Wall clock time and date at job start Tue Mar 31 2020 07:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.52148 * 2 1 4 4 C 1.53184 * 109.48982 * 120.09119 * 2 1 3 5 5 N 1.46924 * 108.77010 * 174.59903 * 4 2 1 6 6 C 1.34776 * 120.63083 * 126.35875 * 5 4 2 7 7 O 1.21281 * 120.00048 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00116 * 180.02562 * 6 5 4 9 9 S 1.81005 * 109.47417 * 179.97438 * 8 6 5 10 10 C 1.76198 * 100.00037 * 179.97438 * 9 8 6 11 11 H 1.08006 * 119.99856 * 359.97438 * 10 9 8 12 12 C 1.38803 * 120.00003 * 180.02562 * 10 9 8 13 13 N 1.31626 * 119.99677 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 119.99711 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47555 * 90.00284 * 14 12 10 16 16 H 1.48510 * 109.46832 * 210.00117 * 14 12 10 17 17 H 1.48495 * 109.47220 * 329.99732 * 14 12 10 18 18 C 1.46922 * 118.73774 * 306.38698 * 5 4 2 19 19 C 1.53196 * 108.77848 * 53.60404 * 18 5 4 20 20 C 1.53038 * 109.31160 * 305.36583 * 19 18 5 21 21 H 1.09003 * 109.46053 * 301.35931 * 20 19 18 22 22 N 1.46494 * 109.46087 * 181.38195 * 20 19 18 23 23 C 1.34784 * 119.99635 * 84.97431 * 22 20 19 24 24 O 1.21346 * 119.99779 * 359.97438 * 23 22 20 25 25 C 1.49454 * 119.99872 * 179.97438 * 23 22 20 26 26 N 1.34774 * 119.99866 * 179.97438 * 25 23 22 27 27 O 1.21351 * 119.99937 * 0.02562 * 25 23 22 28 28 H 1.09000 * 109.47084 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47215 * 300.07796 * 1 2 3 30 30 H 1.09002 * 109.47172 * 60.07690 * 1 2 3 31 31 H 1.09003 * 109.60153 * 54.81160 * 4 2 1 32 32 H 1.09002 * 109.58747 * 294.38355 * 4 2 1 33 33 H 1.09001 * 109.47282 * 299.99958 * 8 6 5 34 34 H 1.08999 * 109.47348 * 59.99406 * 8 6 5 35 35 H 0.97003 * 119.99817 * 180.02562 * 13 12 10 36 36 H 1.08994 * 109.58713 * 293.81483 * 18 5 4 37 37 H 1.09004 * 109.70530 * 173.46186 * 18 5 4 38 38 H 1.08994 * 109.50033 * 185.41672 * 19 18 5 39 39 H 1.09003 * 109.49678 * 65.31453 * 19 18 5 40 40 H 0.96995 * 120.00292 * 265.24864 * 22 20 19 41 41 H 0.96999 * 120.00050 * 359.97438 * 26 25 23 42 42 H 0.97005 * 119.99846 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0411 -0.7240 1.2494 5 7 3.5044 -0.8291 1.1696 6 6 4.2807 -0.3855 2.1781 7 8 3.7726 0.1056 3.1637 8 6 5.7802 -0.4998 2.0810 9 16 6.5354 0.1784 3.5797 10 6 8.2384 -0.0771 3.2068 11 1 8.5234 -0.5356 2.2713 12 6 9.2135 0.3098 4.1156 13 7 10.4857 0.1194 3.8368 14 14 8.7202 1.1008 5.7344 15 1 8.5319 0.0468 6.7633 16 1 9.7868 2.0362 6.1735 17 1 7.4500 1.8484 5.5532 18 6 4.1053 -1.4263 -0.0307 19 6 3.5708 -0.6946 -1.2660 20 6 2.0408 -0.7230 -1.2485 21 1 1.6969 -1.7573 -1.2353 22 7 1.5265 -0.0528 -2.4453 23 6 1.3979 -0.7383 -3.5987 24 8 1.7086 -1.9103 -3.6457 25 6 0.8727 -0.0547 -4.8196 26 7 0.7446 -0.7400 -5.9730 27 8 0.5624 1.1175 -4.7725 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5150 0.8892 30 1 -0.3633 0.5126 -0.8907 31 1 1.6053 -1.7220 1.2978 32 1 1.7633 -0.1584 2.1389 33 1 6.0587 -1.5484 1.9760 34 1 6.1317 0.0581 1.2130 35 1 11.1672 0.3894 4.4721 36 1 3.8378 -2.4815 -0.0869 37 1 5.1899 -1.3262 0.0125 38 1 3.9335 -1.1891 -2.1670 39 1 3.9157 0.3394 -1.2539 40 1 1.2823 0.8852 -2.4088 41 1 0.9936 -1.6767 -6.0109 42 1 0.4040 -0.2962 -6.7655 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074172663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:50 Heat of formation + Delta-G solvation = -141.157568 kcal Electronic energy + Delta-G solvation = -25746.957411 eV Core-core repulsion = 21851.761012 eV Total energy + Delta-G solvation = -3895.196399 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.91824 -41.13495 -39.69517 -38.63121 -36.12684 -34.75983 -34.66815 -34.02860 -32.24512 -31.06734 -27.92138 -27.70004 -26.85603 -24.90169 -23.48697 -21.78886 -21.44668 -20.62339 -19.69127 -19.41975 -18.47890 -18.04370 -17.26852 -17.17929 -16.99129 -16.84214 -16.65386 -16.52117 -15.76161 -15.55117 -15.06459 -15.05219 -14.92135 -14.83051 -14.48173 -14.40930 -13.74055 -13.55556 -13.35098 -13.25570 -13.02584 -12.98218 -12.84617 -12.77561 -12.43746 -12.21366 -12.00683 -11.86356 -11.55847 -11.16959 -10.96852 -10.90496 -10.82464 -10.52779 -10.27576 -9.76600 -8.99830 -8.51326 -6.22127 0.32494 0.97689 1.31629 1.39392 1.45966 1.53248 1.55136 2.04102 2.12766 2.25150 2.67993 2.83553 2.86984 3.40351 3.58499 3.59408 3.69760 3.82887 3.98309 4.18055 4.21756 4.29528 4.37367 4.43058 4.57884 4.65851 4.67345 4.79378 4.86370 4.97558 5.05439 5.12044 5.24534 5.31519 5.50638 5.53617 5.71017 5.91571 6.11695 6.20128 6.27549 6.76284 6.93911 7.01030 7.06645 8.60999 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.022828 B = 0.002441 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.268623 B =11468.925117 C =12138.670441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 H 0.078 0.922 4 C 0.119 3.881 5 N -0.606 5.606 6 C 0.537 3.463 7 O -0.560 6.560 8 C -0.108 4.108 9 S -0.176 6.176 10 C -0.527 4.527 11 H 0.063 0.937 12 C 0.045 3.955 13 N -0.917 5.917 14 Si 0.914 3.086 15 H -0.262 1.262 16 H -0.260 1.260 17 H -0.237 1.237 18 C 0.106 3.894 19 C -0.141 4.141 20 C 0.154 3.846 21 H 0.099 0.901 22 N -0.684 5.684 23 C 0.508 3.492 24 O -0.536 6.536 25 C 0.514 3.486 26 N -0.802 5.802 27 O -0.552 6.552 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.277 0.723 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.417 0.583 41 H 0.423 0.577 42 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.609 -3.995 -19.221 30.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 H 0.096 0.904 4 C -0.003 4.003 5 N -0.340 5.340 6 C 0.324 3.676 7 O -0.438 6.438 8 C -0.259 4.259 9 S 0.051 5.949 10 C -0.675 4.675 11 H 0.081 0.919 12 C -0.160 4.160 13 N -0.555 5.555 14 Si 0.736 3.264 15 H -0.187 1.187 16 H -0.184 1.184 17 H -0.161 1.161 18 C -0.017 4.017 19 C -0.180 4.180 20 C 0.050 3.950 21 H 0.117 0.883 22 N -0.336 5.336 23 C 0.289 3.711 24 O -0.413 6.413 25 C 0.292 3.708 26 N -0.368 5.368 27 O -0.430 6.430 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.255 0.745 41 H 0.255 0.745 42 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -24.104 -3.371 -17.574 30.020 hybrid contribution 1.127 -0.092 -0.880 1.433 sum -22.977 -3.463 -18.454 29.673 Atomic orbital electron populations 1.21753 0.92182 1.03117 1.02910 1.21703 0.97758 1.00113 0.92767 0.90360 1.21742 0.78108 1.01987 0.98492 1.48087 1.07014 1.60790 1.18076 1.19968 0.88174 0.76873 0.82563 1.90677 1.75361 1.45479 1.32326 1.23297 0.94439 1.06063 1.02080 1.84711 1.02899 1.81170 1.26156 1.22445 0.90556 1.46613 1.07864 0.91918 1.25564 0.94077 0.94914 1.01482 1.70015 1.00507 1.46965 1.37983 0.85868 0.80415 0.80199 0.79902 1.18690 1.18409 1.16055 1.21930 0.99372 0.98158 0.82259 1.22286 0.95258 1.02079 0.98388 1.21114 0.93095 0.98031 0.82761 0.88306 1.45826 1.63274 1.15549 1.08951 1.20160 0.79315 0.86658 0.84993 1.90781 1.49570 1.16195 1.84792 1.20085 0.78708 0.86298 0.85693 1.43452 1.65338 1.16803 1.11251 1.90832 1.50081 1.16780 1.85328 0.91467 0.91536 0.91540 0.89169 0.89882 0.87013 0.87113 0.91382 0.88720 0.88878 0.89365 0.91190 0.74512 0.74498 0.74349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.03 71.98 0.65 -0.89 16 2 C -0.10 -1.46 2.46 -10.72 -0.03 -1.48 16 3 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 4 C 0.12 2.25 5.72 86.36 0.49 2.74 16 5 N -0.61 -14.27 2.97 -818.93 -2.43 -16.70 16 6 C 0.54 18.24 7.72 87.66 0.68 18.91 16 7 O -0.56 -23.42 15.27 -3.03 -0.05 -23.47 16 8 C -0.11 -4.03 4.50 71.23 0.32 -3.71 16 9 S -0.18 -8.84 18.55 -56.49 -1.05 -9.89 16 10 C -0.53 -30.51 10.04 67.96 0.68 -29.82 16 11 H 0.06 3.82 8.03 -2.91 -0.02 3.79 16 12 C 0.05 2.64 5.50 84.86 0.47 3.10 16 13 N -0.92 -55.68 13.97 21.65 0.30 -55.38 16 14 Si 0.91 44.90 27.74 68.60 1.90 46.81 16 15 H -0.26 -12.56 7.11 99.48 0.71 -11.86 16 16 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 17 H -0.24 -11.60 6.74 99.48 0.67 -10.93 16 18 C 0.11 1.87 6.34 86.36 0.55 2.42 16 19 C -0.14 -2.17 5.65 30.67 0.17 -2.00 16 20 C 0.15 2.11 1.88 45.02 0.08 2.20 16 21 H 0.10 1.40 7.58 -2.39 -0.02 1.39 16 22 N -0.68 -9.03 4.35 -443.73 -1.93 -10.96 16 23 C 0.51 7.68 7.85 87.27 0.69 8.37 16 24 O -0.54 -9.93 16.14 -3.23 -0.05 -9.99 16 25 C 0.51 7.21 8.16 87.27 0.71 7.92 16 26 N -0.80 -5.54 8.87 -174.50 -1.55 -7.08 16 27 O -0.55 -10.87 17.31 -3.25 -0.06 -10.93 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.66 7.37 -2.39 -0.02 0.65 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.94 7.01 -2.39 -0.02 1.92 16 33 H 0.11 3.85 7.94 -2.39 -0.02 3.83 16 34 H 0.11 3.83 7.70 -2.40 -0.02 3.81 16 35 H 0.28 15.55 8.31 -92.71 -0.77 14.77 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.09 1.75 5.95 -2.38 -0.01 1.73 16 38 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.42 5.04 7.79 -92.71 -0.72 4.31 16 41 H 0.42 1.80 8.30 -92.71 -0.77 1.03 16 42 H 0.42 1.34 8.93 -92.70 -0.83 0.51 16 Total: -1.00 -77.68 362.86 -0.71 -78.40 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -1.27 Total: 11.45 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 5.47 Total: 7.74 kcal Atomic # 7 Polarization: -84.51 SS G_CDS: -5.61 Total: -90.12 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -0.15 Total: -44.38 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.90 Total: 46.81 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.05 Total: -9.89 kcal Total: -77.68 -0.71 -78.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074172663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.760 kcal (2) G-P(sol) polarization free energy of solvation -77.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds