Wall clock time and date at job start Tue Mar 31 2020 07:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.50062 * 2 1 4 4 C 1.53192 * 109.52478 * 120.08054 * 2 1 3 5 5 N 1.46929 * 108.77742 * 174.60040 * 4 2 1 6 6 C 1.34775 * 120.62959 * 126.41087 * 5 4 2 7 7 O 1.21281 * 120.00014 * 0.02562 * 6 5 4 8 8 C 1.50694 * 120.00038 * 179.97438 * 6 5 4 9 9 S 1.81001 * 109.47327 * 180.02562 * 8 6 5 10 10 C 1.76198 * 99.99984 * 180.02562 * 9 8 6 11 11 H 1.08001 * 120.00499 * 0.02562 * 10 9 8 12 12 C 1.38804 * 119.99744 * 179.97438 * 10 9 8 13 13 N 1.31620 * 120.00162 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99787 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.46976 * 89.99996 * 14 12 10 16 16 H 1.48500 * 109.46633 * 210.00102 * 14 12 10 17 17 H 1.48493 * 109.47004 * 329.99932 * 14 12 10 18 18 C 1.46924 * 118.73765 * 306.39219 * 5 4 2 19 19 C 1.53189 * 108.77876 * 53.60862 * 18 5 4 20 20 C 1.53042 * 109.31329 * 305.36500 * 19 18 5 21 21 H 1.08996 * 109.45634 * 181.37695 * 20 19 18 22 22 N 1.46504 * 109.45954 * 301.34425 * 20 19 18 23 23 C 1.34777 * 119.99858 * 275.06968 * 22 20 19 24 24 O 1.21353 * 119.99795 * 359.97438 * 23 22 20 25 25 C 1.49453 * 119.99937 * 180.27545 * 23 22 20 26 26 N 1.34775 * 119.99799 * 179.72511 * 25 23 22 27 27 O 1.21343 * 119.99742 * 359.71852 * 25 23 22 28 28 H 1.09002 * 109.46862 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47013 * 300.06686 * 1 2 3 30 30 H 1.08999 * 109.46504 * 60.06493 * 1 2 3 31 31 H 1.08996 * 109.58722 * 294.38991 * 4 2 1 32 32 H 1.09002 * 109.58635 * 54.67383 * 4 2 1 33 33 H 1.08999 * 109.47611 * 300.00469 * 8 6 5 34 34 H 1.09003 * 109.47049 * 60.00092 * 8 6 5 35 35 H 0.96999 * 120.00353 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.58634 * 173.39422 * 18 5 4 37 37 H 1.08996 * 109.58931 * 293.67774 * 18 5 4 38 38 H 1.08994 * 109.50237 * 185.41122 * 19 18 5 39 39 H 1.09007 * 109.49755 * 65.30819 * 19 18 5 40 40 H 0.97000 * 119.99825 * 95.06062 * 22 20 19 41 41 H 0.97000 * 119.99929 * 359.97438 * 26 25 23 42 42 H 0.96995 * 119.99878 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0420 -0.7237 1.2494 5 7 3.5053 -0.8284 1.1690 6 6 4.2819 -0.3853 2.1775 7 8 3.7739 0.1050 3.1636 8 6 5.7813 -0.5003 2.0803 9 16 6.5367 0.1759 3.5798 10 6 8.2397 -0.0787 3.2060 11 1 8.5247 -0.5349 2.2695 12 6 9.2150 0.3082 4.1147 13 7 8.8677 0.8647 5.2558 14 14 11.0205 0.0389 3.7181 15 1 11.5557 1.2316 3.0139 16 1 11.7776 -0.1734 4.9779 17 1 11.1632 -1.1555 2.8475 18 6 4.1059 -1.4256 -0.0316 19 6 3.5709 -0.6941 -1.2666 20 6 2.0409 -0.7228 -1.2486 21 1 1.6579 -0.2242 -2.1390 22 7 1.5789 -2.1130 -1.2310 23 6 1.4509 -2.7952 -2.3863 24 8 1.7177 -2.2577 -3.4411 25 6 0.9738 -4.2114 -2.3689 26 7 0.8404 -4.8918 -3.5246 27 8 0.7066 -4.7486 -1.3142 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5148 0.8893 30 1 -0.3632 0.5128 -0.8906 31 1 1.7645 -0.1580 2.1388 32 1 1.6045 -1.7208 1.2992 33 1 6.0594 -1.5489 1.9750 34 1 6.1330 0.0577 1.2125 35 1 9.5492 1.1347 5.8910 36 1 5.1902 -1.3230 0.0126 37 1 3.8407 -2.4814 -0.0863 38 1 3.9334 -1.1885 -2.1678 39 1 3.9154 0.3400 -1.2547 40 1 1.3654 -2.5425 -0.3879 41 1 1.0537 -4.4621 -4.3677 42 1 0.5311 -5.8110 -3.5133 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074172662.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:48 Heat of formation + Delta-G solvation = -109.623884 kcal Electronic energy + Delta-G solvation = -26111.144222 eV Core-core repulsion = 22217.315227 eV Total energy + Delta-G solvation = -3893.828996 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.28697 -40.07302 -38.79456 -37.65356 -34.86243 -34.08600 -33.22936 -32.43929 -31.39535 -29.59815 -26.96872 -25.88502 -25.40245 -24.67631 -22.62971 -21.09470 -20.29968 -19.25445 -18.96625 -17.72561 -17.43706 -16.86312 -16.50619 -16.27619 -15.87965 -15.78132 -15.12555 -14.85454 -14.81092 -14.32378 -14.30092 -14.00961 -13.90578 -13.69409 -13.21488 -13.01000 -12.67150 -12.34814 -12.18935 -12.11163 -11.98159 -11.69751 -11.30889 -11.28165 -11.06945 -11.02820 -10.83645 -10.75142 -10.36289 -10.09493 -9.81754 -9.60796 -9.38954 -9.07561 -8.57523 -8.23977 -6.51371 -6.22513 -3.93242 1.00527 2.07874 2.80643 2.87402 3.00852 3.21795 3.24866 3.29640 3.44603 3.56750 4.13280 4.19136 4.22440 4.42994 4.54187 4.75013 4.84119 4.96576 5.11977 5.12715 5.15073 5.25259 5.39800 5.44166 5.54383 5.58221 5.62846 5.74321 5.79158 5.84566 5.87250 5.89174 5.98952 6.05564 6.09848 6.44755 6.56119 6.87918 7.36619 7.49060 7.58739 7.58891 8.34214 8.51483 9.22840 10.84909 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018579 B = 0.002663 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.702393 B =10511.202360 C =11286.731765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 H 0.096 0.904 4 C 0.114 3.886 5 N -0.620 5.620 6 C 0.537 3.463 7 O -0.515 6.515 8 C -0.151 4.151 9 S -0.061 6.061 10 C -0.535 4.535 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.108 3.892 19 C -0.148 4.148 20 C 0.150 3.850 21 H 0.097 0.903 22 N -0.689 5.689 23 C 0.507 3.493 24 O -0.520 6.520 25 C 0.512 3.488 26 N -0.823 5.823 27 O -0.520 6.520 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.268 0.732 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.413 0.587 41 H 0.414 0.586 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.696 -7.818 -19.386 27.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.134 4.134 3 H 0.115 0.885 4 C -0.009 4.009 5 N -0.357 5.357 6 C 0.325 3.675 7 O -0.389 6.389 8 C -0.302 4.302 9 S 0.166 5.834 10 C -0.683 4.683 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 C -0.016 4.016 19 C -0.187 4.187 20 C 0.046 3.954 21 H 0.115 0.885 22 N -0.343 5.343 23 C 0.287 3.713 24 O -0.396 6.396 25 C 0.291 3.709 26 N -0.389 5.389 27 O -0.395 6.395 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.250 0.750 41 H 0.245 0.755 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -18.307 -6.797 -17.699 26.355 hybrid contribution 1.680 -1.232 -1.552 2.597 sum -16.628 -8.029 -19.250 26.674 Atomic orbital electron populations 1.21779 0.93687 1.02317 1.02618 1.21839 0.96676 1.00947 0.93951 0.88528 1.21561 0.80242 1.00265 0.98825 1.48099 1.05934 1.62870 1.18751 1.20339 0.88855 0.76509 0.81824 1.90694 1.75005 1.42913 1.30281 1.23557 0.93641 1.05337 1.07619 1.85403 1.02269 1.78993 1.16740 1.22852 0.91177 1.47223 1.07065 0.90957 1.24990 0.99582 0.94545 0.94451 1.70011 1.34158 1.38370 1.07730 0.86170 0.82690 0.78690 0.77970 1.20269 1.20749 1.19687 1.21683 0.99443 0.96720 0.83727 1.22343 0.94771 1.02849 0.98708 1.21162 0.94279 0.80389 0.99609 0.88456 1.45966 1.65253 1.13886 1.09241 1.20035 0.79364 0.87093 0.84812 1.90777 1.48986 1.69518 1.30301 1.20186 0.78519 0.87596 0.84647 1.43532 1.68636 1.17495 1.09259 1.90846 1.48391 1.69824 1.30394 0.92420 0.91629 0.92084 0.88113 0.92034 0.89276 0.89229 0.92171 0.88841 0.91619 0.89906 0.89628 0.74955 0.75545 0.75652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.06 37.16 0.34 -0.68 16 2 C -0.11 -0.96 2.67 -90.49 -0.24 -1.20 16 3 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.11 1.25 5.42 -3.71 -0.02 1.23 16 5 N -0.62 -8.26 2.97 -172.77 -0.51 -8.78 16 6 C 0.54 9.90 7.72 -10.99 -0.08 9.81 16 7 O -0.51 -11.45 15.28 5.56 0.08 -11.36 16 8 C -0.15 -3.02 4.50 36.00 0.16 -2.86 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.53 -15.13 9.50 30.94 0.29 -14.84 16 11 H 0.07 1.93 7.80 -52.49 -0.41 1.53 16 12 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 14 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 C 0.11 1.15 6.08 -3.71 -0.02 1.13 16 19 C -0.15 -1.32 5.77 -26.61 -0.15 -1.47 16 20 C 0.15 1.23 2.21 -67.88 -0.15 1.08 16 21 H 0.10 0.81 7.58 -51.93 -0.39 0.42 16 22 N -0.69 -5.60 3.60 -54.19 -0.19 -5.80 16 23 C 0.51 4.48 7.85 -11.58 -0.09 4.39 16 24 O -0.52 -5.42 16.14 5.49 0.09 -5.34 16 25 C 0.51 4.28 8.16 -11.58 -0.09 4.19 16 26 N -0.82 -4.00 8.87 30.90 0.27 -3.73 16 27 O -0.52 -5.81 17.31 5.50 0.10 -5.71 16 28 H 0.06 0.39 7.54 -51.93 -0.39 0.00 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 1.30 7.01 -51.93 -0.36 0.94 16 32 H 0.06 0.59 6.65 -51.93 -0.35 0.25 16 33 H 0.09 1.67 7.94 -51.92 -0.41 1.25 16 34 H 0.09 1.65 7.69 -51.92 -0.40 1.25 16 35 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.09 1.04 5.93 -51.93 -0.31 0.73 16 37 H 0.07 0.66 7.74 -51.93 -0.40 0.25 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.41 3.36 6.20 -40.82 -0.25 3.11 16 41 H 0.41 1.46 8.30 -40.82 -0.34 1.12 16 42 H 0.41 1.27 8.93 -40.82 -0.36 0.90 16 LS Contribution 361.60 15.07 5.45 5.45 Total: -1.00 -36.05 361.60 -7.01 -43.06 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.63 Total: 2.32 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -0.16 Total: 2.78 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.30 Total: -43.65 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: 0.27 Total: -22.41 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.05 -7.01 -43.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074172662.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.563 kcal (2) G-P(sol) polarization free energy of solvation -36.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds