Wall clock time and date at job start Tue Mar 31 2020 07:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.70282 * 2 1 4 4 C 1.53191 * 109.58678 * 239.63705 * 2 1 3 5 5 C 1.53045 * 109.31312 * 185.57821 * 4 2 1 6 6 H 1.09007 * 109.46026 * 301.35372 * 5 4 2 7 7 N 1.46491 * 109.46161 * 181.37536 * 5 4 2 8 8 C 1.34777 * 120.00144 * 154.97290 * 7 5 4 9 9 O 1.21281 * 119.99679 * 0.02562 * 8 7 5 10 10 C 1.50697 * 119.99980 * 180.02562 * 8 7 5 11 11 S 1.81008 * 109.46794 * 180.02562 * 10 8 7 12 12 C 1.76202 * 99.99701 * 179.97438 * 11 10 8 13 13 H 1.07995 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.38806 * 119.99806 * 179.97438 * 12 11 10 15 15 N 1.31629 * 119.99961 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99845 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47250 * 90.00258 * 16 14 12 18 18 H 1.48504 * 109.46888 * 209.99880 * 16 14 12 19 19 H 1.48498 * 109.47276 * 329.99518 * 16 14 12 20 20 C 1.53041 * 109.52326 * 61.36078 * 5 4 2 21 21 C 1.53168 * 109.32872 * 298.62745 * 20 5 4 22 22 N 1.46922 * 108.76734 * 54.64732 * 21 20 5 23 23 C 1.34774 * 120.63090 * 126.36505 * 22 21 20 24 24 O 1.21349 * 120.00252 * 187.38365 * 23 22 21 25 25 C 1.49449 * 119.99966 * 7.38631 * 23 22 21 26 26 N 1.34782 * 119.99898 * 187.12124 * 25 23 22 27 27 O 1.21348 * 120.00079 * 7.11786 * 25 23 22 28 28 H 1.09008 * 109.47035 * 177.48191 * 1 2 3 29 29 H 1.09002 * 109.47434 * 297.48201 * 1 2 3 30 30 H 1.08996 * 109.46905 * 57.48708 * 1 2 3 31 31 H 1.09005 * 109.49276 * 65.63429 * 4 2 1 32 32 H 1.08995 * 109.52797 * 305.54934 * 4 2 1 33 33 H 0.97001 * 119.99965 * 334.97643 * 7 5 4 34 34 H 1.08995 * 109.47470 * 299.99533 * 10 8 7 35 35 H 1.08991 * 109.47403 * 60.00485 * 10 8 7 36 36 H 0.97002 * 120.00115 * 180.02562 * 15 14 12 37 37 H 1.09001 * 109.49848 * 58.59738 * 20 5 4 38 38 H 1.08999 * 109.49377 * 178.69416 * 20 5 4 39 39 H 1.08997 * 109.59256 * 294.85962 * 21 20 5 40 40 H 1.08995 * 109.70138 * 174.50232 * 21 20 5 41 41 H 0.97001 * 119.99897 * 359.97438 * 26 25 23 42 42 H 0.97003 * 119.99341 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7295 -1.2453 5 6 3.5675 -0.8481 -1.1700 6 1 4.0062 0.1473 -1.0992 7 7 4.0652 -1.5162 -2.3750 8 6 5.3293 -1.3024 -2.7908 9 8 6.0549 -0.5571 -2.1670 10 6 5.8410 -1.9892 -4.0306 11 16 7.5598 -1.5030 -4.3238 12 6 7.8930 -2.4251 -5.7879 13 1 7.1245 -3.0487 -6.2200 14 6 9.1431 -2.3490 -6.3865 15 7 9.3919 -3.0374 -7.4804 16 14 10.4722 -1.2698 -5.6395 17 1 11.2626 -2.0620 -4.6634 18 1 11.3681 -0.7724 -6.7143 19 1 9.8425 -0.1168 -4.9470 20 6 3.9566 -1.6657 0.0639 21 6 3.4650 -0.9469 1.3239 22 7 2.0225 -0.6995 1.1946 23 6 1.1673 -1.1069 2.1533 24 8 -0.0299 -1.0182 1.9760 25 6 1.6933 -1.6678 3.4347 26 7 0.8452 -2.2068 4.3329 27 8 2.8841 -1.6381 3.6665 28 1 -0.3633 -1.0267 -0.0452 29 1 -0.3634 0.4742 0.9117 30 1 -0.3633 0.5523 -0.8666 31 1 1.7661 -0.1669 -2.1368 32 1 1.6030 -1.7254 -1.2918 33 1 3.4850 -2.1125 -2.8736 34 1 5.7875 -3.0695 -3.8960 35 1 5.2302 -1.6988 -4.8853 36 1 10.2656 -2.9846 -7.8985 37 1 3.4980 -2.6528 0.0057 38 1 5.0408 -1.7695 0.1044 39 1 3.9902 0.0020 1.4318 40 1 3.6520 -1.5696 2.1987 41 1 -0.1067 -2.2302 4.1477 42 1 1.1867 -2.5711 5.1645 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074843458.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:06 Heat of formation + Delta-G solvation = -82.126667 kcal Electronic energy + Delta-G solvation = -25801.715744 eV Core-core repulsion = 21909.079117 eV Total energy + Delta-G solvation = -3892.636627 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 5.78 seconds Orbital eigenvalues (eV) -41.55602 -39.77424 -39.04906 -37.72964 -34.98020 -34.04815 -33.07534 -32.44551 -31.71786 -29.18549 -27.72026 -25.70205 -25.58835 -24.16131 -22.65816 -21.30179 -20.42951 -20.06101 -18.18281 -17.85175 -17.58304 -16.58295 -16.55931 -16.40260 -16.02034 -15.91522 -15.11846 -14.97122 -14.82575 -14.71984 -14.31696 -13.96346 -13.87721 -13.43183 -13.24114 -12.93145 -12.80027 -12.70084 -12.37717 -12.26109 -12.01785 -11.61325 -11.45471 -11.27231 -11.01520 -10.95653 -10.75631 -10.59797 -10.33641 -9.86822 -9.60802 -9.35654 -9.06914 -9.01757 -8.95282 -8.50974 -6.92548 -6.29531 -4.01315 0.96265 1.98679 2.70799 2.77221 2.94370 3.19297 3.29516 3.33565 3.50089 3.63254 3.99487 4.31478 4.32671 4.54620 4.54996 4.71887 4.82004 4.88457 5.00941 5.09013 5.09616 5.19921 5.37254 5.39472 5.49041 5.57080 5.63723 5.73625 5.75356 5.77060 5.97223 5.99951 6.03651 6.12589 6.27291 6.44990 6.52928 6.80797 7.32426 7.56695 7.58799 7.93505 8.41023 8.46935 9.16614 10.79678 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.028007 B = 0.002286 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.526018 B =12243.556273 C =12764.376441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.143 3.857 3 H 0.084 0.916 4 C -0.138 4.138 5 C 0.145 3.855 6 H 0.091 0.909 7 N -0.733 5.733 8 C 0.532 3.468 9 O -0.518 6.518 10 C -0.125 4.125 11 S -0.141 6.141 12 C -0.522 4.522 13 H 0.088 0.912 14 C 0.095 3.905 15 N -0.880 5.880 16 Si 0.857 3.143 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.235 1.235 20 C -0.145 4.145 21 C 0.069 3.931 22 N -0.574 5.574 23 C 0.507 3.493 24 O -0.517 6.517 25 C 0.511 3.489 26 N -0.821 5.821 27 O -0.511 6.511 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.399 0.601 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.271 0.729 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.144 0.856 41 H 0.414 0.586 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.971 2.772 21.107 30.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.041 3.959 3 H 0.102 0.898 4 C -0.177 4.177 5 C 0.040 3.960 6 H 0.109 0.891 7 N -0.386 5.386 8 C 0.318 3.682 9 O -0.392 6.392 10 C -0.275 4.275 11 S 0.085 5.915 12 C -0.669 4.669 13 H 0.106 0.894 14 C -0.114 4.114 15 N -0.517 5.517 16 Si 0.682 3.318 17 H -0.192 1.192 18 H -0.200 1.200 19 H -0.159 1.159 20 C -0.184 4.184 21 C -0.052 4.052 22 N -0.307 5.307 23 C 0.289 3.711 24 O -0.394 6.394 25 C 0.290 3.710 26 N -0.387 5.387 27 O -0.387 6.387 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.233 0.767 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.161 0.839 41 H 0.244 0.756 42 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -20.465 4.132 21.862 30.230 hybrid contribution -0.606 -1.080 -0.772 1.460 sum -21.071 3.052 21.090 29.968 Atomic orbital electron populations 1.22298 0.91898 1.03496 1.02084 1.21445 0.96212 0.95457 0.82827 0.89833 1.22318 0.94903 1.02221 0.98253 1.20903 0.93005 0.97586 0.84519 0.89142 1.46036 1.14054 1.49963 1.28594 1.20295 0.81084 0.81201 0.85630 1.90698 1.55738 1.36230 1.56548 1.23284 1.03108 1.03527 0.97604 1.84787 1.07257 1.63235 1.36228 1.22317 1.02781 1.31648 1.10166 0.89404 1.24723 0.97759 0.94859 0.94024 1.69938 1.23265 1.39967 1.18515 0.86727 0.82476 0.82748 0.79853 1.19209 1.19954 1.15911 1.22362 1.02950 0.99336 0.93798 1.22948 0.77687 1.03146 1.01438 1.48121 1.08560 1.54832 1.19176 1.19953 0.86475 0.79963 0.84729 1.90823 1.14980 1.54134 1.79454 1.20390 0.86380 0.78456 0.85731 1.43563 1.12142 1.61343 1.21617 1.90569 1.15183 1.56287 1.76676 0.91290 0.90171 0.93111 0.89532 0.90671 0.76709 0.88535 0.88488 0.91938 0.91448 0.89385 0.90630 0.83945 0.75559 0.75639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 7.61 37.16 0.28 -0.83 16 2 C 0.14 1.15 3.49 -67.60 -0.24 0.92 16 3 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.14 -1.09 4.84 -26.61 -0.13 -1.22 16 5 C 0.15 1.53 2.42 -67.89 -0.16 1.37 16 6 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 7 N -0.73 -8.79 5.08 -53.77 -0.27 -9.06 16 8 C 0.53 9.06 7.81 -10.99 -0.09 8.98 16 9 O -0.52 -10.73 15.52 5.56 0.09 -10.64 16 10 C -0.12 -2.36 6.16 36.00 0.22 -2.13 16 11 S -0.14 -3.55 18.55 -107.50 -1.99 -5.55 16 12 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 13 H 0.09 2.63 8.03 -52.49 -0.42 2.20 16 14 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 15 N -0.88 -26.53 13.97 55.49 0.78 -25.75 16 16 Si 0.86 21.75 27.74 -169.99 -4.71 17.04 16 17 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 20 C -0.15 -1.51 5.65 -26.62 -0.15 -1.66 16 21 C 0.07 0.66 6.02 -3.73 -0.02 0.64 16 22 N -0.57 -5.09 2.97 -165.74 -0.49 -5.58 16 23 C 0.51 4.54 7.65 -11.59 -0.09 4.45 16 24 O -0.52 -4.99 11.92 5.50 0.07 -4.93 16 25 C 0.51 4.13 8.02 -11.58 -0.09 4.04 16 26 N -0.82 -3.63 8.87 30.90 0.27 -3.36 16 27 O -0.51 -5.35 13.99 5.50 0.08 -5.28 16 28 H 0.07 0.61 7.12 -51.92 -0.37 0.24 16 29 H 0.08 0.72 6.34 -51.93 -0.33 0.39 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.40 3.73 8.60 -40.82 -0.35 3.38 16 34 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 35 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 36 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.14 1.46 4.24 -55.16 -0.23 1.23 16 41 H 0.41 1.25 8.32 -40.82 -0.34 0.91 16 42 H 0.41 1.08 8.93 -40.82 -0.36 0.71 16 LS Contribution 355.51 15.07 5.36 5.36 Total: -1.00 -35.20 355.51 -6.85 -42.05 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.76 Total: 3.14 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -0.25 Total: 2.57 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.28 Total: -43.76 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: 0.23 Total: -20.85 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.04 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.20 -6.85 -42.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074843458.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.079 kcal (2) G-P(sol) polarization free energy of solvation -35.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.78 seconds