Wall clock time and date at job start Tue Mar 31 2020 07:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.70525 * 2 1 4 4 C 1.53196 * 109.58756 * 120.35474 * 2 1 3 5 5 C 1.53035 * 109.30995 * 65.15203 * 4 2 1 6 6 H 1.08999 * 109.46561 * 301.34510 * 5 4 2 7 7 N 1.46502 * 109.45538 * 181.37364 * 5 4 2 8 8 C 1.34786 * 119.99948 * 155.00328 * 7 5 4 9 9 O 1.21352 * 119.99634 * 359.97438 * 8 7 5 10 10 C 1.49442 * 119.99933 * 179.97438 * 8 7 5 11 11 N 1.34786 * 119.99933 * 179.97438 * 10 8 7 12 12 O 1.21352 * 120.00432 * 359.97438 * 10 8 7 13 13 C 1.53042 * 109.54021 * 61.36728 * 5 4 2 14 14 C 1.53191 * 109.31021 * 298.63480 * 13 5 4 15 15 N 1.46924 * 108.77817 * 54.63576 * 14 13 5 16 16 C 1.34766 * 120.63242 * 126.37005 * 15 14 13 17 17 O 1.21286 * 120.00250 * 180.02562 * 16 15 14 18 18 C 1.50699 * 120.00319 * 0.02562 * 16 15 14 19 19 S 1.81004 * 109.47634 * 180.02562 * 18 16 15 20 20 C 1.76196 * 99.99924 * 180.02562 * 19 18 16 21 21 H 1.07994 * 120.00535 * 359.97438 * 20 19 18 22 22 C 1.38797 * 119.99488 * 180.02562 * 20 19 18 23 23 N 1.31635 * 120.00107 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00349 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.47335 * 89.99845 * 24 22 20 26 26 H 1.48500 * 109.47415 * 210.00220 * 24 22 20 27 27 H 1.48505 * 109.47387 * 330.00006 * 24 22 20 28 28 H 1.08998 * 109.47266 * 299.64657 * 1 2 3 29 29 H 1.09001 * 109.47112 * 59.64402 * 1 2 3 30 30 H 1.08994 * 109.47176 * 179.64351 * 1 2 3 31 31 H 1.09001 * 109.49651 * 185.10369 * 4 2 1 32 32 H 1.08996 * 109.49316 * 305.16607 * 4 2 1 33 33 H 0.96996 * 120.00422 * 334.99843 * 7 5 4 34 34 H 0.96996 * 119.99630 * 359.97438 * 11 10 8 35 35 H 0.96991 * 119.99762 * 180.02562 * 11 10 8 36 36 H 1.09006 * 109.49541 * 58.58370 * 13 5 4 37 37 H 1.08997 * 109.49624 * 178.64892 * 13 5 4 38 38 H 1.08999 * 109.58565 * 174.42221 * 14 13 5 39 39 H 1.08999 * 109.58540 * 294.84388 * 14 13 5 40 40 H 1.09003 * 109.47289 * 300.00768 * 18 16 15 41 41 H 1.09005 * 109.46555 * 59.99877 * 18 16 15 42 42 H 0.96996 * 120.00261 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2455 5 6 1.6414 -2.2040 1.1701 6 1 0.5565 -2.2815 1.0993 7 7 2.1026 -2.8977 2.3753 8 6 1.4754 -4.0161 2.7908 9 8 0.5285 -4.4480 2.1668 10 6 1.9462 -4.7240 4.0198 11 7 1.3187 -5.8421 4.4356 12 8 2.8935 -4.2923 4.6435 13 6 2.2800 -2.8464 -0.0635 14 6 1.7692 -2.1410 -1.3237 15 7 2.0226 -0.6995 -1.1945 16 6 2.6944 -0.0318 -2.1531 17 8 2.8976 1.1580 -2.0345 18 6 3.1932 -0.7634 -3.3726 19 16 4.0498 0.3982 -4.4649 20 6 4.5126 -0.6927 -5.7689 21 1 4.2488 -1.7386 -5.7173 22 6 5.2173 -0.2078 -6.8619 23 7 5.5628 -1.0226 -7.8364 24 14 5.6744 1.6012 -6.9509 25 1 7.0016 1.8082 -6.3177 26 1 5.7320 2.0279 -8.3721 27 1 4.6529 2.4058 -6.2336 28 1 -0.3634 0.5083 0.8931 29 1 -0.3633 0.5194 -0.8868 30 1 -0.3633 -1.0276 -0.0064 31 1 3.1297 -0.6503 1.2913 32 1 1.6080 -0.2780 2.1368 33 1 2.8593 -2.5523 2.8742 34 1 0.5614 -6.1869 3.9373 35 1 1.6241 -6.3013 5.2335 36 1 3.3640 -2.7474 -0.0052 37 1 2.0127 -3.9023 -0.1033 38 1 2.2944 -2.5274 -2.1971 39 1 0.6987 -2.3156 -1.4317 40 1 3.8827 -1.5505 -3.0673 41 1 2.3488 -1.2052 -3.9018 42 1 6.0549 -0.6837 -8.6005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075143584.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:37 Heat of formation + Delta-G solvation = -110.234290 kcal Electronic energy + Delta-G solvation = -25807.766825 eV Core-core repulsion = 21913.911360 eV Total energy + Delta-G solvation = -3893.855465 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.18934 -40.24974 -38.86127 -37.59900 -35.30504 -34.03831 -33.03393 -32.44744 -31.51038 -29.13667 -27.98560 -25.91619 -25.61912 -23.92359 -22.84806 -21.11962 -20.84457 -19.40995 -18.44659 -17.90874 -17.60210 -16.97138 -16.61875 -16.21881 -15.81760 -15.72445 -15.32158 -14.97166 -14.68297 -14.45604 -14.35067 -14.01818 -13.92023 -13.50287 -13.24584 -13.20576 -12.78340 -12.43232 -12.29577 -12.14256 -12.04162 -11.79029 -11.44165 -11.40473 -11.25898 -11.01764 -10.69097 -10.58592 -10.40806 -10.14123 -9.86664 -9.66369 -9.46176 -9.01378 -8.69421 -8.50322 -6.93249 -6.29786 -4.01701 0.95499 2.01429 2.65967 2.75828 2.89344 3.14113 3.32409 3.38875 3.49684 3.56803 4.08713 4.25223 4.32125 4.41138 4.56603 4.70049 4.74714 4.86370 4.99864 5.09229 5.13405 5.17947 5.26067 5.31421 5.42846 5.52291 5.62324 5.66967 5.72591 5.76171 5.86388 5.89926 5.97056 5.99261 6.08016 6.40585 6.53814 6.83783 7.32291 7.41321 7.54136 7.93206 8.39690 8.40734 9.16384 10.79407 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.022016 B = 0.002472 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.484859 B =11324.300076 C =11931.451681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.144 3.856 3 H 0.108 0.892 4 C -0.137 4.137 5 C 0.142 3.858 6 H 0.099 0.901 7 N -0.693 5.693 8 C 0.507 3.493 9 O -0.518 6.518 10 C 0.513 3.487 11 N -0.822 5.822 12 O -0.521 6.521 13 C -0.146 4.146 14 C 0.110 3.890 15 N -0.615 5.615 16 C 0.536 3.464 17 O -0.518 6.518 18 C -0.122 4.122 19 S -0.143 6.143 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.413 0.587 34 H 0.415 0.585 35 H 0.411 0.589 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.708 -7.723 24.505 28.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.040 3.960 3 H 0.126 0.874 4 C -0.176 4.176 5 C 0.039 3.961 6 H 0.117 0.883 7 N -0.346 5.346 8 C 0.287 3.713 9 O -0.394 6.394 10 C 0.292 3.708 11 N -0.389 5.389 12 O -0.397 6.397 13 C -0.186 4.186 14 C -0.014 4.014 15 N -0.351 5.351 16 C 0.324 3.676 17 O -0.392 6.392 18 C -0.273 4.273 19 S 0.084 5.916 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.249 0.751 34 H 0.245 0.755 35 H 0.244 0.756 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.091 0.909 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.370 -5.862 24.308 27.469 hybrid contribution 0.242 -1.197 -0.065 1.223 sum -11.128 -7.059 24.243 27.593 Atomic orbital electron populations 1.22188 0.94861 1.02438 1.02776 1.21024 0.94091 0.97877 0.83056 0.87437 1.22241 1.02725 0.93604 0.98999 1.21213 1.00585 0.91219 0.83126 0.88297 1.45923 1.34615 1.25828 1.28197 1.20053 0.83663 0.82127 0.85499 1.90787 1.27048 1.65095 1.56420 1.20173 0.83138 0.81945 0.85569 1.43536 1.36102 1.27463 1.31759 1.90837 1.26950 1.65506 1.56370 1.22346 1.01736 1.00537 0.93945 1.21687 1.01493 0.79868 0.98332 1.48195 1.57161 1.08954 1.20838 1.20297 0.76628 0.87362 0.83322 1.90690 1.55811 1.14964 1.77771 1.23323 1.03888 1.03251 0.96809 1.84795 1.71447 1.14980 1.20412 1.22301 1.42029 0.97290 1.05206 0.89393 1.24716 0.94046 0.98356 0.94213 1.69938 1.37602 1.35384 1.08747 0.86734 0.81198 0.85321 0.78587 1.19223 1.19952 1.15921 0.91444 0.91727 0.92120 0.90355 0.89842 0.75053 0.75483 0.75632 0.90632 0.89969 0.88563 0.90889 0.88542 0.88457 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.02 37.16 0.34 -1.10 16 2 C 0.14 1.49 3.21 -67.60 -0.22 1.28 16 3 H 0.11 1.33 7.00 -51.93 -0.36 0.96 16 4 C -0.14 -1.08 5.02 -26.61 -0.13 -1.22 16 5 C 0.14 1.14 2.21 -67.89 -0.15 0.99 16 6 H 0.10 0.85 5.94 -51.93 -0.31 0.54 16 7 N -0.69 -5.29 5.07 -54.20 -0.27 -5.57 16 8 C 0.51 4.35 7.85 -11.58 -0.09 4.26 16 9 O -0.52 -5.37 16.14 5.49 0.09 -5.28 16 10 C 0.51 4.06 8.16 -11.58 -0.09 3.96 16 11 N -0.82 -3.68 8.87 30.90 0.27 -3.41 16 12 O -0.52 -5.50 17.31 5.49 0.10 -5.41 16 13 C -0.15 -1.29 5.65 -26.61 -0.15 -1.44 16 14 C 0.11 1.11 5.92 -3.71 -0.02 1.08 16 15 N -0.62 -7.72 2.68 -165.22 -0.44 -8.16 16 16 C 0.54 9.30 7.72 -10.99 -0.08 9.21 16 17 O -0.52 -10.83 15.28 5.55 0.08 -10.74 16 18 C -0.12 -2.32 4.50 36.01 0.16 -2.16 16 19 S -0.14 -3.58 18.55 -107.50 -1.99 -5.57 16 20 C -0.52 -14.86 10.04 30.94 0.31 -14.55 16 21 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 22 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 23 N -0.88 -26.43 13.97 55.49 0.78 -25.66 16 24 Si 0.86 21.69 27.74 -169.99 -4.71 16.98 16 25 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.49 5.72 -51.93 -0.30 0.19 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.41 2.81 8.07 -40.82 -0.33 2.48 16 34 H 0.41 1.34 8.30 -40.82 -0.34 1.00 16 35 H 0.41 1.08 8.93 -40.82 -0.36 0.72 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 1.01 5.93 -51.93 -0.31 0.70 16 39 H 0.07 0.65 7.48 -51.93 -0.39 0.26 16 40 H 0.10 1.71 7.69 -51.91 -0.40 1.31 16 41 H 0.10 1.73 7.94 -51.91 -0.41 1.32 16 42 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 359.57 15.07 5.42 5.42 Total: -1.00 -35.90 359.57 -6.54 -42.44 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.62 Total: 1.96 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -0.23 Total: 2.99 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.33 Total: -42.80 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: 0.27 Total: -21.43 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.98 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.90 -6.54 -42.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075143584.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.790 kcal (2) G-P(sol) polarization free energy of solvation -35.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds