 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 4 C 0.11 2.10 5.41 86.36 0.47 2.57 16 5 N -0.60 -14.30 2.97 -818.92 -2.43 -16.73 16 6 C 0.54 18.34 7.72 87.66 0.68 19.02 16 7 O -0.56 -23.41 15.27 -3.02 -0.05 -23.46 16 8 C -0.11 -4.06 4.50 71.24 0.32 -3.74 16 9 S -0.17 -8.80 18.55 -56.49 -1.05 -9.84 16 10 C -0.53 -30.58 10.04 67.95 0.68 -29.89 16 11 H 0.06 3.80 8.03 -2.91 -0.02 3.77 16 12 C 0.05 2.66 5.50 84.86 0.47 3.12 16 13 N -0.92 -55.83 13.97 21.65 0.30 -55.53 16 14 Si 0.91 44.95 27.74 68.60 1.90 46.85 16 15 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 16 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 17 H -0.24 -11.61 6.74 99.48 0.67 -10.94 16 18 C 0.10 1.86 6.08 86.37 0.53 2.39 16 19 C -0.14 -2.10 5.77 30.67 0.18 -1.93 16 20 C 0.15 2.04 2.21 45.02 0.10 2.14 16 21 H 0.10 1.37 7.58 -2.39 -0.02 1.35 16 22 N -0.68 -9.11 3.59 -443.74 -1.59 -10.70 16 23 C 0.51 7.70 7.85 87.27 0.69 8.38 16 24 O -0.54 -9.77 16.14 -3.25 -0.05 -9.82 16 25 C 0.51 7.43 8.16 87.27 0.71 8.14 16 26 N -0.80 -5.92 8.87 -174.50 -1.55 -7.47 16 27 O -0.55 -11.31 17.31 -3.25 -0.06 -11.37 16 28 H 0.06 0.63 7.54 -2.39 -0.02 0.61 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 1.96 7.00 -2.39 -0.02 1.94 16 32 H 0.08 1.28 6.65 -2.39 -0.02 1.26 16 33 H 0.11 3.86 7.69 -2.40 -0.02 3.85 16 34 H 0.11 3.83 7.94 -2.39 -0.02 3.81 16 35 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 36 H 0.09 1.77 5.93 -2.39 -0.01 1.76 16 37 H 0.08 1.34 7.74 -2.39 -0.02 1.32 16 38 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.41 5.48 6.21 -92.71 -0.58 4.91 16 41 H 0.42 1.93 8.30 -92.70 -0.77 1.16 16 42 H 0.42 1.62 8.93 -92.71 -0.83 0.79 16 Total: -1.00 -77.31 358.91 -0.25 -77.56 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -1.12 Total: 12.60 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 5.44 Total: 7.92 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -5.27 Total: -90.43 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -0.15 Total: -44.65 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.90 Total: 46.85 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.05 Total: -9.84 kcal Total: -77.31 -0.25 -77.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074172661.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.352 kcal (2) G-P(sol) polarization free energy of solvation -77.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.23 seconds