Wall clock time and date at job start Tue Mar 31 2020 07:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.70525 * 2 1 4 4 C 1.53196 * 109.58756 * 120.35474 * 2 1 3 5 5 C 1.53035 * 109.30995 * 65.15203 * 4 2 1 6 6 H 1.08999 * 109.46561 * 301.34510 * 5 4 2 7 7 N 1.46502 * 109.45538 * 181.37364 * 5 4 2 8 8 C 1.34786 * 119.99948 * 155.00328 * 7 5 4 9 9 O 1.21352 * 119.99634 * 359.97438 * 8 7 5 10 10 C 1.49442 * 119.99933 * 179.97438 * 8 7 5 11 11 N 1.34786 * 119.99933 * 179.97438 * 10 8 7 12 12 O 1.21352 * 120.00432 * 359.97438 * 10 8 7 13 13 C 1.53042 * 109.54021 * 61.36728 * 5 4 2 14 14 C 1.53191 * 109.31021 * 298.63480 * 13 5 4 15 15 N 1.46924 * 108.77817 * 54.63576 * 14 13 5 16 16 C 1.34766 * 120.63242 * 126.37005 * 15 14 13 17 17 O 1.21286 * 120.00250 * 180.02562 * 16 15 14 18 18 C 1.50699 * 120.00319 * 0.02562 * 16 15 14 19 19 S 1.81004 * 109.47634 * 180.02562 * 18 16 15 20 20 C 1.76196 * 99.99924 * 180.02562 * 19 18 16 21 21 H 1.07994 * 120.00535 * 359.97438 * 20 19 18 22 22 C 1.38797 * 119.99488 * 180.02562 * 20 19 18 23 23 N 1.31635 * 120.00107 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00349 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.47335 * 89.99845 * 24 22 20 26 26 H 1.48500 * 109.47415 * 210.00220 * 24 22 20 27 27 H 1.48505 * 109.47387 * 330.00006 * 24 22 20 28 28 H 1.08998 * 109.47266 * 299.64657 * 1 2 3 29 29 H 1.09001 * 109.47112 * 59.64402 * 1 2 3 30 30 H 1.08994 * 109.47176 * 179.64351 * 1 2 3 31 31 H 1.09001 * 109.49651 * 185.10369 * 4 2 1 32 32 H 1.08996 * 109.49316 * 305.16607 * 4 2 1 33 33 H 0.96996 * 120.00422 * 334.99843 * 7 5 4 34 34 H 0.96996 * 119.99630 * 359.97438 * 11 10 8 35 35 H 0.96991 * 119.99762 * 180.02562 * 11 10 8 36 36 H 1.09006 * 109.49541 * 58.58370 * 13 5 4 37 37 H 1.08997 * 109.49624 * 178.64892 * 13 5 4 38 38 H 1.08999 * 109.58565 * 174.42221 * 14 13 5 39 39 H 1.08999 * 109.58540 * 294.84388 * 14 13 5 40 40 H 1.09003 * 109.47289 * 300.00768 * 18 16 15 41 41 H 1.09005 * 109.46555 * 59.99877 * 18 16 15 42 42 H 0.96996 * 120.00261 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2455 5 6 1.6414 -2.2040 1.1701 6 1 0.5565 -2.2815 1.0993 7 7 2.1026 -2.8977 2.3753 8 6 1.4754 -4.0161 2.7908 9 8 0.5285 -4.4480 2.1668 10 6 1.9462 -4.7240 4.0198 11 7 1.3187 -5.8421 4.4356 12 8 2.8935 -4.2923 4.6435 13 6 2.2800 -2.8464 -0.0635 14 6 1.7692 -2.1410 -1.3237 15 7 2.0226 -0.6995 -1.1945 16 6 2.6944 -0.0318 -2.1531 17 8 2.8976 1.1580 -2.0345 18 6 3.1932 -0.7634 -3.3726 19 16 4.0498 0.3982 -4.4649 20 6 4.5126 -0.6927 -5.7689 21 1 4.2488 -1.7386 -5.7173 22 6 5.2173 -0.2078 -6.8619 23 7 5.5628 -1.0226 -7.8364 24 14 5.6744 1.6012 -6.9509 25 1 7.0016 1.8082 -6.3177 26 1 5.7320 2.0279 -8.3721 27 1 4.6529 2.4058 -6.2336 28 1 -0.3634 0.5083 0.8931 29 1 -0.3633 0.5194 -0.8868 30 1 -0.3633 -1.0276 -0.0064 31 1 3.1297 -0.6503 1.2913 32 1 1.6080 -0.2780 2.1368 33 1 2.8593 -2.5523 2.8742 34 1 0.5614 -6.1869 3.9373 35 1 1.6241 -6.3013 5.2335 36 1 3.3640 -2.7474 -0.0052 37 1 2.0127 -3.9023 -0.1033 38 1 2.2944 -2.5274 -2.1971 39 1 0.6987 -2.3156 -1.4317 40 1 3.8827 -1.5505 -3.0673 41 1 2.3488 -1.2052 -3.9018 42 1 6.0549 -0.6837 -8.6005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075143584.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:35 Heat of formation + Delta-G solvation = -139.667519 kcal Electronic energy + Delta-G solvation = -25809.043146 eV Core-core repulsion = 21913.911360 eV Total energy + Delta-G solvation = -3895.131785 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.92292 -41.22085 -39.64397 -38.61933 -36.11231 -34.67463 -34.61979 -33.94994 -32.36153 -30.50840 -28.79273 -27.85161 -26.57833 -24.73230 -23.66434 -22.14479 -21.48982 -20.20444 -19.77294 -19.13793 -18.57056 -18.03298 -17.25808 -17.16741 -16.92912 -16.82053 -16.56003 -16.49985 -15.82783 -15.34742 -15.20199 -15.07933 -14.95676 -14.79651 -14.43896 -14.33821 -14.08018 -13.48541 -13.33506 -13.23481 -13.03162 -13.01434 -12.86145 -12.73783 -12.44763 -12.21423 -12.12093 -11.86466 -11.42696 -11.17144 -10.92743 -10.90352 -10.81710 -10.52967 -10.28953 -9.76650 -8.99909 -8.51471 -6.22273 0.32265 0.97543 1.31291 1.39383 1.45917 1.53683 1.55324 2.03010 2.12632 2.24941 2.67954 2.83106 2.86769 3.42873 3.59217 3.65567 3.71273 3.92166 3.98710 4.11256 4.18515 4.30143 4.39825 4.42335 4.49200 4.57195 4.69522 4.82478 4.91656 4.97463 5.04176 5.05630 5.23088 5.36307 5.53607 5.57135 5.70880 5.91628 6.11538 6.22714 6.28139 6.76636 6.93740 7.01112 7.08292 8.60869 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.022016 B = 0.002472 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.484859 B =11324.300076 C =11931.451681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 H 0.087 0.913 4 C -0.127 4.127 5 C 0.147 3.853 6 H 0.102 0.898 7 N -0.686 5.686 8 C 0.508 3.492 9 O -0.536 6.536 10 C 0.514 3.486 11 N -0.802 5.802 12 O -0.553 6.553 13 C -0.140 4.140 14 C 0.104 3.896 15 N -0.600 5.600 16 C 0.538 3.462 17 O -0.561 6.561 18 C -0.108 4.108 19 S -0.176 6.176 20 C -0.527 4.527 21 H 0.062 0.938 22 C 0.045 3.955 23 N -0.917 5.917 24 Si 0.914 3.086 25 H -0.263 1.263 26 H -0.259 1.259 27 H -0.237 1.237 28 H 0.089 0.911 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.418 0.582 34 H 0.423 0.577 35 H 0.422 0.578 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.858 -8.064 26.493 30.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.035 3.965 3 H 0.105 0.895 4 C -0.166 4.166 5 C 0.044 3.956 6 H 0.120 0.880 7 N -0.338 5.338 8 C 0.288 3.712 9 O -0.413 6.413 10 C 0.292 3.708 11 N -0.368 5.368 12 O -0.430 6.430 13 C -0.180 4.180 14 C -0.018 4.018 15 N -0.334 5.334 16 C 0.325 3.675 17 O -0.439 6.439 18 C -0.259 4.259 19 S 0.051 5.949 20 C -0.675 4.675 21 H 0.081 0.919 22 C -0.160 4.160 23 N -0.555 5.555 24 Si 0.736 3.264 25 H -0.187 1.187 26 H -0.184 1.184 27 H -0.161 1.161 28 H 0.108 0.892 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.125 0.875 33 H 0.256 0.744 34 H 0.255 0.745 35 H 0.256 0.744 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.558 -6.268 26.334 29.841 hybrid contribution 0.489 -1.257 -0.563 1.462 sum -12.069 -7.525 25.771 29.435 Atomic orbital electron populations 1.22147 0.93100 1.03238 1.03117 1.21228 0.95387 0.97000 0.82864 0.89453 1.22155 1.02556 0.93385 0.98464 1.21129 1.00588 0.91040 0.82889 0.88021 1.45857 1.34555 1.25535 1.27891 1.20173 0.83339 0.82123 0.85535 1.90782 1.27866 1.65639 1.57038 1.20086 0.82966 0.82506 0.85217 1.43451 1.35491 1.26151 1.31746 1.90833 1.28401 1.66569 1.57245 1.22277 1.01416 1.00622 0.93643 1.21909 1.02800 0.78131 0.98993 1.48183 1.55131 1.09957 1.20173 1.19951 0.77181 0.86743 0.83629 1.90675 1.57981 1.16530 1.78707 1.23303 1.03967 1.02004 0.96596 1.84705 1.72614 1.16809 1.20770 1.22442 1.41737 0.96797 1.06498 0.91948 1.25564 0.94088 1.02395 0.93988 1.70015 1.38605 1.37317 1.09540 0.85869 0.80850 0.80413 0.79248 1.18723 1.18375 1.16055 0.89243 0.93358 0.90977 0.90780 0.87492 0.74433 0.74491 0.74351 0.91170 0.89530 0.88976 0.88905 0.87189 0.87100 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.02 71.98 0.65 -1.72 16 2 C 0.14 2.64 3.21 44.97 0.14 2.78 16 3 H 0.09 2.09 7.00 -2.39 -0.02 2.08 16 4 C -0.13 -1.70 5.02 30.67 0.15 -1.55 16 5 C 0.15 1.98 2.21 45.02 0.10 2.08 16 6 H 0.10 1.40 5.94 -2.39 -0.01 1.38 16 7 N -0.69 -8.92 5.07 -443.73 -2.25 -11.17 16 8 C 0.51 7.65 7.85 87.26 0.69 8.33 16 9 O -0.54 -9.88 16.14 -3.25 -0.05 -9.93 16 10 C 0.51 7.20 8.16 87.26 0.71 7.91 16 11 N -0.80 -5.50 8.87 -174.49 -1.55 -7.05 16 12 O -0.55 -10.89 17.31 -3.25 -0.06 -10.95 16 13 C -0.14 -2.17 5.65 30.67 0.17 -2.00 16 14 C 0.10 1.88 5.92 86.36 0.51 2.40 16 15 N -0.60 -14.22 2.68 -795.04 -2.13 -16.35 16 16 C 0.54 18.36 7.72 87.66 0.68 19.03 16 17 O -0.56 -23.53 15.28 -3.05 -0.05 -23.58 16 18 C -0.11 -4.06 4.50 71.24 0.32 -3.74 16 19 S -0.18 -8.85 18.55 -56.49 -1.05 -9.90 16 20 C -0.53 -30.58 10.04 67.95 0.68 -29.89 16 21 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 22 C 0.05 2.64 5.50 84.86 0.47 3.11 16 23 N -0.92 -55.76 13.97 21.65 0.30 -55.46 16 24 Si 0.91 44.99 27.74 68.60 1.90 46.89 16 25 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 26 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 27 H -0.24 -11.62 6.74 99.48 0.67 -10.95 16 28 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.93 5.72 -2.39 -0.01 0.91 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.42 4.84 8.07 -92.71 -0.75 4.09 16 34 H 0.42 1.77 8.30 -92.71 -0.77 1.00 16 35 H 0.42 1.32 8.93 -92.71 -0.83 0.50 16 36 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.09 1.77 5.93 -2.39 -0.01 1.75 16 39 H 0.09 1.38 7.48 -2.39 -0.02 1.36 16 40 H 0.11 3.83 7.69 -2.39 -0.02 3.81 16 41 H 0.11 3.86 7.94 -2.39 -0.02 3.84 16 42 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -78.26 359.57 -0.94 -79.19 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -1.29 Total: 11.57 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 5.28 Total: 6.74 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -5.63 Total: -90.03 kcal Atomic # 8 Polarization: -44.31 SS G_CDS: -0.16 Total: -44.46 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.90 Total: 46.89 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.05 Total: -9.90 kcal Total: -78.26 -0.94 -79.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075143584.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.476 kcal (2) G-P(sol) polarization free energy of solvation -78.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds