Wall clock time and date at job start Tue Mar 31 2020 07:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.52148 * 2 1 4 4 C 1.53184 * 109.48982 * 120.09119 * 2 1 3 5 5 N 1.46924 * 108.77010 * 174.59903 * 4 2 1 6 6 C 1.34776 * 120.63083 * 126.35875 * 5 4 2 7 7 O 1.21281 * 120.00048 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00116 * 180.02562 * 6 5 4 9 9 S 1.81005 * 109.47417 * 179.97438 * 8 6 5 10 10 C 1.76198 * 100.00037 * 179.97438 * 9 8 6 11 11 H 1.08006 * 119.99856 * 359.97438 * 10 9 8 12 12 C 1.38803 * 120.00003 * 180.02562 * 10 9 8 13 13 N 1.31626 * 119.99677 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 119.99711 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47555 * 90.00284 * 14 12 10 16 16 H 1.48510 * 109.46832 * 210.00117 * 14 12 10 17 17 H 1.48495 * 109.47220 * 329.99732 * 14 12 10 18 18 C 1.46922 * 118.73774 * 306.38698 * 5 4 2 19 19 C 1.53196 * 108.77848 * 53.60404 * 18 5 4 20 20 C 1.53038 * 109.31160 * 305.36583 * 19 18 5 21 21 H 1.09003 * 109.46053 * 301.35931 * 20 19 18 22 22 N 1.46494 * 109.46087 * 181.38195 * 20 19 18 23 23 C 1.34784 * 119.99635 * 84.97431 * 22 20 19 24 24 O 1.21346 * 119.99779 * 359.97438 * 23 22 20 25 25 C 1.49454 * 119.99872 * 179.97438 * 23 22 20 26 26 N 1.34774 * 119.99866 * 179.97438 * 25 23 22 27 27 O 1.21351 * 119.99937 * 0.02562 * 25 23 22 28 28 H 1.09000 * 109.47084 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47215 * 300.07796 * 1 2 3 30 30 H 1.09002 * 109.47172 * 60.07690 * 1 2 3 31 31 H 1.09003 * 109.60153 * 54.81160 * 4 2 1 32 32 H 1.09002 * 109.58747 * 294.38355 * 4 2 1 33 33 H 1.09001 * 109.47282 * 299.99958 * 8 6 5 34 34 H 1.08999 * 109.47348 * 59.99406 * 8 6 5 35 35 H 0.97003 * 119.99817 * 180.02562 * 13 12 10 36 36 H 1.08994 * 109.58713 * 293.81483 * 18 5 4 37 37 H 1.09004 * 109.70530 * 173.46186 * 18 5 4 38 38 H 1.08994 * 109.50033 * 185.41672 * 19 18 5 39 39 H 1.09003 * 109.49678 * 65.31453 * 19 18 5 40 40 H 0.96995 * 120.00292 * 265.24864 * 22 20 19 41 41 H 0.96999 * 120.00050 * 359.97438 * 26 25 23 42 42 H 0.97005 * 119.99846 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0411 -0.7240 1.2494 5 7 3.5044 -0.8291 1.1696 6 6 4.2807 -0.3855 2.1781 7 8 3.7726 0.1056 3.1637 8 6 5.7802 -0.4998 2.0810 9 16 6.5354 0.1784 3.5797 10 6 8.2384 -0.0771 3.2068 11 1 8.5234 -0.5356 2.2713 12 6 9.2135 0.3098 4.1156 13 7 10.4857 0.1194 3.8368 14 14 8.7202 1.1008 5.7344 15 1 8.5319 0.0468 6.7633 16 1 9.7868 2.0362 6.1735 17 1 7.4500 1.8484 5.5532 18 6 4.1053 -1.4263 -0.0307 19 6 3.5708 -0.6946 -1.2660 20 6 2.0408 -0.7230 -1.2485 21 1 1.6969 -1.7573 -1.2353 22 7 1.5265 -0.0528 -2.4453 23 6 1.3979 -0.7383 -3.5987 24 8 1.7086 -1.9103 -3.6457 25 6 0.8727 -0.0547 -4.8196 26 7 0.7446 -0.7400 -5.9730 27 8 0.5624 1.1175 -4.7725 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5150 0.8892 30 1 -0.3633 0.5126 -0.8907 31 1 1.6053 -1.7220 1.2978 32 1 1.7633 -0.1584 2.1389 33 1 6.0587 -1.5484 1.9760 34 1 6.1317 0.0581 1.2130 35 1 11.1672 0.3894 4.4721 36 1 3.8378 -2.4815 -0.0869 37 1 5.1899 -1.3262 0.0125 38 1 3.9335 -1.1891 -2.1670 39 1 3.9157 0.3394 -1.2539 40 1 1.2823 0.8852 -2.4088 41 1 0.9936 -1.6767 -6.0109 42 1 0.4040 -0.2962 -6.7655 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074172663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:51 Heat of formation + Delta-G solvation = -112.133321 kcal Electronic energy + Delta-G solvation = -25745.698825 eV Core-core repulsion = 21851.761012 eV Total energy + Delta-G solvation = -3893.937813 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.20266 -40.13814 -38.88479 -37.68161 -35.23603 -34.14789 -33.30436 -32.45034 -31.37719 -29.71129 -27.02111 -26.09328 -25.57087 -24.09274 -22.71292 -21.02835 -20.75182 -19.50370 -18.86132 -17.83055 -17.62419 -16.88904 -16.60213 -16.25296 -15.94128 -15.77827 -15.39446 -14.97706 -14.85173 -14.39892 -14.16042 -14.08764 -13.86940 -13.58716 -13.34511 -12.98339 -12.79362 -12.48716 -12.33913 -12.14911 -12.04499 -11.80747 -11.45398 -11.33351 -11.26264 -11.01862 -10.85380 -10.60022 -10.40782 -10.14797 -9.86944 -9.66154 -9.47735 -9.01544 -8.69639 -8.50612 -6.93570 -6.29967 -4.01908 0.95906 2.01792 2.66467 2.76129 2.88198 3.14910 3.32437 3.39657 3.49573 3.56793 4.08123 4.17628 4.31846 4.37710 4.50758 4.62853 4.74911 4.93942 4.97103 5.07492 5.09131 5.15402 5.28132 5.34358 5.43147 5.48667 5.58644 5.70226 5.72457 5.77007 5.79969 5.84401 5.94512 5.96605 6.01017 6.40825 6.47639 6.84084 7.32403 7.38775 7.54417 7.93023 8.38236 8.40435 9.16207 10.79229 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.022828 B = 0.002441 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.268623 B =11468.925117 C =12138.670441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 H 0.085 0.915 4 C 0.123 3.877 5 N -0.621 5.621 6 C 0.535 3.465 7 O -0.518 6.518 8 C -0.122 4.122 9 S -0.143 6.143 10 C -0.521 4.521 11 H 0.088 0.912 12 C 0.095 3.905 13 N -0.880 5.880 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 C 0.111 3.889 19 C -0.147 4.147 20 C 0.149 3.851 21 H 0.097 0.903 22 N -0.691 5.691 23 C 0.507 3.493 24 O -0.518 6.518 25 C 0.513 3.487 26 N -0.823 5.823 27 O -0.522 6.522 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.271 0.729 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.413 0.587 41 H 0.415 0.585 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.817 -3.524 -18.130 28.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.134 4.134 3 H 0.103 0.897 4 C -0.001 4.001 5 N -0.357 5.357 6 C 0.323 3.677 7 O -0.392 6.392 8 C -0.273 4.273 9 S 0.084 5.916 10 C -0.668 4.668 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.517 5.517 14 Si 0.682 3.318 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.159 1.159 18 C -0.013 4.013 19 C -0.186 4.186 20 C 0.045 3.955 21 H 0.115 0.885 22 N -0.343 5.343 23 C 0.287 3.713 24 O -0.394 6.394 25 C 0.292 3.708 26 N -0.389 5.389 27 O -0.397 6.397 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.250 0.750 41 H 0.245 0.755 42 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -22.292 -2.867 -16.408 27.828 hybrid contribution 0.644 -0.127 -1.022 1.215 sum -21.649 -2.994 -17.431 27.955 Atomic orbital electron populations 1.21784 0.93650 1.02491 1.02498 1.21829 0.96708 1.00930 0.93950 0.89669 1.21539 0.79824 1.00697 0.98021 1.48112 1.06176 1.62616 1.18750 1.20309 0.88815 0.76597 0.81965 1.90691 1.75010 1.43078 1.30419 1.23317 0.93232 1.05551 1.05180 1.84798 1.04860 1.80135 1.21842 1.22303 0.88389 1.47317 1.08837 0.89387 1.24715 0.94045 0.94328 0.98242 1.69937 0.99480 1.45720 1.36516 0.86732 0.80531 0.80759 0.83809 1.19204 1.19953 1.15930 1.21698 0.99533 0.96980 0.83083 1.22357 0.94724 1.02571 0.98997 1.21204 0.93692 0.97930 0.82688 0.88521 1.45890 1.63804 1.15381 1.09256 1.20043 0.79686 0.86929 0.84690 1.90787 1.48593 1.15490 1.84483 1.20177 0.78774 0.86664 0.85219 1.43538 1.66967 1.16529 1.11829 1.90836 1.48319 1.15640 1.84881 0.92207 0.91643 0.92209 0.91301 0.88145 0.88469 0.88479 0.91932 0.90872 0.88533 0.89861 0.90625 0.75045 0.75484 0.75635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.03 37.16 0.34 -0.63 16 2 C -0.11 -0.92 2.46 -90.50 -0.22 -1.14 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 4 C 0.12 1.27 5.72 -3.72 -0.02 1.25 16 5 N -0.62 -7.82 2.97 -172.78 -0.51 -8.34 16 6 C 0.54 9.31 7.72 -10.99 -0.08 9.23 16 7 O -0.52 -10.85 15.27 5.56 0.08 -10.77 16 8 C -0.12 -2.32 4.50 36.00 0.16 -2.16 16 9 S -0.14 -3.58 18.55 -107.50 -1.99 -5.58 16 10 C -0.52 -14.86 10.04 30.94 0.31 -14.55 16 11 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 12 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 13 N -0.88 -26.42 13.97 55.49 0.78 -25.65 16 14 Si 0.86 21.68 27.74 -169.99 -4.71 16.97 16 15 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 18 C 0.11 1.11 6.34 -3.71 -0.02 1.08 16 19 C -0.15 -1.29 5.65 -26.61 -0.15 -1.44 16 20 C 0.15 1.19 1.88 -67.89 -0.13 1.06 16 21 H 0.10 0.83 7.58 -51.93 -0.39 0.44 16 22 N -0.69 -5.24 4.35 -54.19 -0.24 -5.48 16 23 C 0.51 4.32 7.85 -11.58 -0.09 4.23 16 24 O -0.52 -5.35 16.14 5.50 0.09 -5.26 16 25 C 0.51 4.04 8.16 -11.58 -0.09 3.94 16 26 N -0.82 -3.67 8.87 30.91 0.27 -3.40 16 27 O -0.52 -5.47 17.31 5.50 0.10 -5.38 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.37 7.37 -51.93 -0.38 -0.01 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.10 1.21 7.01 -51.93 -0.36 0.85 16 33 H 0.10 1.72 7.94 -51.92 -0.41 1.31 16 34 H 0.10 1.72 7.70 -51.92 -0.40 1.32 16 35 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 1.00 5.95 -51.93 -0.31 0.69 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.41 2.86 7.79 -40.82 -0.32 2.54 16 41 H 0.41 1.34 8.30 -40.82 -0.34 1.00 16 42 H 0.41 1.08 8.93 -40.82 -0.36 0.71 16 LS Contribution 362.86 15.07 5.47 5.47 Total: -1.00 -35.85 362.86 -6.59 -42.45 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -5.82 Total: 1.41 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -0.10 Total: 3.55 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.30 Total: -42.86 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: 0.27 Total: -21.41 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.71 Total: 16.97 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.85 -6.59 -42.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074172663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.686 kcal (2) G-P(sol) polarization free energy of solvation -35.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds