Wall clock time and date at job start Tue Mar 31 2020 07:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.70452 * 2 1 4 4 C 1.53194 * 109.58361 * 239.64961 * 2 1 3 5 5 C 1.53109 * 109.33021 * 294.84420 * 4 2 1 6 6 H 1.09003 * 109.44365 * 58.65544 * 5 4 2 7 7 N 1.46501 * 109.50227 * 178.62722 * 5 4 2 8 8 C 1.34777 * 119.99978 * 205.05354 * 7 5 4 9 9 O 1.21347 * 120.00006 * 0.02562 * 8 7 5 10 10 C 1.49449 * 119.99837 * 180.02562 * 8 7 5 11 11 N 1.34777 * 119.99837 * 180.02562 * 10 8 7 12 12 O 1.21347 * 120.00156 * 359.97438 * 10 8 7 13 13 C 1.53036 * 109.50477 * 298.65929 * 5 4 2 14 14 C 1.53187 * 109.33909 * 61.34678 * 13 5 4 15 15 N 1.46925 * 109.59020 * 120.35861 * 2 1 3 16 16 C 1.34772 * 120.63360 * 246.15427 * 15 2 1 17 17 O 1.21277 * 119.99811 * 0.02562 * 16 15 2 18 18 C 1.50704 * 120.00006 * 180.02562 * 16 15 2 19 19 S 1.80999 * 109.47111 * 180.02562 * 18 16 15 20 20 C 1.76197 * 100.00038 * 180.02562 * 19 18 16 21 21 H 1.07997 * 119.99779 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99856 * 180.02562 * 20 19 18 23 23 N 1.31626 * 120.00009 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99972 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.46929 * 90.00277 * 24 22 20 26 26 H 1.48505 * 109.47152 * 209.99878 * 24 22 20 27 27 H 1.48492 * 109.47346 * 330.00155 * 24 22 20 28 28 H 1.09001 * 109.46844 * 299.64072 * 1 2 3 29 29 H 1.08998 * 109.47199 * 59.63538 * 1 2 3 30 30 H 1.08999 * 109.47095 * 179.64146 * 1 2 3 31 31 H 1.09002 * 109.49873 * 54.79750 * 4 2 1 32 32 H 1.09001 * 109.49841 * 174.89767 * 4 2 1 33 33 H 0.96998 * 120.00039 * 25.06422 * 7 5 4 34 34 H 0.96998 * 119.99984 * 0.02562 * 11 10 8 35 35 H 0.97000 * 120.00214 * 179.97438 * 11 10 8 36 36 H 1.09002 * 109.49886 * 301.37799 * 13 5 4 37 37 H 1.09000 * 109.49395 * 181.31276 * 13 5 4 38 38 H 1.09004 * 109.58908 * 65.13475 * 14 13 5 39 39 H 1.09003 * 109.58748 * 185.41538 * 14 13 5 40 40 H 1.09001 * 109.47103 * 299.99900 * 18 16 15 41 41 H 1.08999 * 109.47147 * 60.00424 * 18 16 15 42 42 H 0.97000 * 120.00492 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 1.6415 -2.2048 -1.1707 6 1 0.5565 -2.2821 -1.0999 7 7 2.1023 -2.8990 -2.3757 8 6 1.4742 -4.0166 -2.7913 9 8 0.5266 -4.4477 -2.1677 10 6 1.9447 -4.7251 -4.0202 11 7 1.3162 -5.8425 -4.4361 12 8 2.8919 -4.2938 -4.6441 13 6 2.2800 -2.8464 0.0632 14 6 1.7692 -2.1411 1.3235 15 7 2.0226 -0.6996 1.1944 16 6 2.6946 -0.0319 2.1531 17 8 2.8973 1.1579 2.0348 18 6 3.1940 -0.7639 3.3721 19 16 4.0492 0.3980 4.4652 20 6 4.5145 -0.6935 5.7678 21 1 4.2515 -1.7396 5.7156 22 6 5.2180 -0.2084 6.8616 23 7 5.5652 -1.0236 7.8350 24 14 5.6722 1.6012 6.9522 25 1 4.5857 2.3507 7.6329 26 1 6.9354 1.7569 7.7174 27 1 5.8564 2.1348 5.5788 28 1 -0.3633 0.5083 0.8932 29 1 -0.3633 0.5195 -0.8867 30 1 -0.3633 -1.0276 -0.0064 31 1 1.6074 -0.2783 -2.1369 32 1 3.1297 -0.6503 -1.2915 33 1 2.8596 -2.5543 -2.8743 34 1 0.5583 -6.1866 -3.9380 35 1 1.6213 -6.3022 -5.2339 36 1 3.3640 -2.7475 0.0050 37 1 2.0127 -3.9023 0.1036 38 1 0.6987 -2.3157 1.4315 39 1 2.2927 -2.5295 2.1972 40 1 2.3500 -1.2062 3.9015 41 1 3.8838 -1.5505 3.0664 42 1 6.0572 -0.6848 8.5992 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075143583.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:33 Heat of formation + Delta-G solvation = -110.242091 kcal Electronic energy + Delta-G solvation = -25806.956046 eV Core-core repulsion = 21913.100243 eV Total energy + Delta-G solvation = -3893.855803 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.18897 -40.24841 -38.86224 -37.59856 -35.30508 -34.03846 -33.03223 -32.44828 -31.51108 -29.13592 -27.98337 -25.91678 -25.61860 -23.92362 -22.84705 -21.11862 -20.84560 -19.41079 -18.44735 -17.90863 -17.60227 -16.97090 -16.61898 -16.21937 -15.81763 -15.72390 -15.32258 -14.97046 -14.68247 -14.45468 -14.34783 -14.02139 -13.92136 -13.50239 -13.24605 -13.20362 -12.78308 -12.43103 -12.29619 -12.14248 -12.04289 -11.79033 -11.43843 -11.40710 -11.25975 -11.01744 -10.68977 -10.58519 -10.40831 -10.14131 -9.86672 -9.66399 -9.46147 -9.01342 -8.69432 -8.50289 -6.93249 -6.29779 -4.01678 0.95556 2.01398 2.65983 2.75844 2.89393 3.14115 3.32488 3.38868 3.49686 3.56815 4.08700 4.25083 4.32141 4.41233 4.56600 4.70132 4.74714 4.86327 4.99848 5.09265 5.13344 5.17819 5.26078 5.31518 5.42991 5.52322 5.62347 5.66999 5.72668 5.76198 5.86360 5.89934 5.97083 5.99250 6.08036 6.40613 6.53842 6.83791 7.32287 7.41360 7.54142 7.93185 8.39717 8.40728 9.16393 10.79417 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.022021 B = 0.002472 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.232861 B =11325.846069 C =11933.651166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.144 3.856 3 H 0.108 0.892 4 C -0.137 4.137 5 C 0.142 3.858 6 H 0.099 0.901 7 N -0.693 5.693 8 C 0.507 3.493 9 O -0.518 6.518 10 C 0.513 3.487 11 N -0.822 5.822 12 O -0.521 6.521 13 C -0.146 4.146 14 C 0.110 3.890 15 N -0.615 5.615 16 C 0.536 3.464 17 O -0.518 6.518 18 C -0.122 4.122 19 S -0.143 6.143 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.413 0.587 34 H 0.415 0.585 35 H 0.411 0.589 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.566 -7.753 -24.581 28.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.040 3.960 3 H 0.126 0.874 4 C -0.176 4.176 5 C 0.038 3.962 6 H 0.117 0.883 7 N -0.346 5.346 8 C 0.287 3.713 9 O -0.394 6.394 10 C 0.292 3.708 11 N -0.389 5.389 12 O -0.397 6.397 13 C -0.186 4.186 14 C -0.014 4.014 15 N -0.351 5.351 16 C 0.324 3.676 17 O -0.392 6.392 18 C -0.273 4.273 19 S 0.084 5.916 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.249 0.751 34 H 0.245 0.755 35 H 0.244 0.756 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.226 -5.893 -24.386 27.485 hybrid contribution 0.182 -1.185 0.099 1.203 sum -11.045 -7.078 -24.287 27.604 Atomic orbital electron populations 1.22191 0.94863 1.02423 1.02789 1.21023 0.94089 0.97873 0.83053 0.87434 1.22254 1.02721 0.93592 0.98996 1.21225 1.00586 0.91221 0.83128 0.88297 1.45917 1.34555 1.25872 1.28211 1.20051 0.83669 0.82123 0.85496 1.90786 1.27027 1.65111 1.56428 1.20170 0.83140 0.81942 0.85572 1.43537 1.36038 1.27515 1.31771 1.90836 1.26965 1.65500 1.56362 1.22342 1.01740 1.00536 0.93943 1.21681 1.01496 0.79873 0.98328 1.48196 1.57159 1.08947 1.20845 1.20297 0.76623 0.87363 0.83323 1.90687 1.55815 1.14966 1.77762 1.23322 1.03876 1.03266 0.96806 1.84794 1.70747 1.15155 1.20942 1.22302 1.42188 0.97311 1.05032 0.89396 1.24715 0.94040 0.98363 0.94209 1.69934 1.37647 1.35394 1.08691 0.86733 0.78959 0.84998 0.81148 1.19210 1.19959 1.15929 0.91725 0.91443 0.92124 0.89845 0.90352 0.75052 0.75484 0.75630 0.90627 0.89979 0.90909 0.88561 0.88504 0.88496 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.03 37.16 0.34 -1.10 16 2 C 0.14 1.49 3.21 -67.60 -0.22 1.28 16 3 H 0.11 1.33 7.01 -51.93 -0.36 0.96 16 4 C -0.14 -1.08 5.03 -26.57 -0.13 -1.22 16 5 C 0.14 1.14 2.21 -67.85 -0.15 0.99 16 6 H 0.10 0.85 5.93 -51.93 -0.31 0.54 16 7 N -0.69 -5.29 5.07 -54.16 -0.27 -5.57 16 8 C 0.51 4.35 7.85 -11.59 -0.09 4.26 16 9 O -0.52 -5.37 16.14 5.50 0.09 -5.28 16 10 C 0.51 4.06 8.16 -11.59 -0.09 3.96 16 11 N -0.82 -3.68 8.87 30.90 0.27 -3.41 16 12 O -0.52 -5.50 17.31 5.50 0.10 -5.40 16 13 C -0.15 -1.29 5.65 -26.62 -0.15 -1.44 16 14 C 0.11 1.11 5.92 -3.71 -0.02 1.08 16 15 N -0.62 -7.72 2.68 -165.22 -0.44 -8.16 16 16 C 0.54 9.30 7.72 -10.99 -0.08 9.21 16 17 O -0.52 -10.83 15.27 5.56 0.08 -10.74 16 18 C -0.12 -2.32 4.50 36.01 0.16 -2.16 16 19 S -0.14 -3.58 18.55 -107.50 -1.99 -5.58 16 20 C -0.52 -14.86 10.04 30.94 0.31 -14.55 16 21 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 22 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 23 N -0.88 -26.43 13.97 55.49 0.78 -25.66 16 24 Si 0.86 21.69 27.74 -169.99 -4.71 16.97 16 25 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 26 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.49 5.72 -51.93 -0.30 0.19 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.41 2.81 8.08 -40.82 -0.33 2.48 16 34 H 0.41 1.34 8.30 -40.82 -0.34 1.00 16 35 H 0.41 1.08 8.93 -40.82 -0.36 0.72 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.65 7.50 -51.93 -0.39 0.26 16 39 H 0.10 1.01 5.95 -51.93 -0.31 0.70 16 40 H 0.10 1.72 7.94 -51.91 -0.41 1.31 16 41 H 0.10 1.72 7.70 -51.92 -0.40 1.32 16 42 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 359.61 15.07 5.42 5.42 Total: -1.00 -35.90 359.61 -6.54 -42.44 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.63 Total: 1.96 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -0.23 Total: 2.99 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.33 Total: -42.79 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: 0.27 Total: -21.43 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.97 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.90 -6.54 -42.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075143583.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.799 kcal (2) G-P(sol) polarization free energy of solvation -35.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds