Wall clock time and date at job start Tue Mar 31 2020 07:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.70303 * 2 1 4 4 C 1.53192 * 109.58877 * 120.35102 * 2 1 3 5 5 C 1.53039 * 109.31558 * 174.42244 * 4 2 1 6 6 H 1.09000 * 109.45939 * 58.65607 * 5 4 2 7 7 N 1.46493 * 109.46343 * 178.61726 * 5 4 2 8 8 C 1.34779 * 120.00362 * 205.07147 * 7 5 4 9 9 O 1.21278 * 119.99693 * 359.97438 * 8 7 5 10 10 C 1.50705 * 120.00151 * 180.02562 * 8 7 5 11 11 S 1.80994 * 109.46805 * 179.97438 * 10 8 7 12 12 C 1.76202 * 99.99971 * 179.97438 * 11 10 8 13 13 H 1.08004 * 119.99402 * 0.02562 * 12 11 10 14 14 C 1.38800 * 120.00517 * 179.97438 * 12 11 10 15 15 N 1.31632 * 119.99445 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00316 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47245 * 89.99768 * 16 14 12 18 18 H 1.48497 * 109.47060 * 210.00122 * 16 14 12 19 19 H 1.48508 * 109.47012 * 329.99838 * 16 14 12 20 20 C 1.53045 * 109.53767 * 298.64020 * 5 4 2 21 21 C 1.53183 * 109.31434 * 61.36192 * 20 5 4 22 22 N 1.46925 * 108.77683 * 305.36542 * 21 20 5 23 23 C 1.34777 * 120.63392 * 233.63081 * 22 21 20 24 24 O 1.21345 * 120.00262 * 172.46326 * 23 22 21 25 25 C 1.49454 * 119.99731 * 352.46219 * 23 22 21 26 26 N 1.34775 * 120.00044 * 173.49851 * 25 23 22 27 27 O 1.21350 * 119.99780 * 353.49427 * 25 23 22 28 28 H 1.09003 * 109.46874 * 172.11335 * 1 2 3 29 29 H 1.09005 * 109.46787 * 292.11446 * 1 2 3 30 30 H 1.08997 * 109.47153 * 52.11072 * 1 2 3 31 31 H 1.09002 * 109.49465 * 54.47079 * 4 2 1 32 32 H 1.08996 * 109.49827 * 294.37476 * 4 2 1 33 33 H 0.97004 * 119.99747 * 25.06985 * 7 5 4 34 34 H 1.09002 * 109.46613 * 299.99363 * 10 8 7 35 35 H 1.08997 * 109.47228 * 59.99690 * 10 8 7 36 36 H 0.96997 * 120.00047 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.49673 * 181.31686 * 20 5 4 38 38 H 1.09006 * 109.49583 * 301.41004 * 20 5 4 39 39 H 1.08998 * 109.59015 * 65.15418 * 21 20 5 40 40 H 1.09003 * 109.59048 * 185.43481 * 21 20 5 41 41 H 0.97003 * 120.00235 * 359.97438 * 26 25 23 42 42 H 0.97004 * 120.00397 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0436 -0.7293 1.2455 5 6 3.5675 -0.8479 1.1702 6 1 4.0062 0.1475 1.0993 7 7 4.0653 -1.5156 2.3754 8 6 5.3291 -1.3009 2.7916 9 8 6.0544 -0.5552 2.1681 10 6 5.8413 -1.9882 4.0311 11 16 7.5593 -1.5007 4.3250 12 6 7.8928 -2.4223 5.7893 13 1 7.1246 -3.0472 6.2206 14 6 9.1427 -2.3462 6.3878 15 7 10.0790 -1.5849 5.8618 16 14 9.4964 -3.3238 7.9398 17 1 10.0286 -4.6605 7.5722 18 1 10.4991 -2.6008 8.7625 19 1 8.2424 -3.4873 8.7183 20 6 3.9570 -1.6656 -0.0634 21 6 3.4651 -0.9470 -1.3236 22 7 2.0226 -0.6996 -1.1944 23 6 1.1674 -1.1070 -2.1531 24 8 -0.0298 -1.0209 -1.9747 25 6 1.6935 -1.6649 -3.4359 26 7 0.8445 -2.1926 -4.3398 27 8 2.8853 -1.6425 -3.6636 28 1 -0.3633 -1.0180 -0.1410 29 1 -0.3633 0.3869 0.9521 30 1 -0.3633 0.6311 -0.8110 31 1 1.6030 -1.7252 1.2914 32 1 1.7661 -0.1667 2.1368 33 1 3.4852 -2.1122 2.8739 34 1 5.2298 -1.6989 4.8859 35 1 5.7886 -3.0685 3.8956 36 1 10.9524 -1.5313 6.2802 37 1 5.0413 -1.7695 -0.1036 38 1 3.4984 -2.6528 -0.0052 39 1 3.9903 0.0020 -1.4317 40 1 3.6542 -1.5706 -2.1974 41 1 -0.1081 -2.2108 -4.1576 42 1 1.1859 -2.5544 -5.1725 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074843457.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:03 Heat of formation + Delta-G solvation = -82.188857 kcal Electronic energy + Delta-G solvation = -25744.659065 eV Core-core repulsion = 21852.019742 eV Total energy + Delta-G solvation = -3892.639323 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.51773 -39.69327 -38.98644 -37.66299 -34.90840 -34.00377 -33.03240 -32.43214 -31.62886 -29.05698 -27.65814 -25.65456 -25.46783 -24.09675 -22.60965 -21.23646 -20.33828 -20.01376 -18.14144 -17.82081 -17.54530 -16.53024 -16.48287 -16.29134 -15.99056 -15.85195 -15.00053 -14.80986 -14.77238 -14.69495 -14.25252 -14.01532 -13.85805 -13.33914 -13.17947 -12.92343 -12.71448 -12.55037 -12.30910 -12.12956 -11.91610 -11.60116 -11.38720 -11.06759 -11.02915 -10.87792 -10.75238 -10.70422 -10.29790 -9.82037 -9.51359 -9.27543 -9.07284 -9.02769 -8.86974 -8.24095 -6.50344 -6.22047 -3.92572 0.99373 2.02275 2.76749 3.00929 3.07525 3.22081 3.23925 3.27953 3.31818 3.68479 4.02611 4.20091 4.37037 4.58445 4.60348 4.87662 4.93709 5.00055 5.13110 5.14358 5.18980 5.33895 5.41944 5.52886 5.60396 5.64194 5.68563 5.77814 5.82217 5.88173 6.03065 6.09515 6.13545 6.16390 6.31619 6.48050 6.62642 6.84777 7.35736 7.59184 7.60044 7.69717 8.34832 8.60213 9.23299 10.85371 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.029420 B = 0.002170 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.516361 B =12901.938194 C =13353.696631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.143 3.857 3 H 0.083 0.917 4 C -0.137 4.137 5 C 0.145 3.855 6 H 0.090 0.910 7 N -0.735 5.735 8 C 0.533 3.467 9 O -0.516 6.516 10 C -0.154 4.154 11 S -0.060 6.060 12 C -0.535 4.535 13 H 0.072 0.928 14 C 0.073 3.927 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 C -0.145 4.145 21 C 0.069 3.931 22 N -0.573 5.573 23 C 0.507 3.493 24 O -0.518 6.518 25 C 0.510 3.490 26 N -0.821 5.821 27 O -0.510 6.510 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.397 0.603 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.144 0.856 41 H 0.414 0.586 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.052 -0.666 -17.175 28.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.040 3.960 3 H 0.101 0.899 4 C -0.176 4.176 5 C 0.040 3.960 6 H 0.108 0.892 7 N -0.389 5.389 8 C 0.319 3.681 9 O -0.390 6.390 10 C -0.304 4.304 11 S 0.167 5.833 12 C -0.684 4.684 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.197 1.197 20 C -0.184 4.184 21 C -0.053 4.053 22 N -0.306 5.306 23 C 0.289 3.711 24 O -0.395 6.395 25 C 0.290 3.710 26 N -0.387 5.387 27 O -0.387 6.387 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.231 0.769 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.161 0.839 41 H 0.244 0.756 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -21.481 0.816 -18.063 28.078 hybrid contribution -1.059 -1.945 1.790 2.847 sum -22.540 -1.129 -16.273 27.823 Atomic orbital electron populations 1.22283 0.91967 1.04592 1.00987 1.21444 0.96167 0.95477 0.82869 0.89926 1.22301 0.95017 1.02159 0.98129 1.20889 0.92892 0.97638 0.84625 0.89159 1.46074 1.14214 1.50029 1.28555 1.20324 0.80918 0.81183 0.85661 1.90700 1.55676 1.36101 1.56494 1.23537 1.06472 1.03193 0.97238 1.85393 1.01507 1.61827 1.34601 1.22866 1.01246 1.32141 1.12120 0.90953 1.24996 0.95095 0.95548 0.97982 1.70017 1.04110 1.36717 1.39424 0.86166 0.78241 0.79588 0.81490 1.20273 1.20750 1.19710 1.22368 1.02998 0.99272 0.93805 1.22958 0.77633 1.03185 1.01484 1.48115 1.08579 1.54867 1.19063 1.19956 0.86470 0.79872 0.84767 1.90820 1.14998 1.54630 1.79076 1.20399 0.86398 0.78397 0.85783 1.43561 1.12037 1.61778 1.21313 1.90570 1.15127 1.56032 1.76933 0.90019 0.93112 0.91456 0.90727 0.89570 0.76891 0.89265 0.89269 0.92180 0.89328 0.91525 0.90602 0.83931 0.75577 0.75655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 7.61 37.16 0.28 -0.88 16 2 C 0.14 1.21 3.49 -67.60 -0.24 0.98 16 3 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 4 C -0.14 -1.15 4.83 -26.61 -0.13 -1.28 16 5 C 0.14 1.62 2.42 -67.89 -0.16 1.46 16 6 H 0.09 1.19 7.58 -51.93 -0.39 0.79 16 7 N -0.74 -9.36 5.08 -53.77 -0.27 -9.63 16 8 C 0.53 9.62 7.81 -10.98 -0.09 9.54 16 9 O -0.52 -11.33 15.52 5.56 0.09 -11.25 16 10 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 11 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 12 C -0.54 -15.21 9.50 30.94 0.29 -14.91 16 13 H 0.07 1.94 7.80 -52.48 -0.41 1.54 16 14 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 15 N -0.87 -26.13 13.22 55.49 0.73 -25.39 16 16 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 C -0.15 -1.59 5.65 -26.61 -0.15 -1.75 16 21 C 0.07 0.69 6.01 -3.72 -0.02 0.67 16 22 N -0.57 -5.31 2.97 -165.73 -0.49 -5.80 16 23 C 0.51 4.70 7.66 -11.58 -0.09 4.61 16 24 O -0.52 -5.15 11.92 5.50 0.07 -5.08 16 25 C 0.51 4.28 8.03 -11.58 -0.09 4.19 16 26 N -0.82 -3.82 8.87 30.91 0.27 -3.55 16 27 O -0.51 -5.51 13.98 5.50 0.08 -5.43 16 28 H 0.08 0.77 6.35 -51.93 -0.33 0.44 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.61 7.12 -51.93 -0.37 0.24 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.40 3.96 8.60 -40.82 -0.35 3.61 16 34 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 35 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 36 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.14 1.52 4.24 -55.18 -0.23 1.29 16 41 H 0.41 1.34 8.32 -40.82 -0.34 1.00 16 42 H 0.41 1.17 8.93 -40.82 -0.36 0.80 16 LS Contribution 358.19 15.07 5.40 5.40 Total: -1.00 -35.52 358.19 -7.36 -42.89 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.73 Total: 3.55 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -0.27 Total: 1.79 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.24 Total: -44.38 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.23 Total: -21.76 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.52 -7.36 -42.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074843457.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.303 kcal (2) G-P(sol) polarization free energy of solvation -35.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds