Wall clock time and date at job start Tue Mar 31 2020 07:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.50027 * 2 1 4 4 C 1.53198 * 109.49438 * 239.90816 * 2 1 3 5 5 N 1.46928 * 108.77105 * 185.41495 * 4 2 1 6 6 C 1.34783 * 120.62808 * 233.62394 * 5 4 2 7 7 O 1.21283 * 119.99850 * 0.02562 * 6 5 4 8 8 C 1.50695 * 119.99768 * 180.02562 * 6 5 4 9 9 S 1.81003 * 109.47097 * 180.02562 * 8 6 5 10 10 C 1.76191 * 100.00230 * 180.02562 * 9 8 6 11 11 H 1.08002 * 120.00027 * 359.97438 * 10 9 8 12 12 C 1.38804 * 120.00298 * 179.97438 * 10 9 8 13 13 N 1.31632 * 120.00234 * 179.97438 * 12 10 9 14 14 Si 1.86795 * 119.99787 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47118 * 89.99546 * 14 12 10 16 16 H 1.48496 * 109.47335 * 209.99748 * 14 12 10 17 17 H 1.48506 * 109.47346 * 330.00106 * 14 12 10 18 18 C 1.46931 * 118.74275 * 53.60970 * 5 4 2 19 19 C 1.53191 * 108.76846 * 306.39048 * 18 5 4 20 20 C 1.53031 * 109.49809 * 120.06854 * 2 1 3 21 21 H 1.09008 * 109.46013 * 61.30977 * 20 2 1 22 22 N 1.46499 * 109.46030 * 301.33644 * 20 2 1 23 23 C 1.34784 * 119.99971 * 154.99928 * 22 20 2 24 24 O 1.21341 * 119.99750 * 359.72803 * 23 22 20 25 25 C 1.49449 * 119.99546 * 179.97438 * 23 22 20 26 26 N 1.34784 * 119.99546 * 179.97438 * 25 23 22 27 27 O 1.21346 * 120.00675 * 0.02562 * 25 23 22 28 28 H 1.08993 * 109.46920 * 299.93191 * 1 2 3 29 29 H 1.09003 * 109.46744 * 59.93144 * 1 2 3 30 30 H 1.09000 * 109.47132 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.58402 * 305.19422 * 4 2 1 32 32 H 1.08994 * 109.58969 * 65.48682 * 4 2 1 33 33 H 1.08998 * 109.47312 * 300.00080 * 8 6 5 34 34 H 1.09001 * 109.47337 * 60.00281 * 8 6 5 35 35 H 0.96995 * 120.00231 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.58522 * 66.17058 * 18 5 4 37 37 H 1.08991 * 109.58426 * 186.46132 * 18 5 4 38 38 H 1.09005 * 109.49810 * 294.67861 * 19 18 5 39 39 H 1.09003 * 109.49264 * 174.59130 * 19 18 5 40 40 H 0.96999 * 119.99984 * 334.99776 * 22 20 2 41 41 H 0.96999 * 120.00044 * 0.02562 * 26 25 23 42 42 H 0.96991 * 119.99641 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0413 -0.7241 -1.2495 5 7 3.5046 -0.8294 -1.1694 6 6 4.2812 -0.3862 -2.1780 7 8 3.7732 0.1057 -3.1634 8 6 5.7806 -0.5017 -2.0811 9 16 6.5360 0.1762 -3.5798 10 6 8.2388 -0.0808 -3.2073 11 1 8.5237 -0.5390 -2.2717 12 6 9.2141 0.3056 -4.1162 13 7 10.4863 0.1140 -3.8377 14 14 8.7213 1.0988 -5.7340 15 1 8.6503 2.5720 -5.5617 16 1 9.7292 0.7700 -6.7738 17 1 7.3924 0.5849 -6.1528 18 6 4.1054 -1.4268 0.0310 19 6 3.5709 -0.6948 1.2660 20 6 2.0408 -0.7228 1.2484 21 1 1.6969 -1.7571 1.2355 22 7 1.5266 -0.0524 2.4452 23 6 1.3985 -0.7375 3.5989 24 8 1.7045 -1.9108 3.6449 25 6 0.8744 -0.0533 4.8199 26 7 0.7459 -0.7386 5.9734 27 8 0.5637 1.1187 4.7726 28 1 -0.3633 0.5127 0.8905 29 1 -0.3633 0.5149 -0.8894 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6053 -1.7219 -1.2976 32 1 1.7616 -0.1597 -2.1390 33 1 6.1327 0.0556 -1.2131 34 1 6.0582 -1.5506 -1.9765 35 1 11.1678 0.3844 -4.4727 36 1 3.8375 -2.4819 0.0872 37 1 5.1897 -1.3269 -0.0148 38 1 3.9160 0.3391 1.2539 39 1 3.9335 -1.1892 2.1672 40 1 1.2782 0.8845 2.4074 41 1 0.9939 -1.6756 6.0111 42 1 0.4054 -0.2947 6.7657 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074172664.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:13 Heat of formation + Delta-G solvation = -112.103668 kcal Electronic energy + Delta-G solvation = -25745.267353 eV Core-core repulsion = 21851.330826 eV Total energy + Delta-G solvation = -3893.936527 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = -2.68 seconds Orbital eigenvalues (eV) -41.20308 -40.13737 -38.88529 -37.68203 -35.23597 -34.14793 -33.30432 -32.44966 -31.37648 -29.71193 -27.02146 -26.09419 -25.57170 -24.09338 -22.71424 -21.02645 -20.75170 -19.50377 -18.86188 -17.83067 -17.62432 -16.88997 -16.60213 -16.25495 -15.94051 -15.77840 -15.39323 -14.97741 -14.85151 -14.39694 -14.16332 -14.09099 -13.86356 -13.59234 -13.34316 -12.98524 -12.79464 -12.48808 -12.33830 -12.15000 -12.04547 -11.80721 -11.45409 -11.33175 -11.26364 -11.01900 -10.85307 -10.60111 -10.40763 -10.14854 -9.86971 -9.66157 -9.47827 -9.01538 -8.69574 -8.50650 -6.93575 -6.29954 -4.01917 0.95904 2.01803 2.66434 2.76134 2.88212 3.14869 3.32336 3.39636 3.49601 3.56777 4.08114 4.17607 4.31838 4.37616 4.50682 4.62833 4.74966 4.93966 4.97061 5.07428 5.09099 5.15365 5.28116 5.34221 5.43103 5.48571 5.58582 5.70182 5.72472 5.77005 5.79887 5.84337 5.94519 5.96588 6.01054 6.40820 6.47640 6.84073 7.32411 7.38743 7.54415 7.93019 8.38222 8.40448 9.16194 10.79239 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.022826 B = 0.002441 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.352413 B =11469.537381 C =12139.070622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 H 0.085 0.915 4 C 0.123 3.877 5 N -0.621 5.621 6 C 0.535 3.465 7 O -0.518 6.518 8 C -0.122 4.122 9 S -0.143 6.143 10 C -0.521 4.521 11 H 0.088 0.912 12 C 0.095 3.905 13 N -0.880 5.880 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 C 0.111 3.889 19 C -0.147 4.147 20 C 0.149 3.851 21 H 0.097 0.903 22 N -0.691 5.691 23 C 0.507 3.493 24 O -0.518 6.518 25 C 0.513 3.487 26 N -0.823 5.823 27 O -0.522 6.522 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.271 0.729 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.413 0.587 41 H 0.415 0.585 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.822 -3.663 18.060 28.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.134 4.134 3 H 0.103 0.897 4 C -0.001 4.001 5 N -0.357 5.357 6 C 0.323 3.677 7 O -0.392 6.392 8 C -0.273 4.273 9 S 0.084 5.916 10 C -0.668 4.668 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.517 5.517 14 Si 0.682 3.318 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 C -0.013 4.013 19 C -0.186 4.186 20 C 0.045 3.955 21 H 0.115 0.885 22 N -0.343 5.343 23 C 0.287 3.713 24 O -0.394 6.394 25 C 0.292 3.708 26 N -0.389 5.389 27 O -0.397 6.397 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.250 0.750 41 H 0.245 0.755 42 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -22.297 -3.010 16.336 27.805 hybrid contribution 0.644 -0.064 1.051 1.234 sum -21.653 -3.074 17.387 27.940 Atomic orbital electron populations 1.21785 0.93653 1.02493 1.02496 1.21829 0.96705 1.00933 0.93952 0.89669 1.21532 0.79833 1.00700 0.98012 1.48118 1.06169 1.62625 1.18750 1.20311 0.88812 0.76606 0.81958 1.90691 1.75017 1.43059 1.30429 1.23317 0.93233 1.05581 1.05153 1.84796 1.04889 1.80747 1.21197 1.22302 0.88376 1.47401 1.08767 0.89386 1.24716 0.94045 0.94334 0.98232 1.69935 0.99468 1.45719 1.36537 0.86734 0.80805 0.80910 0.83395 1.19220 1.19944 1.15916 1.21704 0.99525 0.96980 0.83077 1.22354 0.94718 1.02569 0.98991 1.21200 0.93694 0.97930 0.82688 0.88524 1.45892 1.63733 1.15482 1.09230 1.20040 0.79661 0.86937 0.84705 1.90785 1.48663 1.15379 1.84523 1.20178 0.78775 0.86663 0.85218 1.43538 1.66994 1.16500 1.11837 1.90835 1.48304 1.15658 1.84872 0.92213 0.91640 0.92204 0.91318 0.88148 0.88519 0.88424 0.91930 0.90871 0.88531 0.90625 0.89865 0.75045 0.75484 0.75640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.03 37.16 0.34 -0.63 16 2 C -0.11 -0.92 2.46 -90.50 -0.22 -1.14 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 4 C 0.12 1.27 5.71 -3.71 -0.02 1.25 16 5 N -0.62 -7.83 2.97 -172.77 -0.51 -8.34 16 6 C 0.54 9.31 7.72 -10.98 -0.08 9.23 16 7 O -0.52 -10.85 15.28 5.55 0.08 -10.77 16 8 C -0.12 -2.32 4.50 36.00 0.16 -2.16 16 9 S -0.14 -3.58 18.55 -107.50 -1.99 -5.57 16 10 C -0.52 -14.86 10.04 30.94 0.31 -14.55 16 11 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 12 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 13 N -0.88 -26.42 13.97 55.49 0.78 -25.65 16 14 Si 0.86 21.68 27.74 -169.99 -4.71 16.97 16 15 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 17 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 18 C 0.11 1.11 6.34 -3.71 -0.02 1.08 16 19 C -0.15 -1.29 5.65 -26.61 -0.15 -1.44 16 20 C 0.15 1.19 1.88 -67.90 -0.13 1.06 16 21 H 0.10 0.83 7.57 -51.92 -0.39 0.44 16 22 N -0.69 -5.25 4.36 -54.20 -0.24 -5.48 16 23 C 0.51 4.32 7.85 -11.58 -0.09 4.23 16 24 O -0.52 -5.35 16.14 5.50 0.09 -5.26 16 25 C 0.51 4.04 8.16 -11.58 -0.09 3.94 16 26 N -0.82 -3.68 8.87 30.91 0.27 -3.40 16 27 O -0.52 -5.47 17.31 5.50 0.10 -5.38 16 28 H 0.06 0.37 7.36 -51.93 -0.38 -0.01 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.10 1.21 7.01 -51.93 -0.36 0.85 16 33 H 0.10 1.71 7.69 -51.92 -0.40 1.31 16 34 H 0.10 1.73 7.94 -51.92 -0.41 1.32 16 35 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 1.00 5.93 -51.93 -0.31 0.69 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.41 2.86 7.78 -40.82 -0.32 2.54 16 41 H 0.41 1.34 8.30 -40.82 -0.34 1.00 16 42 H 0.41 1.08 8.93 -40.82 -0.36 0.71 16 LS Contribution 362.83 15.07 5.47 5.47 Total: -1.00 -35.85 362.83 -6.59 -42.45 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -5.82 Total: 1.42 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -0.10 Total: 3.56 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.30 Total: -42.87 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: 0.27 Total: -21.41 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.71 Total: 16.97 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.85 -6.59 -42.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074172664.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.658 kcal (2) G-P(sol) polarization free energy of solvation -35.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -2.68 seconds