Wall clock time and date at job start Tue Mar 31 2020 07:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.69741 * 2 1 4 4 C 1.53193 * 109.58452 * 120.34997 * 2 1 3 5 5 C 1.53044 * 109.33410 * 174.43774 * 4 2 1 6 6 H 1.09003 * 109.45545 * 178.60028 * 5 4 2 7 7 N 1.46500 * 109.45876 * 58.63005 * 5 4 2 8 8 C 1.34776 * 119.99783 * 154.99839 * 7 5 4 9 9 O 1.21286 * 120.00385 * 359.97438 * 8 7 5 10 10 C 1.50698 * 119.99833 * 179.97438 * 8 7 5 11 11 S 1.81004 * 109.47256 * 180.02562 * 10 8 7 12 12 C 1.76195 * 100.00047 * 179.97438 * 11 10 8 13 13 H 1.07998 * 120.00588 * 359.97438 * 12 11 10 14 14 C 1.38807 * 119.99845 * 179.97438 * 12 11 10 15 15 N 1.31630 * 119.99747 * 179.97438 * 14 12 11 16 16 Si 1.86791 * 119.99965 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47225 * 90.00219 * 16 14 12 18 18 H 1.48504 * 109.47213 * 210.00013 * 16 14 12 19 19 H 1.48505 * 109.47681 * 330.00367 * 16 14 12 20 20 C 1.53035 * 109.53930 * 298.61755 * 5 4 2 21 21 C 1.53194 * 109.31134 * 61.36777 * 20 5 4 22 22 N 1.46921 * 108.77425 * 305.36594 * 21 20 5 23 23 C 1.34777 * 120.62601 * 233.63155 * 22 21 20 24 24 O 1.21355 * 119.99888 * 172.16580 * 23 22 21 25 25 C 1.49449 * 120.00280 * 352.15614 * 23 22 21 26 26 N 1.34779 * 120.00195 * 173.45162 * 25 23 22 27 27 O 1.21354 * 120.00224 * 353.45014 * 25 23 22 28 28 H 1.09007 * 109.47363 * 292.96140 * 1 2 3 29 29 H 1.08997 * 109.47194 * 52.96373 * 1 2 3 30 30 H 1.09003 * 109.46987 * 172.96554 * 1 2 3 31 31 H 1.09003 * 109.49696 * 54.47252 * 4 2 1 32 32 H 1.09002 * 109.50216 * 294.40389 * 4 2 1 33 33 H 0.96996 * 119.99836 * 334.99635 * 7 5 4 34 34 H 1.09007 * 109.47247 * 299.99654 * 10 8 7 35 35 H 1.08998 * 109.47160 * 59.99734 * 10 8 7 36 36 H 0.97003 * 119.99802 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.49944 * 181.31641 * 20 5 4 38 38 H 1.08995 * 109.50158 * 301.41597 * 20 5 4 39 39 H 1.09005 * 109.58215 * 65.15056 * 21 20 5 40 40 H 1.08998 * 109.58507 * 185.57404 * 21 20 5 41 41 H 0.96996 * 120.00168 * 359.97438 * 26 25 23 42 42 H 0.96997 * 120.00037 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7293 1.2455 5 6 3.5675 -0.8478 1.1710 6 1 3.9374 -1.3444 2.0681 7 7 4.1570 0.4899 1.0754 8 6 5.4209 0.7008 1.4933 9 8 6.0701 -0.2169 1.9488 10 6 6.0275 2.0767 1.3944 11 16 7.7219 2.0362 2.0297 12 6 8.1751 3.7234 1.8004 13 1 7.4676 4.4196 1.3749 14 6 9.4416 4.1577 2.1665 15 7 9.7803 5.4180 1.9947 16 14 10.6652 2.9538 2.9030 17 1 11.4638 2.3325 1.8161 18 1 11.5712 3.6752 3.8326 19 1 9.9335 1.8964 3.6459 20 6 3.9576 -1.6659 -0.0621 21 6 3.4663 -0.9476 -1.3229 22 7 2.0238 -0.7001 -1.1944 23 6 1.1691 -1.1079 -2.1534 24 8 -0.0283 -1.0268 -1.9735 25 6 1.6959 -1.6598 -3.4385 26 7 0.8480 -2.1889 -4.3426 27 8 2.8873 -1.6315 -3.6679 28 1 -0.3634 0.4009 0.9463 29 1 -0.3633 0.6190 -0.8203 30 1 -0.3633 -1.0200 -0.1259 31 1 1.6029 -1.7252 1.2915 32 1 1.7655 -0.1670 2.1369 33 1 3.6377 1.2238 0.7114 34 1 6.0383 2.3951 0.3520 35 1 5.4353 2.7779 1.9824 36 1 10.6652 5.7217 2.2509 37 1 5.0419 -1.7698 -0.1018 38 1 3.4990 -2.6530 -0.0039 39 1 3.9917 0.0014 -1.4308 40 1 3.6536 -1.5726 -2.1960 41 1 -0.1042 -2.2118 -4.1592 42 1 1.1900 -2.5474 -5.1765 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074843456.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:43 Heat of formation + Delta-G solvation = -79.288654 kcal Electronic energy + Delta-G solvation = -26270.389692 eV Core-core repulsion = 22377.876131 eV Total energy + Delta-G solvation = -3892.513561 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.58445 -39.89027 -38.97222 -37.68635 -34.83357 -33.90880 -33.06387 -32.44013 -31.72221 -29.06191 -27.82079 -25.76029 -25.60603 -24.36473 -22.58965 -21.48238 -20.54468 -19.56512 -18.04784 -17.91046 -17.54525 -16.60235 -16.55080 -16.40201 -16.01147 -15.77649 -15.21013 -14.96642 -14.79713 -14.53792 -14.16955 -14.06168 -13.86904 -13.53543 -13.34815 -12.94876 -12.79839 -12.73117 -12.39671 -12.05855 -11.95018 -11.70704 -11.45257 -11.26827 -11.01568 -11.00884 -10.70765 -10.59007 -10.28451 -9.85902 -9.53220 -9.30311 -9.12253 -9.00437 -8.89553 -8.50479 -6.91884 -6.29017 -4.00679 0.99448 2.01545 2.75072 2.77876 2.95168 3.23673 3.29860 3.34060 3.50321 3.64748 4.02633 4.32828 4.34024 4.43421 4.56684 4.71934 4.84372 4.88777 4.95258 5.10070 5.12351 5.26368 5.36444 5.42730 5.53380 5.62175 5.65216 5.75023 5.77694 5.84063 5.90397 5.98526 6.00934 6.16173 6.30379 6.48139 6.53668 6.83977 7.35542 7.56929 7.60218 7.94069 8.41661 8.47082 9.17171 10.80266 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.021714 B = 0.002617 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.200716 B =10696.356056 C =11026.954635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.137 3.863 3 H 0.078 0.922 4 C -0.137 4.137 5 C 0.145 3.855 6 H 0.094 0.906 7 N -0.732 5.732 8 C 0.533 3.467 9 O -0.517 6.517 10 C -0.125 4.125 11 S -0.141 6.141 12 C -0.521 4.521 13 H 0.088 0.912 14 C 0.095 3.905 15 N -0.881 5.881 16 Si 0.857 3.143 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.235 1.235 20 C -0.146 4.146 21 C 0.068 3.932 22 N -0.572 5.572 23 C 0.507 3.493 24 O -0.518 6.518 25 C 0.510 3.490 26 N -0.821 5.821 27 O -0.510 6.510 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.396 0.604 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.271 0.729 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.141 0.859 41 H 0.414 0.586 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.751 -15.377 -9.319 28.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.035 3.965 3 H 0.096 0.904 4 C -0.176 4.176 5 C 0.040 3.960 6 H 0.112 0.888 7 N -0.387 5.387 8 C 0.319 3.681 9 O -0.392 6.392 10 C -0.276 4.276 11 S 0.086 5.914 12 C -0.669 4.669 13 H 0.106 0.894 14 C -0.114 4.114 15 N -0.517 5.517 16 Si 0.682 3.318 17 H -0.192 1.192 18 H -0.200 1.200 19 H -0.159 1.159 20 C -0.185 4.185 21 C -0.053 4.053 22 N -0.305 5.305 23 C 0.289 3.711 24 O -0.395 6.395 25 C 0.290 3.710 26 N -0.387 5.387 27 O -0.386 6.386 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.231 0.769 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.158 0.842 41 H 0.244 0.756 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -21.369 -16.608 -8.403 28.338 hybrid contribution -0.509 1.157 -0.681 1.435 sum -21.878 -15.452 -9.084 28.282 Atomic orbital electron populations 1.22273 0.91942 1.04518 1.01076 1.21483 0.96281 0.95266 0.83516 0.90392 1.22308 0.94844 1.02580 0.97841 1.20873 0.91926 0.84014 0.99236 0.88831 1.46117 1.14913 1.11161 1.66559 1.20278 0.80926 0.90443 0.76488 1.90698 1.60370 1.44526 1.43580 1.23288 1.02501 0.96125 1.05656 1.84778 1.08219 1.16035 1.82409 1.22318 1.03391 0.92373 1.48812 0.89415 1.24720 0.97351 0.95087 0.94193 1.69941 1.21110 1.14645 1.46020 0.86729 0.82181 0.82277 0.80620 1.19206 1.19969 1.15917 1.22336 1.02992 0.98857 0.94323 1.22936 0.77611 1.03232 1.01543 1.48092 1.08563 1.54880 1.18994 1.19961 0.86471 0.79876 0.84763 1.90824 1.14979 1.54539 1.79157 1.20397 0.86405 0.78397 0.85832 1.43559 1.12086 1.61869 1.21201 1.90587 1.15145 1.55850 1.77002 0.93097 0.91408 0.90098 0.89779 0.89506 0.76886 0.88564 0.88527 0.91943 0.89354 0.90877 0.90717 0.84191 0.75598 0.75659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 7.61 37.16 0.28 -0.85 16 2 C 0.14 1.11 3.20 -67.56 -0.22 0.89 16 3 H 0.08 0.60 6.64 -51.93 -0.34 0.25 16 4 C -0.14 -1.06 5.07 -26.61 -0.13 -1.19 16 5 C 0.14 1.49 2.78 -67.89 -0.19 1.30 16 6 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 7 N -0.73 -8.64 4.26 -53.76 -0.23 -8.87 16 8 C 0.53 8.97 7.81 -10.99 -0.09 8.88 16 9 O -0.52 -10.62 15.53 5.55 0.09 -10.53 16 10 C -0.13 -2.36 6.16 36.00 0.22 -2.14 16 11 S -0.14 -3.53 18.55 -107.50 -1.99 -5.52 16 12 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 13 H 0.09 2.63 8.03 -52.49 -0.42 2.20 16 14 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 15 N -0.88 -26.59 13.97 55.49 0.78 -25.81 16 16 Si 0.86 21.76 27.74 -169.99 -4.71 17.05 16 17 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 20 C -0.15 -1.48 5.77 -26.61 -0.15 -1.64 16 21 C 0.07 0.67 5.75 -3.71 -0.02 0.65 16 22 N -0.57 -5.18 2.97 -165.68 -0.49 -5.68 16 23 C 0.51 4.70 7.66 -11.59 -0.09 4.61 16 24 O -0.52 -5.13 11.92 5.49 0.07 -5.07 16 25 C 0.51 4.35 8.02 -11.58 -0.09 4.26 16 26 N -0.82 -3.95 8.87 30.91 0.27 -3.68 16 27 O -0.51 -5.65 13.99 5.49 0.08 -5.58 16 28 H 0.05 0.35 8.14 -51.92 -0.42 -0.08 16 29 H 0.07 0.62 7.08 -51.93 -0.37 0.25 16 30 H 0.08 0.74 6.41 -51.93 -0.33 0.41 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.40 3.82 6.87 -40.82 -0.28 3.54 16 34 H 0.10 1.70 8.14 -51.91 -0.42 1.28 16 35 H 0.10 1.70 8.14 -51.92 -0.42 1.27 16 36 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.81 7.74 -51.93 -0.40 0.41 16 40 H 0.14 1.52 4.26 -55.09 -0.23 1.28 16 41 H 0.41 1.39 8.32 -40.82 -0.34 1.05 16 42 H 0.41 1.25 8.93 -40.82 -0.36 0.88 16 LS Contribution 351.25 15.07 5.29 5.29 Total: -1.00 -35.05 351.25 -6.72 -41.77 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -5.59 Total: 3.81 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -0.26 Total: 2.81 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.33 Total: -44.04 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: 0.23 Total: -21.17 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.05 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.05 -6.72 -41.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074843456.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.520 kcal (2) G-P(sol) polarization free energy of solvation -35.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds