Wall clock time and date at job start Tue Mar 31 2020 07:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.70407 * 2 1 4 4 C 1.53188 * 109.58561 * 239.63695 * 2 1 3 5 5 C 1.53044 * 109.31648 * 294.84687 * 4 2 1 6 6 H 1.08995 * 109.45394 * 58.64375 * 5 4 2 7 7 N 1.46505 * 109.45941 * 178.61669 * 5 4 2 8 8 C 1.34779 * 119.99455 * 205.03030 * 7 5 4 9 9 O 1.21277 * 120.00153 * 359.97438 * 8 7 5 10 10 C 1.50702 * 119.99322 * 179.97438 * 8 7 5 11 11 S 1.81001 * 109.46668 * 179.97438 * 10 8 7 12 12 C 1.76202 * 100.00131 * 180.02562 * 11 10 8 13 13 H 1.08007 * 119.99421 * 0.02562 * 12 11 10 14 14 C 1.38794 * 120.00182 * 180.02562 * 12 11 10 15 15 N 1.31628 * 119.99983 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 120.00265 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.47089 * 270.00460 * 16 14 12 18 18 H 1.48498 * 109.46952 * 29.99850 * 16 14 12 19 19 H 1.48499 * 109.47307 * 150.00237 * 16 14 12 20 20 C 1.53039 * 109.52622 * 298.62817 * 5 4 2 21 21 C 1.53198 * 109.30844 * 61.38726 * 20 5 4 22 22 N 1.46919 * 108.76279 * 305.33804 * 21 20 5 23 23 C 1.34785 * 120.63064 * 233.63963 * 22 21 20 24 24 O 1.21347 * 119.99793 * 171.34246 * 23 22 21 25 25 C 1.49444 * 119.99719 * 351.34087 * 23 22 21 26 26 N 1.34784 * 119.99770 * 173.22458 * 25 23 22 27 27 O 1.21340 * 120.00513 * 353.22727 * 25 23 22 28 28 H 1.09002 * 109.47106 * 180.35894 * 1 2 3 29 29 H 1.08993 * 109.47105 * 300.35687 * 1 2 3 30 30 H 1.08997 * 109.47174 * 60.36330 * 1 2 3 31 31 H 1.09009 * 109.49734 * 174.89812 * 4 2 1 32 32 H 1.09002 * 109.49910 * 54.80296 * 4 2 1 33 33 H 0.96998 * 119.99774 * 25.02906 * 7 5 4 34 34 H 1.08996 * 109.47101 * 60.00410 * 10 8 7 35 35 H 1.09001 * 109.47443 * 299.99822 * 10 8 7 36 36 H 0.96995 * 120.00313 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.49320 * 181.31683 * 20 5 4 38 38 H 1.09000 * 109.50002 * 301.41820 * 20 5 4 39 39 H 1.09000 * 109.57723 * 185.56428 * 21 20 5 40 40 H 1.08996 * 109.71872 * 65.20066 * 21 20 5 41 41 H 0.97002 * 119.99999 * 0.02562 * 26 25 23 42 42 H 0.96996 * 120.00042 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7295 -1.2453 5 6 1.6414 -2.2043 -1.1699 6 1 0.5566 -2.2816 -1.0988 7 7 2.1024 -2.8981 -2.3751 8 6 1.4747 -4.0160 -2.7907 9 8 0.5287 -4.4479 -2.1667 10 6 1.9485 -4.7293 -4.0307 11 16 0.9113 -6.1834 -4.3237 12 6 1.6666 -6.8081 -5.7880 13 1 2.5133 -6.2952 -6.2198 14 6 1.1734 -7.9592 -6.3864 15 7 1.7380 -8.4261 -7.4799 16 14 -0.2906 -8.8468 -5.6391 17 1 0.1890 -9.8580 -4.6631 18 1 -1.1635 -7.8653 -4.9463 19 1 -1.0611 -9.5225 -6.7138 20 6 2.2803 -2.8462 0.0637 21 6 1.7691 -2.1409 1.3240 22 7 2.0225 -0.6995 1.1945 23 6 2.6944 -0.0316 2.1533 24 8 3.0347 1.1181 1.9667 25 6 3.0200 -0.7070 3.4460 26 7 3.8075 -0.0898 4.3491 27 8 2.5756 -1.8110 3.6826 28 1 -0.3633 -1.0277 0.0064 29 1 -0.3633 0.5193 0.8867 30 1 -0.3633 0.5082 -0.8932 31 1 3.1298 -0.6505 -1.2912 32 1 1.6075 -0.2787 -2.1368 33 1 2.8593 -2.5528 -2.8739 34 1 2.9837 -5.0431 -3.8963 35 1 1.8809 -4.0562 -4.8854 36 1 1.3936 -9.2308 -7.8980 37 1 2.0127 -3.9021 0.1042 38 1 3.3642 -2.7471 0.0054 39 1 2.2944 -2.5273 2.1973 40 1 0.6988 -2.3153 1.4344 41 1 4.1625 0.7929 4.1601 42 1 4.0192 -0.5283 5.1880 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074843455.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:39 Heat of formation + Delta-G solvation = -97.796714 kcal Electronic energy + Delta-G solvation = -25834.561918 eV Core-core repulsion = 21941.245787 eV Total energy + Delta-G solvation = -3893.316131 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 4.46 seconds Orbital eigenvalues (eV) -41.45873 -39.84813 -38.91322 -37.89934 -34.97771 -34.11368 -32.79154 -32.44727 -31.68183 -29.24537 -27.86196 -25.90102 -25.61118 -24.07319 -22.91580 -21.25014 -20.46909 -19.52387 -18.39762 -17.79337 -17.57144 -17.04755 -16.55192 -16.35016 -15.95250 -15.50210 -15.12282 -14.97922 -14.82790 -14.57484 -14.26898 -14.06320 -13.85745 -13.53344 -13.35180 -13.22888 -12.80265 -12.50347 -12.45758 -12.16329 -11.87770 -11.77470 -11.53389 -11.27320 -11.20226 -11.01433 -10.72213 -10.54988 -10.39958 -9.87124 -9.76468 -9.54975 -9.15461 -9.02117 -8.95426 -8.51096 -6.92646 -6.29609 -4.01439 0.94556 1.97425 2.69594 2.76843 2.94305 3.19192 3.29583 3.33497 3.49888 3.63400 3.97989 4.29490 4.32559 4.54859 4.55918 4.72082 4.76502 4.86727 5.01762 5.09414 5.10357 5.15972 5.21673 5.39889 5.48311 5.51994 5.60616 5.66319 5.74648 5.75268 5.82606 6.00029 6.02029 6.07485 6.21148 6.43251 6.53090 6.79424 7.29148 7.53974 7.58836 7.93429 8.40874 8.46863 9.16539 10.79621 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.027597 B = 0.002310 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.347287 B =12119.110296 C =12424.017258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.139 3.861 3 H 0.107 0.893 4 C -0.136 4.136 5 C 0.144 3.856 6 H 0.094 0.906 7 N -0.733 5.733 8 C 0.532 3.468 9 O -0.518 6.518 10 C -0.125 4.125 11 S -0.141 6.141 12 C -0.522 4.522 13 H 0.088 0.912 14 C 0.095 3.905 15 N -0.880 5.880 16 Si 0.857 3.143 17 H -0.267 1.267 18 H -0.235 1.235 19 H -0.274 1.274 20 C -0.145 4.145 21 C 0.072 3.928 22 N -0.573 5.573 23 C 0.508 3.492 24 O -0.526 6.526 25 C 0.514 3.486 26 N -0.821 5.821 27 O -0.509 6.509 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.399 0.601 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.271 0.729 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.140 0.860 40 H 0.076 0.924 41 H 0.414 0.586 42 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.013 21.041 20.943 29.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.036 3.964 3 H 0.125 0.875 4 C -0.174 4.174 5 C 0.039 3.961 6 H 0.112 0.888 7 N -0.387 5.387 8 C 0.318 3.682 9 O -0.392 6.392 10 C -0.275 4.275 11 S 0.085 5.915 12 C -0.669 4.669 13 H 0.106 0.894 14 C -0.114 4.114 15 N -0.517 5.517 16 Si 0.682 3.318 17 H -0.192 1.192 18 H -0.159 1.159 19 H -0.200 1.200 20 C -0.185 4.185 21 C -0.050 4.050 22 N -0.306 5.306 23 C 0.290 3.710 24 O -0.402 6.402 25 C 0.294 3.706 26 N -0.387 5.387 27 O -0.385 6.385 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.233 0.767 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.157 0.843 40 H 0.094 0.906 41 H 0.245 0.755 42 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 2.233 20.081 21.702 29.652 hybrid contribution 1.245 0.277 -0.735 1.472 sum 3.478 20.358 20.967 29.431 Atomic orbital electron populations 1.22205 0.93970 1.03391 1.02878 1.21305 0.94715 0.97467 0.82934 0.87510 1.22214 1.02232 0.94928 0.98057 1.20950 1.00493 0.90208 0.84480 0.88827 1.46044 1.35911 1.28120 1.28591 1.20290 0.82417 0.79861 0.85629 1.90696 1.27209 1.64775 1.56544 1.23287 1.04724 1.01916 0.97610 1.84783 1.43420 1.27089 1.36211 1.22317 1.19874 1.14550 1.10167 0.89405 1.24719 0.96740 0.95874 0.94026 1.69935 1.40631 1.22577 1.18545 0.86729 0.83496 0.81732 0.79856 1.19210 1.15911 1.19955 1.22371 1.00922 1.01354 0.93827 1.22865 1.03338 0.77573 1.01209 1.48156 1.52780 1.10455 1.19238 1.19971 0.79552 0.86521 0.84963 1.90756 1.51987 1.17507 1.79989 1.20198 0.79181 0.85539 0.85715 1.43564 1.51063 1.23239 1.20793 1.90598 1.51614 1.19190 1.77126 0.91335 0.92075 0.90665 0.90688 0.89460 0.76723 0.88541 0.88492 0.91937 0.89393 0.91427 0.84273 0.90588 0.75537 0.75574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 9.02 37.16 0.34 -0.92 16 2 C 0.14 1.12 3.22 -67.60 -0.22 0.90 16 3 H 0.11 0.89 7.00 -51.93 -0.36 0.53 16 4 C -0.14 -1.06 5.02 -26.61 -0.13 -1.20 16 5 C 0.14 1.50 2.21 -67.88 -0.15 1.35 16 6 H 0.09 1.14 5.94 -51.93 -0.31 0.83 16 7 N -0.73 -8.72 5.08 -53.76 -0.27 -8.99 16 8 C 0.53 9.00 7.81 -10.98 -0.09 8.92 16 9 O -0.52 -10.65 15.52 5.56 0.09 -10.56 16 10 C -0.12 -2.35 6.16 36.01 0.22 -2.13 16 11 S -0.14 -3.54 18.55 -107.50 -1.99 -5.53 16 12 C -0.52 -14.93 10.04 30.94 0.31 -14.62 16 13 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 14 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 15 N -0.88 -26.50 13.97 55.49 0.78 -25.72 16 16 Si 0.86 21.72 27.74 -169.99 -4.72 17.00 16 17 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.24 -5.94 6.74 56.52 0.38 -5.55 16 19 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 20 C -0.15 -1.51 5.65 -26.61 -0.15 -1.66 16 21 C 0.07 0.68 5.56 -3.71 -0.02 0.66 16 22 N -0.57 -5.16 2.68 -165.73 -0.44 -5.60 16 23 C 0.51 4.78 7.73 -11.58 -0.09 4.69 16 24 O -0.53 -5.70 15.93 5.50 0.09 -5.61 16 25 C 0.51 4.27 8.01 -11.58 -0.09 4.18 16 26 N -0.82 -3.80 8.87 30.90 0.27 -3.53 16 27 O -0.51 -5.36 14.02 5.51 0.08 -5.28 16 28 H 0.07 0.58 5.72 -51.93 -0.30 0.28 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.40 3.69 8.60 -40.82 -0.35 3.34 16 34 H 0.10 1.70 8.14 -51.92 -0.42 1.27 16 35 H 0.10 1.70 8.14 -51.92 -0.42 1.27 16 36 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.14 1.43 4.32 -54.76 -0.24 1.19 16 40 H 0.08 0.73 7.49 -51.93 -0.39 0.34 16 41 H 0.41 1.38 8.32 -40.82 -0.34 1.04 16 42 H 0.41 1.11 8.93 -40.82 -0.36 0.75 16 LS Contribution 357.04 15.07 5.38 5.38 Total: -1.00 -35.59 357.04 -6.52 -42.12 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -5.61 Total: 3.47 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -0.17 Total: 2.86 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.33 Total: -43.84 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: 0.25 Total: -21.45 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.72 Total: 17.00 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.59 -6.52 -42.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074843455.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.681 kcal (2) G-P(sol) polarization free energy of solvation -35.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.46 seconds