Wall clock time and date at job start Tue Mar 31 2020 07:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.70452 * 2 1 4 4 C 1.53194 * 109.58361 * 239.64961 * 2 1 3 5 5 C 1.53109 * 109.33021 * 294.84420 * 4 2 1 6 6 H 1.09003 * 109.44365 * 58.65544 * 5 4 2 7 7 N 1.46501 * 109.50227 * 178.62722 * 5 4 2 8 8 C 1.34777 * 119.99978 * 205.05354 * 7 5 4 9 9 O 1.21347 * 120.00006 * 0.02562 * 8 7 5 10 10 C 1.49449 * 119.99837 * 180.02562 * 8 7 5 11 11 N 1.34777 * 119.99837 * 180.02562 * 10 8 7 12 12 O 1.21347 * 120.00156 * 359.97438 * 10 8 7 13 13 C 1.53036 * 109.50477 * 298.65929 * 5 4 2 14 14 C 1.53187 * 109.33909 * 61.34678 * 13 5 4 15 15 N 1.46925 * 109.59020 * 120.35861 * 2 1 3 16 16 C 1.34772 * 120.63360 * 246.15427 * 15 2 1 17 17 O 1.21277 * 119.99811 * 0.02562 * 16 15 2 18 18 C 1.50704 * 120.00006 * 180.02562 * 16 15 2 19 19 S 1.80999 * 109.47111 * 180.02562 * 18 16 15 20 20 C 1.76197 * 100.00038 * 180.02562 * 19 18 16 21 21 H 1.07997 * 119.99779 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99856 * 180.02562 * 20 19 18 23 23 N 1.31626 * 120.00009 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99972 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.46929 * 90.00277 * 24 22 20 26 26 H 1.48505 * 109.47152 * 209.99878 * 24 22 20 27 27 H 1.48492 * 109.47346 * 330.00155 * 24 22 20 28 28 H 1.09001 * 109.46844 * 299.64072 * 1 2 3 29 29 H 1.08998 * 109.47199 * 59.63538 * 1 2 3 30 30 H 1.08999 * 109.47095 * 179.64146 * 1 2 3 31 31 H 1.09002 * 109.49873 * 54.79750 * 4 2 1 32 32 H 1.09001 * 109.49841 * 174.89767 * 4 2 1 33 33 H 0.96998 * 120.00039 * 25.06422 * 7 5 4 34 34 H 0.96998 * 119.99984 * 0.02562 * 11 10 8 35 35 H 0.97000 * 120.00214 * 179.97438 * 11 10 8 36 36 H 1.09002 * 109.49886 * 301.37799 * 13 5 4 37 37 H 1.09000 * 109.49395 * 181.31276 * 13 5 4 38 38 H 1.09004 * 109.58908 * 65.13475 * 14 13 5 39 39 H 1.09003 * 109.58748 * 185.41538 * 14 13 5 40 40 H 1.09001 * 109.47103 * 299.99900 * 18 16 15 41 41 H 1.08999 * 109.47147 * 60.00424 * 18 16 15 42 42 H 0.97000 * 120.00492 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 1.6415 -2.2048 -1.1707 6 1 0.5565 -2.2821 -1.0999 7 7 2.1023 -2.8990 -2.3757 8 6 1.4742 -4.0166 -2.7913 9 8 0.5266 -4.4477 -2.1677 10 6 1.9447 -4.7251 -4.0202 11 7 1.3162 -5.8425 -4.4361 12 8 2.8919 -4.2938 -4.6441 13 6 2.2800 -2.8464 0.0632 14 6 1.7692 -2.1411 1.3235 15 7 2.0226 -0.6996 1.1944 16 6 2.6946 -0.0319 2.1531 17 8 2.8973 1.1579 2.0348 18 6 3.1940 -0.7639 3.3721 19 16 4.0492 0.3980 4.4652 20 6 4.5145 -0.6935 5.7678 21 1 4.2515 -1.7396 5.7156 22 6 5.2180 -0.2084 6.8616 23 7 5.5652 -1.0236 7.8350 24 14 5.6722 1.6012 6.9522 25 1 4.5857 2.3507 7.6329 26 1 6.9354 1.7569 7.7174 27 1 5.8564 2.1348 5.5788 28 1 -0.3633 0.5083 0.8932 29 1 -0.3633 0.5195 -0.8867 30 1 -0.3633 -1.0276 -0.0064 31 1 1.6074 -0.2783 -2.1369 32 1 3.1297 -0.6503 -1.2915 33 1 2.8596 -2.5543 -2.8743 34 1 0.5583 -6.1866 -3.9380 35 1 1.6213 -6.3022 -5.2339 36 1 3.3640 -2.7475 0.0050 37 1 2.0127 -3.9023 0.1036 38 1 0.6987 -2.3157 1.4315 39 1 2.2927 -2.5295 2.1972 40 1 2.3500 -1.2062 3.9015 41 1 3.8838 -1.5505 3.0664 42 1 6.0572 -0.6848 8.5992 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075143583.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:30 Heat of formation + Delta-G solvation = -139.670998 kcal Electronic energy + Delta-G solvation = -25808.232179 eV Core-core repulsion = 21913.100243 eV Total energy + Delta-G solvation = -3895.131936 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 17.27 seconds Orbital eigenvalues (eV) -41.92191 -41.22068 -39.64447 -38.61902 -36.11191 -34.67531 -34.61979 -33.94859 -32.36243 -30.50791 -28.79035 -27.85101 -26.57903 -24.73215 -23.66344 -22.14422 -21.49059 -20.20490 -19.77315 -19.13898 -18.57001 -18.03290 -17.25798 -17.16718 -16.92924 -16.82415 -16.55818 -16.49803 -15.82719 -15.34736 -15.20138 -15.07951 -14.95744 -14.79508 -14.44175 -14.33555 -14.07875 -13.48751 -13.33243 -13.23400 -13.03709 -13.01152 -12.86164 -12.73735 -12.44773 -12.21311 -12.12215 -11.86450 -11.42492 -11.17092 -10.92717 -10.90354 -10.81707 -10.52952 -10.28974 -9.76627 -8.99899 -8.51449 -6.22244 0.32329 0.97553 1.31389 1.39417 1.45851 1.53817 1.55306 2.03022 2.12655 2.24981 2.67986 2.83110 2.86809 3.42788 3.59213 3.65657 3.71103 3.92262 3.98751 4.11194 4.18605 4.30120 4.39804 4.42271 4.49167 4.57228 4.69639 4.82451 4.91670 4.97489 5.04159 5.05652 5.23092 5.36297 5.53595 5.57150 5.70874 5.91662 6.11520 6.22757 6.28156 6.76641 6.93756 7.01117 7.08319 8.60889 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.022021 B = 0.002472 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.232861 B =11325.846069 C =11933.651166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 H 0.087 0.913 4 C -0.127 4.127 5 C 0.147 3.853 6 H 0.102 0.898 7 N -0.686 5.686 8 C 0.508 3.492 9 O -0.536 6.536 10 C 0.514 3.486 11 N -0.802 5.802 12 O -0.553 6.553 13 C -0.140 4.140 14 C 0.104 3.896 15 N -0.600 5.600 16 C 0.538 3.462 17 O -0.560 6.560 18 C -0.108 4.108 19 S -0.176 6.176 20 C -0.527 4.527 21 H 0.062 0.938 22 C 0.045 3.955 23 N -0.917 5.917 24 Si 0.914 3.086 25 H -0.262 1.262 26 H -0.260 1.260 27 H -0.237 1.237 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.418 0.582 34 H 0.423 0.577 35 H 0.422 0.578 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.695 -8.100 -26.580 30.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.035 3.965 3 H 0.106 0.894 4 C -0.166 4.166 5 C 0.043 3.957 6 H 0.120 0.880 7 N -0.338 5.338 8 C 0.288 3.712 9 O -0.413 6.413 10 C 0.292 3.708 11 N -0.368 5.368 12 O -0.430 6.430 13 C -0.180 4.180 14 C -0.018 4.018 15 N -0.334 5.334 16 C 0.325 3.675 17 O -0.439 6.439 18 C -0.259 4.259 19 S 0.051 5.949 20 C -0.675 4.675 21 H 0.081 0.919 22 C -0.160 4.160 23 N -0.555 5.555 24 Si 0.736 3.264 25 H -0.187 1.187 26 H -0.184 1.184 27 H -0.161 1.161 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.125 0.875 32 H 0.092 0.908 33 H 0.256 0.744 34 H 0.255 0.745 35 H 0.257 0.743 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.390 -6.304 -26.424 29.857 hybrid contribution 0.414 -1.242 0.605 1.442 sum -11.977 -7.546 -25.819 29.445 Atomic orbital electron populations 1.22150 0.93101 1.03257 1.03093 1.21227 0.95384 0.96997 0.82862 0.89450 1.22167 1.02552 0.93376 0.98461 1.21140 1.00586 0.91041 0.82894 0.88026 1.45851 1.34496 1.25578 1.27904 1.20172 0.83345 0.82118 0.85533 1.90780 1.27846 1.65656 1.57047 1.20083 0.82968 0.82503 0.85219 1.43451 1.35427 1.26203 1.31757 1.90831 1.28416 1.66563 1.57236 1.22274 1.01423 1.00621 0.93638 1.21903 1.02803 0.78137 0.98995 1.48183 1.55130 1.09951 1.20179 1.19951 0.77175 0.86745 0.83631 1.90673 1.57983 1.16531 1.78698 1.23302 1.03967 1.02014 0.96586 1.84704 1.71979 1.16959 1.21260 1.22443 1.41882 0.96813 1.06341 0.91949 1.25563 0.94085 1.02401 0.93980 1.70012 1.38654 1.37320 1.09486 0.85869 0.79307 0.80058 0.81147 1.18703 1.18392 1.16060 0.93355 0.89258 0.90970 0.87500 0.90778 0.74432 0.74492 0.74348 0.91161 0.89537 0.88931 0.88964 0.87138 0.87151 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.03 71.98 0.65 -1.72 16 2 C 0.14 2.64 3.21 44.98 0.14 2.79 16 3 H 0.09 2.09 7.01 -2.39 -0.02 2.08 16 4 C -0.13 -1.70 5.03 30.70 0.15 -1.55 16 5 C 0.15 1.98 2.21 45.04 0.10 2.08 16 6 H 0.10 1.40 5.93 -2.39 -0.01 1.38 16 7 N -0.69 -8.92 5.07 -443.63 -2.25 -11.17 16 8 C 0.51 7.65 7.85 87.27 0.69 8.33 16 9 O -0.54 -9.88 16.14 -3.24 -0.05 -9.93 16 10 C 0.51 7.20 8.16 87.27 0.71 7.91 16 11 N -0.80 -5.50 8.87 -174.50 -1.55 -7.04 16 12 O -0.55 -10.89 17.31 -3.24 -0.06 -10.95 16 13 C -0.14 -2.17 5.65 30.67 0.17 -2.00 16 14 C 0.10 1.88 5.92 86.36 0.51 2.40 16 15 N -0.60 -14.23 2.68 -795.01 -2.13 -16.36 16 16 C 0.54 18.36 7.72 87.66 0.68 19.03 16 17 O -0.56 -23.53 15.27 -3.02 -0.05 -23.57 16 18 C -0.11 -4.06 4.50 71.24 0.32 -3.74 16 19 S -0.18 -8.85 18.55 -56.49 -1.05 -9.90 16 20 C -0.53 -30.58 10.04 67.95 0.68 -29.90 16 21 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 22 C 0.05 2.64 5.50 84.86 0.47 3.11 16 23 N -0.92 -55.75 13.97 21.65 0.30 -55.45 16 24 Si 0.91 44.98 27.74 68.60 1.90 46.88 16 25 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 26 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 27 H -0.24 -11.62 6.74 99.48 0.67 -10.95 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 0.93 5.72 -2.39 -0.01 0.91 16 31 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.42 4.83 8.08 -92.71 -0.75 4.09 16 34 H 0.42 1.77 8.30 -92.71 -0.77 1.00 16 35 H 0.42 1.32 8.93 -92.71 -0.83 0.49 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.09 1.38 7.50 -2.38 -0.02 1.36 16 39 H 0.09 1.77 5.95 -2.39 -0.01 1.76 16 40 H 0.11 3.84 7.94 -2.40 -0.02 3.83 16 41 H 0.11 3.84 7.70 -2.40 -0.02 3.82 16 42 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -78.25 359.61 -0.93 -79.18 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -1.29 Total: 11.57 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 5.28 Total: 6.74 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -5.63 Total: -90.02 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -0.15 Total: -44.46 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.90 Total: 46.88 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.05 Total: -9.90 kcal Total: -78.25 -0.93 -79.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075143583.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.491 kcal (2) G-P(sol) polarization free energy of solvation -78.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.28 seconds