Wall clock time and date at job start Tue Mar 31 2020 07:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.50027 * 2 1 4 4 C 1.53198 * 109.49438 * 239.90816 * 2 1 3 5 5 N 1.46928 * 108.77105 * 185.41495 * 4 2 1 6 6 C 1.34783 * 120.62808 * 233.62394 * 5 4 2 7 7 O 1.21283 * 119.99850 * 0.02562 * 6 5 4 8 8 C 1.50695 * 119.99768 * 180.02562 * 6 5 4 9 9 S 1.81003 * 109.47097 * 180.02562 * 8 6 5 10 10 C 1.76191 * 100.00230 * 180.02562 * 9 8 6 11 11 H 1.08002 * 120.00027 * 359.97438 * 10 9 8 12 12 C 1.38804 * 120.00298 * 179.97438 * 10 9 8 13 13 N 1.31632 * 120.00234 * 179.97438 * 12 10 9 14 14 Si 1.86795 * 119.99787 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47118 * 89.99546 * 14 12 10 16 16 H 1.48496 * 109.47335 * 209.99748 * 14 12 10 17 17 H 1.48506 * 109.47346 * 330.00106 * 14 12 10 18 18 C 1.46931 * 118.74275 * 53.60970 * 5 4 2 19 19 C 1.53191 * 108.76846 * 306.39048 * 18 5 4 20 20 C 1.53031 * 109.49809 * 120.06854 * 2 1 3 21 21 H 1.09008 * 109.46013 * 61.30977 * 20 2 1 22 22 N 1.46499 * 109.46030 * 301.33644 * 20 2 1 23 23 C 1.34784 * 119.99971 * 154.99928 * 22 20 2 24 24 O 1.21341 * 119.99750 * 359.72803 * 23 22 20 25 25 C 1.49449 * 119.99546 * 179.97438 * 23 22 20 26 26 N 1.34784 * 119.99546 * 179.97438 * 25 23 22 27 27 O 1.21346 * 120.00675 * 0.02562 * 25 23 22 28 28 H 1.08993 * 109.46920 * 299.93191 * 1 2 3 29 29 H 1.09003 * 109.46744 * 59.93144 * 1 2 3 30 30 H 1.09000 * 109.47132 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.58402 * 305.19422 * 4 2 1 32 32 H 1.08994 * 109.58969 * 65.48682 * 4 2 1 33 33 H 1.08998 * 109.47312 * 300.00080 * 8 6 5 34 34 H 1.09001 * 109.47337 * 60.00281 * 8 6 5 35 35 H 0.96995 * 120.00231 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.58522 * 66.17058 * 18 5 4 37 37 H 1.08991 * 109.58426 * 186.46132 * 18 5 4 38 38 H 1.09005 * 109.49810 * 294.67861 * 19 18 5 39 39 H 1.09003 * 109.49264 * 174.59130 * 19 18 5 40 40 H 0.96999 * 119.99984 * 334.99776 * 22 20 2 41 41 H 0.96999 * 120.00044 * 0.02562 * 26 25 23 42 42 H 0.96991 * 119.99641 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0413 -0.7241 -1.2495 5 7 3.5046 -0.8294 -1.1694 6 6 4.2812 -0.3862 -2.1780 7 8 3.7732 0.1057 -3.1634 8 6 5.7806 -0.5017 -2.0811 9 16 6.5360 0.1762 -3.5798 10 6 8.2388 -0.0808 -3.2073 11 1 8.5237 -0.5390 -2.2717 12 6 9.2141 0.3056 -4.1162 13 7 10.4863 0.1140 -3.8377 14 14 8.7213 1.0988 -5.7340 15 1 8.6503 2.5720 -5.5617 16 1 9.7292 0.7700 -6.7738 17 1 7.3924 0.5849 -6.1528 18 6 4.1054 -1.4268 0.0310 19 6 3.5709 -0.6948 1.2660 20 6 2.0408 -0.7228 1.2484 21 1 1.6969 -1.7571 1.2355 22 7 1.5266 -0.0524 2.4452 23 6 1.3985 -0.7375 3.5989 24 8 1.7045 -1.9108 3.6449 25 6 0.8744 -0.0533 4.8199 26 7 0.7459 -0.7386 5.9734 27 8 0.5637 1.1187 4.7726 28 1 -0.3633 0.5127 0.8905 29 1 -0.3633 0.5149 -0.8894 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6053 -1.7219 -1.2976 32 1 1.7616 -0.1597 -2.1390 33 1 6.1327 0.0556 -1.2131 34 1 6.0582 -1.5506 -1.9765 35 1 11.1678 0.3844 -4.4727 36 1 3.8375 -2.4819 0.0872 37 1 5.1897 -1.3269 -0.0148 38 1 3.9160 0.3391 1.2539 39 1 3.9335 -1.1892 2.1672 40 1 1.2782 0.8845 2.4074 41 1 0.9939 -1.6756 6.0111 42 1 0.4054 -0.2947 6.7657 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074172664.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:54 Heat of formation + Delta-G solvation = -141.130181 kcal Electronic energy + Delta-G solvation = -25746.526037 eV Core-core repulsion = 21851.330826 eV Total energy + Delta-G solvation = -3895.195211 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 8.01 seconds Orbital eigenvalues (eV) -41.91845 -41.13435 -39.69579 -38.63170 -36.12707 -34.75986 -34.66750 -34.02843 -32.24449 -31.06766 -27.92209 -27.70041 -26.85691 -24.90251 -23.48807 -21.78739 -21.44626 -20.62417 -19.69135 -19.41996 -18.47950 -18.04403 -17.26919 -17.17791 -16.99370 -16.84237 -16.65386 -16.52001 -15.76265 -15.55113 -15.06570 -15.05195 -14.91671 -14.83416 -14.48125 -14.41183 -13.74024 -13.55085 -13.36218 -13.25434 -13.02954 -12.97051 -12.84850 -12.77946 -12.43729 -12.21298 -12.00719 -11.86348 -11.55837 -11.16984 -10.96896 -10.90492 -10.82506 -10.52781 -10.27642 -9.76572 -8.99834 -8.51319 -6.22131 0.32478 0.97682 1.31509 1.39341 1.46110 1.53008 1.55236 2.04073 2.12754 2.25120 2.67982 2.83510 2.86947 3.40329 3.58483 3.59379 3.69740 3.82804 3.98378 4.18023 4.21761 4.29514 4.37315 4.43016 4.57790 4.65816 4.67292 4.79404 4.86355 4.97538 5.05403 5.11956 5.24497 5.31502 5.50633 5.53647 5.71015 5.91558 6.11718 6.20098 6.27525 6.76271 6.93898 7.01029 7.06630 8.61008 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.022826 B = 0.002441 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.352413 B =11469.537381 C =12139.070622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 H 0.078 0.922 4 C 0.119 3.881 5 N -0.606 5.606 6 C 0.537 3.463 7 O -0.560 6.560 8 C -0.108 4.108 9 S -0.176 6.176 10 C -0.527 4.527 11 H 0.063 0.937 12 C 0.045 3.955 13 N -0.917 5.917 14 Si 0.914 3.086 15 H -0.263 1.263 16 H -0.260 1.260 17 H -0.236 1.236 18 C 0.106 3.894 19 C -0.141 4.141 20 C 0.154 3.846 21 H 0.099 0.901 22 N -0.684 5.684 23 C 0.508 3.492 24 O -0.536 6.536 25 C 0.514 3.486 26 N -0.802 5.802 27 O -0.552 6.552 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.277 0.723 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.417 0.583 41 H 0.423 0.577 42 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.616 -4.156 19.140 30.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 H 0.096 0.904 4 C -0.003 4.003 5 N -0.340 5.340 6 C 0.324 3.676 7 O -0.438 6.438 8 C -0.259 4.259 9 S 0.051 5.949 10 C -0.675 4.675 11 H 0.081 0.919 12 C -0.160 4.160 13 N -0.555 5.555 14 Si 0.736 3.264 15 H -0.187 1.187 16 H -0.184 1.184 17 H -0.160 1.160 18 C -0.017 4.017 19 C -0.180 4.180 20 C 0.050 3.950 21 H 0.117 0.883 22 N -0.336 5.336 23 C 0.289 3.711 24 O -0.413 6.413 25 C 0.292 3.708 26 N -0.368 5.368 27 O -0.430 6.430 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.255 0.745 41 H 0.255 0.745 42 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -24.110 -3.538 17.490 29.995 hybrid contribution 1.128 -0.014 0.916 1.453 sum -22.982 -3.552 18.405 29.657 Atomic orbital electron populations 1.21755 0.92183 1.03119 1.02911 1.21702 0.97756 1.00116 0.92767 0.90358 1.21735 0.78118 1.01993 0.98488 1.48093 1.07007 1.60799 1.18076 1.19970 0.88171 0.76881 0.82556 1.90678 1.75368 1.45459 1.32336 1.23297 0.94438 1.06081 1.02064 1.84709 1.02926 1.81718 1.25578 1.22444 0.90545 1.46692 1.07797 0.91917 1.25564 0.94075 0.94920 1.01475 1.70013 1.00495 1.46952 1.38015 0.85870 0.80642 0.80066 0.79818 1.18738 1.18381 1.16030 1.21935 0.99357 0.98159 0.82253 1.22283 0.95253 1.02075 0.98385 1.21111 0.93096 0.98031 0.82762 0.88310 1.45828 1.63205 1.15649 1.08925 1.20157 0.79289 0.86667 0.85009 1.90780 1.49640 1.16082 1.84831 1.20086 0.78709 0.86297 0.85691 1.43451 1.65364 1.16776 1.11259 1.90830 1.50065 1.16797 1.85321 0.91541 0.91529 0.91466 0.89190 0.89875 0.87143 0.86977 0.91379 0.88717 0.88883 0.91194 0.89365 0.74511 0.74498 0.74354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.03 71.98 0.65 -0.89 16 2 C -0.10 -1.46 2.46 -10.72 -0.03 -1.48 16 3 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 4 C 0.12 2.25 5.71 86.36 0.49 2.74 16 5 N -0.61 -14.27 2.97 -818.89 -2.43 -16.71 16 6 C 0.54 18.23 7.72 87.65 0.68 18.91 16 7 O -0.56 -23.42 15.28 -3.04 -0.05 -23.46 16 8 C -0.11 -4.03 4.50 71.23 0.32 -3.71 16 9 S -0.18 -8.84 18.55 -56.49 -1.05 -9.89 16 10 C -0.53 -30.50 10.04 67.96 0.68 -29.82 16 11 H 0.06 3.82 8.03 -2.91 -0.02 3.79 16 12 C 0.05 2.64 5.50 84.86 0.47 3.10 16 13 N -0.92 -55.68 13.97 21.65 0.30 -55.38 16 14 Si 0.91 44.90 27.74 68.60 1.90 46.81 16 15 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 16 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 17 H -0.24 -11.58 6.74 99.48 0.67 -10.91 16 18 C 0.11 1.87 6.34 86.36 0.55 2.42 16 19 C -0.14 -2.17 5.65 30.67 0.17 -2.00 16 20 C 0.15 2.11 1.88 45.01 0.08 2.20 16 21 H 0.10 1.40 7.57 -2.38 -0.02 1.39 16 22 N -0.68 -9.03 4.36 -443.75 -1.93 -10.97 16 23 C 0.51 7.68 7.85 87.27 0.69 8.37 16 24 O -0.54 -9.93 16.14 -3.22 -0.05 -9.99 16 25 C 0.51 7.21 8.16 87.27 0.71 7.93 16 26 N -0.80 -5.54 8.87 -174.49 -1.55 -7.09 16 27 O -0.55 -10.87 17.31 -3.23 -0.06 -10.93 16 28 H 0.07 0.66 7.36 -2.39 -0.02 0.65 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.94 7.01 -2.39 -0.02 1.92 16 33 H 0.11 3.81 7.69 -2.40 -0.02 3.80 16 34 H 0.11 3.86 7.94 -2.39 -0.02 3.84 16 35 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.09 1.75 5.93 -2.39 -0.01 1.73 16 38 H 0.07 1.18 8.14 -2.38 -0.02 1.17 16 39 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.42 5.04 7.78 -92.71 -0.72 4.32 16 41 H 0.42 1.80 8.30 -92.71 -0.77 1.03 16 42 H 0.42 1.34 8.93 -92.71 -0.83 0.51 16 Total: -1.00 -77.68 362.83 -0.71 -78.40 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -1.27 Total: 11.45 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 5.47 Total: 7.75 kcal Atomic # 7 Polarization: -84.52 SS G_CDS: -5.61 Total: -90.14 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -0.15 Total: -44.38 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.90 Total: 46.81 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.05 Total: -9.89 kcal Total: -77.68 -0.71 -78.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074172664.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.732 kcal (2) G-P(sol) polarization free energy of solvation -77.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.01 seconds