Wall clock time and date at job start Tue Mar 31 2020 07:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.50062 * 2 1 4 4 C 1.53192 * 109.52478 * 120.08054 * 2 1 3 5 5 N 1.46929 * 108.77742 * 174.60040 * 4 2 1 6 6 C 1.34775 * 120.62959 * 126.41087 * 5 4 2 7 7 O 1.21281 * 120.00014 * 0.02562 * 6 5 4 8 8 C 1.50694 * 120.00038 * 179.97438 * 6 5 4 9 9 S 1.81001 * 109.47327 * 180.02562 * 8 6 5 10 10 C 1.76198 * 99.99984 * 180.02562 * 9 8 6 11 11 H 1.08001 * 120.00499 * 0.02562 * 10 9 8 12 12 C 1.38804 * 119.99744 * 179.97438 * 10 9 8 13 13 N 1.31620 * 120.00162 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99787 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.46976 * 89.99996 * 14 12 10 16 16 H 1.48500 * 109.46633 * 210.00102 * 14 12 10 17 17 H 1.48493 * 109.47004 * 329.99932 * 14 12 10 18 18 C 1.46924 * 118.73765 * 306.39219 * 5 4 2 19 19 C 1.53189 * 108.77876 * 53.60862 * 18 5 4 20 20 C 1.53042 * 109.31329 * 305.36500 * 19 18 5 21 21 H 1.08996 * 109.45634 * 181.37695 * 20 19 18 22 22 N 1.46504 * 109.45954 * 301.34425 * 20 19 18 23 23 C 1.34777 * 119.99858 * 275.06968 * 22 20 19 24 24 O 1.21353 * 119.99795 * 359.97438 * 23 22 20 25 25 C 1.49453 * 119.99937 * 180.27545 * 23 22 20 26 26 N 1.34775 * 119.99799 * 179.72511 * 25 23 22 27 27 O 1.21343 * 119.99742 * 359.71852 * 25 23 22 28 28 H 1.09002 * 109.46862 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47013 * 300.06686 * 1 2 3 30 30 H 1.08999 * 109.46504 * 60.06493 * 1 2 3 31 31 H 1.08996 * 109.58722 * 294.38991 * 4 2 1 32 32 H 1.09002 * 109.58635 * 54.67383 * 4 2 1 33 33 H 1.08999 * 109.47611 * 300.00469 * 8 6 5 34 34 H 1.09003 * 109.47049 * 60.00092 * 8 6 5 35 35 H 0.96999 * 120.00353 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.58634 * 173.39422 * 18 5 4 37 37 H 1.08996 * 109.58931 * 293.67774 * 18 5 4 38 38 H 1.08994 * 109.50237 * 185.41122 * 19 18 5 39 39 H 1.09007 * 109.49755 * 65.30819 * 19 18 5 40 40 H 0.97000 * 119.99825 * 95.06062 * 22 20 19 41 41 H 0.97000 * 119.99929 * 359.97438 * 26 25 23 42 42 H 0.96995 * 119.99878 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0420 -0.7237 1.2494 5 7 3.5053 -0.8284 1.1690 6 6 4.2819 -0.3853 2.1775 7 8 3.7739 0.1050 3.1636 8 6 5.7813 -0.5003 2.0803 9 16 6.5367 0.1759 3.5798 10 6 8.2397 -0.0787 3.2060 11 1 8.5247 -0.5349 2.2695 12 6 9.2150 0.3082 4.1147 13 7 8.8677 0.8647 5.2558 14 14 11.0205 0.0389 3.7181 15 1 11.5557 1.2316 3.0139 16 1 11.7776 -0.1734 4.9779 17 1 11.1632 -1.1555 2.8475 18 6 4.1059 -1.4256 -0.0316 19 6 3.5709 -0.6941 -1.2666 20 6 2.0409 -0.7228 -1.2486 21 1 1.6579 -0.2242 -2.1390 22 7 1.5789 -2.1130 -1.2310 23 6 1.4509 -2.7952 -2.3863 24 8 1.7177 -2.2577 -3.4411 25 6 0.9738 -4.2114 -2.3689 26 7 0.8404 -4.8918 -3.5246 27 8 0.7066 -4.7486 -1.3142 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5148 0.8893 30 1 -0.3632 0.5128 -0.8906 31 1 1.7645 -0.1580 2.1388 32 1 1.6045 -1.7208 1.2992 33 1 6.0594 -1.5489 1.9750 34 1 6.1330 0.0577 1.2125 35 1 9.5492 1.1347 5.8910 36 1 5.1902 -1.3230 0.0126 37 1 3.8407 -2.4814 -0.0863 38 1 3.9334 -1.1885 -2.1678 39 1 3.9154 0.3400 -1.2547 40 1 1.3654 -2.5425 -0.3879 41 1 1.0537 -4.4621 -4.3677 42 1 0.5311 -5.8110 -3.5133 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074172662.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:43 Heat of formation + Delta-G solvation = -138.349997 kcal Electronic energy + Delta-G solvation = -26112.389880 eV Core-core repulsion = 22217.315227 eV Total energy + Delta-G solvation = -3895.074653 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 4.12 seconds Orbital eigenvalues (eV) -42.05814 -41.06747 -39.69715 -38.64329 -35.82168 -34.75938 -34.58606 -33.96408 -32.25940 -31.05047 -27.83156 -27.62080 -26.63545 -25.53358 -23.43086 -21.76458 -21.34746 -20.19569 -19.80627 -19.46172 -18.20290 -18.06515 -17.25529 -17.04165 -16.94639 -16.87419 -16.81959 -16.14117 -15.85970 -15.58108 -15.17588 -15.04928 -14.89833 -14.49254 -14.48503 -14.41637 -13.87153 -13.56212 -13.16730 -13.09990 -12.90318 -12.89241 -12.84391 -12.64676 -12.53952 -12.12488 -12.00870 -11.72923 -11.60486 -11.14345 -10.89661 -10.88992 -10.79882 -10.33045 -10.24617 -9.70281 -8.67190 -8.34664 -6.12806 0.34306 1.25012 1.42495 1.44316 1.46371 1.55657 1.56295 2.05894 2.14574 2.27290 2.85945 2.99567 3.23282 3.45286 3.60535 3.67599 3.73266 3.80464 3.96126 4.15670 4.23451 4.29083 4.38757 4.45636 4.56884 4.66329 4.74885 4.76541 4.88062 4.97292 5.06985 5.11020 5.24444 5.33865 5.41745 5.52220 5.55098 5.92206 6.19418 6.22182 6.28188 6.76514 7.02562 7.06668 7.11781 8.74555 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018579 B = 0.002663 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.702393 B =10511.202360 C =11286.731765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 H 0.092 0.908 4 C 0.110 3.890 5 N -0.605 5.605 6 C 0.535 3.465 7 O -0.562 6.562 8 C -0.125 4.125 9 S -0.151 6.151 10 C -0.545 4.545 11 H 0.082 0.918 12 C 0.013 3.987 13 N -0.911 5.911 14 Si 0.998 3.002 15 H -0.267 1.267 16 H -0.278 1.278 17 H -0.258 1.258 18 C 0.102 3.898 19 C -0.141 4.141 20 C 0.155 3.845 21 H 0.104 0.896 22 N -0.684 5.684 23 C 0.510 3.490 24 O -0.535 6.535 25 C 0.512 3.488 26 N -0.802 5.802 27 O -0.553 6.553 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.271 0.729 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.414 0.586 41 H 0.423 0.577 42 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.664 -8.970 -22.241 29.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 H 0.111 0.889 4 C -0.012 4.012 5 N -0.338 5.338 6 C 0.323 3.677 7 O -0.441 6.441 8 C -0.276 4.276 9 S 0.077 5.923 10 C -0.693 4.693 11 H 0.100 0.900 12 C -0.191 4.191 13 N -0.548 5.548 14 Si 0.820 3.180 15 H -0.193 1.193 16 H -0.204 1.204 17 H -0.182 1.182 18 C -0.020 4.020 19 C -0.180 4.180 20 C 0.051 3.949 21 H 0.122 0.878 22 N -0.338 5.338 23 C 0.291 3.709 24 O -0.412 6.412 25 C 0.290 3.710 26 N -0.368 5.368 27 O -0.430 6.430 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.252 0.748 41 H 0.255 0.745 42 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -18.307 -7.982 -20.642 28.722 hybrid contribution 1.541 -0.932 -0.791 1.967 sum -16.766 -8.914 -21.433 28.634 Atomic orbital electron populations 1.21749 0.92232 1.02797 1.03162 1.21737 0.97726 1.00280 0.92550 0.88948 1.21761 0.78568 1.01422 0.99449 1.48046 1.06745 1.60984 1.18069 1.20082 0.88456 0.76762 0.82386 1.90680 1.75469 1.45507 1.32418 1.23380 0.94527 1.05742 1.03964 1.85575 1.03814 1.80447 1.22501 1.23183 0.91340 1.47211 1.07526 0.89955 1.26124 1.05003 0.93928 0.94086 1.70177 1.35932 1.39627 1.09040 0.84958 0.75833 0.79222 0.78003 1.19265 1.20355 1.18187 1.21919 0.99393 0.97561 0.83129 1.22295 0.95159 1.02733 0.97803 1.21113 0.93774 0.80471 0.99538 0.87762 1.45933 1.64883 1.13748 1.09231 1.20106 0.78971 0.87253 0.84594 1.90776 1.49810 1.69877 1.30764 1.20131 0.78444 0.87417 0.84962 1.43445 1.66872 1.17820 1.08713 1.90841 1.50292 1.70337 1.31577 0.91960 0.91700 0.90973 0.90226 0.90195 0.87708 0.87357 0.91994 0.89014 0.90242 0.89077 0.89507 0.74817 0.74489 0.74406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.06 71.98 0.65 -1.03 16 2 C -0.10 -1.55 2.67 -10.71 -0.03 -1.58 16 3 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 4 C 0.11 2.31 5.42 86.36 0.47 2.78 16 5 N -0.60 -15.48 2.97 -818.93 -2.43 -17.91 16 6 C 0.54 19.83 7.72 87.66 0.68 20.50 16 7 O -0.56 -25.87 15.28 -3.03 -0.05 -25.91 16 8 C -0.13 -4.97 4.50 71.23 0.32 -4.65 16 9 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 10 C -0.54 -31.02 9.50 67.96 0.65 -30.38 16 11 H 0.08 4.35 7.80 -2.91 -0.02 4.32 16 12 C 0.01 0.76 5.49 84.86 0.47 1.23 16 13 N -0.91 -56.01 13.22 21.65 0.29 -55.72 16 14 Si 1.00 43.49 29.55 68.60 2.03 45.52 16 15 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 16 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 17 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 18 C 0.10 1.96 6.08 86.36 0.53 2.49 16 19 C -0.14 -2.16 5.77 30.67 0.18 -1.99 16 20 C 0.15 2.16 2.21 45.02 0.10 2.26 16 21 H 0.10 1.43 7.58 -2.39 -0.02 1.42 16 22 N -0.68 -9.53 3.60 -443.71 -1.60 -11.12 16 23 C 0.51 7.84 7.85 87.27 0.69 8.53 16 24 O -0.54 -9.81 16.14 -3.26 -0.05 -9.86 16 25 C 0.51 7.54 8.16 87.27 0.71 8.25 16 26 N -0.80 -5.95 8.87 -174.50 -1.55 -7.50 16 27 O -0.55 -11.51 17.31 -3.22 -0.06 -11.56 16 28 H 0.06 0.70 7.54 -2.39 -0.02 0.68 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 2.08 7.01 -2.39 -0.02 2.06 16 32 H 0.08 1.41 6.65 -2.39 -0.02 1.39 16 33 H 0.10 3.82 7.94 -2.40 -0.02 3.80 16 34 H 0.11 3.87 7.69 -2.39 -0.02 3.86 16 35 H 0.27 15.46 8.31 -92.71 -0.77 14.68 16 36 H 0.09 1.83 5.93 -2.39 -0.01 1.82 16 37 H 0.08 1.37 7.74 -2.39 -0.02 1.36 16 38 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.41 5.83 6.20 -92.71 -0.58 5.25 16 41 H 0.42 1.91 8.30 -92.71 -0.77 1.14 16 42 H 0.42 1.63 8.93 -92.71 -0.83 0.81 16 Total: -1.00 -80.12 361.60 -0.26 -80.39 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -1.08 Total: 16.82 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 5.40 Total: 6.41 kcal Atomic # 7 Polarization: -86.97 SS G_CDS: -5.29 Total: -92.26 kcal Atomic # 8 Polarization: -47.18 SS G_CDS: -0.15 Total: -47.34 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -80.12 -0.26 -80.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074172662.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.964 kcal (2) G-P(sol) polarization free energy of solvation -80.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.12 seconds