Wall clock time and date at job start Tue Mar 31 2020 07:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.58466 * 2 1 4 4 C 1.53192 * 109.58770 * 120.28508 * 2 1 3 5 5 C 1.53043 * 109.30847 * 174.56546 * 4 2 1 6 6 H 1.09002 * 109.46299 * 58.65778 * 5 4 2 7 7 N 1.46503 * 109.45521 * 178.61031 * 5 4 2 8 8 C 1.34781 * 119.99931 * 204.99605 * 7 5 4 9 9 O 1.21342 * 119.99845 * 0.02562 * 8 7 5 10 10 C 1.49449 * 119.99748 * 180.02562 * 8 7 5 11 11 N 1.34781 * 119.99748 * 179.97438 * 10 8 7 12 12 O 1.21350 * 120.00161 * 0.02562 * 10 8 7 13 13 C 1.53032 * 109.54190 * 298.63196 * 5 4 2 14 14 C 1.53192 * 109.30986 * 61.36583 * 13 5 4 15 15 N 1.46925 * 108.78105 * 305.36567 * 14 13 5 16 16 C 1.34772 * 120.63633 * 233.63506 * 15 14 13 17 17 O 1.21279 * 120.00317 * 185.67677 * 16 15 14 18 18 C 1.50706 * 119.99753 * 5.66916 * 16 15 14 19 19 S 1.81001 * 109.46858 * 180.02562 * 18 16 15 20 20 C 1.76206 * 99.99649 * 180.02562 * 19 18 16 21 21 H 1.07995 * 120.00085 * 0.02562 * 20 19 18 22 22 C 1.38804 * 119.99620 * 179.97438 * 20 19 18 23 23 N 1.31629 * 120.00078 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99677 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47136 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47009 * 120.00270 * 24 22 20 27 27 H 1.48501 * 109.47028 * 240.00039 * 24 22 20 28 28 H 1.09002 * 109.46938 * 294.19776 * 1 2 3 29 29 H 1.09002 * 109.47662 * 54.20205 * 1 2 3 30 30 H 1.08999 * 109.47295 * 174.20371 * 1 2 3 31 31 H 1.09003 * 109.49467 * 294.51378 * 4 2 1 32 32 H 1.08996 * 109.49607 * 54.61442 * 4 2 1 33 33 H 0.96998 * 120.00073 * 25.00417 * 7 5 4 34 34 H 0.96998 * 119.99996 * 0.02562 * 11 10 8 35 35 H 0.96997 * 119.99713 * 179.97438 * 11 10 8 36 36 H 1.09004 * 109.49460 * 301.42006 * 13 5 4 37 37 H 1.08998 * 109.52857 * 181.33522 * 13 5 4 38 38 H 1.09011 * 109.58713 * 185.57869 * 14 13 5 39 39 H 1.08998 * 109.70379 * 65.22889 * 14 13 5 40 40 H 1.09001 * 109.47120 * 300.00406 * 18 16 15 41 41 H 1.08995 * 109.46765 * 60.00373 * 18 16 15 42 42 H 0.96995 * 119.99974 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 1.2463 5 6 3.5679 -0.8433 1.1728 6 1 4.0046 0.1529 1.1021 7 7 4.0655 -1.5095 2.3789 8 6 5.3289 -1.2932 2.7957 9 8 6.0539 -0.5463 2.1721 10 6 5.8367 -1.9733 4.0258 11 7 7.1002 -1.7573 4.4422 12 8 5.1117 -2.7206 4.6491 13 6 3.9604 -1.6607 -0.0600 14 6 3.4685 -0.9435 -1.3211 15 7 2.0253 -0.6990 -1.1937 16 6 1.1720 -1.1085 -2.1531 17 8 -0.0020 -0.8116 -2.0877 18 6 1.6769 -1.9355 -3.3075 19 16 0.3015 -2.3241 -4.4181 20 6 1.1516 -3.2687 -5.6388 21 1 2.2132 -3.4429 -5.5441 22 6 0.4566 -3.7896 -6.7215 23 7 -0.8374 -3.5776 -6.8365 24 14 1.3579 -4.7903 -8.0159 25 1 2.7961 -4.8823 -7.6577 26 1 0.7760 -6.1551 -8.0803 27 1 1.2179 -4.1296 -9.3385 28 1 -0.3633 0.4212 0.9374 29 1 -0.3634 0.6011 -0.8335 30 1 -0.3634 -1.0224 -0.1038 31 1 1.7638 -0.1654 2.1371 32 1 1.6050 -1.7246 1.2920 33 1 3.4858 -2.1064 2.8775 34 1 7.6798 -1.1603 3.9438 35 1 7.4297 -2.1984 5.2408 36 1 3.5037 -2.6487 -0.0019 37 1 5.0449 -1.7629 -0.0992 38 1 3.6575 -1.5683 -2.1941 39 1 3.9917 0.0063 -1.4314 40 1 2.4358 -1.3739 -3.8522 41 1 2.1113 -2.8607 -2.9290 42 1 -1.3231 -3.9413 -7.5933 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075143585.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:45 Heat of formation + Delta-G solvation = -97.183323 kcal Electronic energy + Delta-G solvation = -25784.875540 eV Core-core repulsion = 21891.586007 eV Total energy + Delta-G solvation = -3893.289532 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 13.24 seconds Orbital eigenvalues (eV) -41.14629 -40.26048 -38.86673 -37.40139 -35.17471 -34.01431 -33.23038 -32.43965 -31.49757 -29.04099 -27.41170 -25.86693 -25.48577 -23.94982 -22.40009 -21.28370 -20.76942 -19.36817 -18.78582 -17.68590 -17.60656 -16.58715 -16.50180 -16.24446 -16.00445 -15.79805 -15.34382 -14.81553 -14.61444 -14.46289 -14.30164 -14.02786 -13.75028 -13.45132 -13.11998 -12.64992 -12.50537 -12.38233 -12.21861 -12.03297 -11.83719 -11.73635 -11.33497 -11.14593 -11.07860 -11.01516 -10.93015 -10.76110 -10.39903 -10.14340 -9.80407 -9.60634 -9.08393 -8.76659 -8.52112 -8.23358 -6.50993 -6.22955 -3.93254 0.96910 2.03017 2.77087 2.87679 3.02416 3.20742 3.24817 3.30158 3.40687 3.56890 4.10941 4.19106 4.30595 4.45536 4.68197 4.78864 4.90014 5.04750 5.12455 5.13748 5.21536 5.35489 5.47801 5.52893 5.55152 5.70791 5.72465 5.80585 5.83884 5.86224 5.94043 6.00826 6.11009 6.24774 6.41761 6.46880 6.79669 6.85673 7.33756 7.54331 7.55541 7.59063 8.34309 8.56644 9.22722 10.84496 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.017855 B = 0.002525 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.788532 B =11086.290786 C =12140.202014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.153 3.847 3 H 0.071 0.929 4 C -0.140 4.140 5 C 0.144 3.856 6 H 0.096 0.904 7 N -0.693 5.693 8 C 0.507 3.493 9 O -0.518 6.518 10 C 0.513 3.487 11 N -0.823 5.823 12 O -0.521 6.521 13 C -0.146 4.146 14 C 0.113 3.887 15 N -0.620 5.620 16 C 0.536 3.464 17 O -0.507 6.507 18 C -0.153 4.153 19 S -0.061 6.061 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.413 0.587 34 H 0.415 0.585 35 H 0.411 0.589 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.696 6.305 21.736 26.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.049 3.951 3 H 0.089 0.911 4 C -0.179 4.179 5 C 0.040 3.960 6 H 0.114 0.886 7 N -0.345 5.345 8 C 0.286 3.714 9 O -0.394 6.394 10 C 0.292 3.708 11 N -0.389 5.389 12 O -0.396 6.396 13 C -0.186 4.186 14 C -0.011 4.011 15 N -0.357 5.357 16 C 0.325 3.675 17 O -0.381 6.381 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.250 0.750 34 H 0.245 0.755 35 H 0.244 0.756 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.687 6.814 21.540 25.911 hybrid contribution 2.329 -1.291 -0.507 2.711 sum 15.016 5.523 21.033 26.427 Atomic orbital electron populations 1.22207 0.91891 1.04434 1.01074 1.21096 0.96364 0.94739 0.82930 0.91096 1.22360 0.93333 1.02957 0.99251 1.21163 0.94486 0.97231 0.83089 0.88634 1.45928 1.12848 1.47615 1.28133 1.20051 0.83221 0.82578 0.85502 1.90783 1.55992 1.36129 1.56497 1.20178 0.83122 0.81943 0.85584 1.43536 1.13518 1.50132 1.31693 1.90837 1.56318 1.36069 1.56419 1.22345 1.02146 1.00047 0.94024 1.21660 0.80508 1.00755 0.98224 1.48210 1.07037 1.59599 1.20844 1.20282 0.85821 0.79038 0.82394 1.90738 1.16797 1.54971 1.75587 1.23615 1.06536 1.01335 0.98903 1.85369 1.07857 1.68266 1.21937 1.22895 0.97066 1.38286 1.09975 0.90933 1.24992 0.94975 0.96084 0.97555 1.70023 1.06984 1.43183 1.30079 0.86125 0.79496 0.79420 0.80505 1.19618 1.20581 1.20560 0.94010 0.89756 0.91220 0.89937 0.90333 0.75031 0.75493 0.75643 0.90662 0.90077 0.88641 0.91041 0.89381 0.89387 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 7.61 37.16 0.28 -1.53 16 2 C 0.15 1.70 3.48 -67.60 -0.24 1.46 16 3 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.14 -1.20 4.84 -26.61 -0.13 -1.33 16 5 C 0.14 1.22 2.42 -67.89 -0.16 1.05 16 6 H 0.10 0.86 7.58 -51.93 -0.39 0.47 16 7 N -0.69 -5.53 5.07 -54.20 -0.27 -5.81 16 8 C 0.51 4.48 7.85 -11.58 -0.09 4.39 16 9 O -0.52 -5.52 16.14 5.50 0.09 -5.43 16 10 C 0.51 4.16 8.16 -11.58 -0.09 4.06 16 11 N -0.82 -3.81 8.87 30.91 0.27 -3.53 16 12 O -0.52 -5.60 17.31 5.50 0.10 -5.51 16 13 C -0.15 -1.34 5.65 -26.62 -0.15 -1.49 16 14 C 0.11 1.18 6.35 -3.71 -0.02 1.16 16 15 N -0.62 -8.17 2.97 -165.21 -0.49 -8.66 16 16 C 0.54 9.59 7.52 -10.98 -0.08 9.51 16 17 O -0.51 -10.59 11.44 5.56 0.06 -10.52 16 18 C -0.15 -3.02 4.51 36.01 0.16 -2.85 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 20 C -0.53 -15.03 9.50 30.94 0.29 -14.73 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 24 Si 0.92 21.28 29.55 -169.99 -5.02 16.25 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.08 1.31 6.58 -51.93 -0.34 0.97 16 30 H 0.07 1.07 6.93 -51.93 -0.36 0.71 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.41 2.96 8.07 -40.82 -0.33 2.64 16 34 H 0.41 1.40 8.30 -40.82 -0.34 1.06 16 35 H 0.41 1.13 8.93 -40.82 -0.36 0.77 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.10 1.04 5.93 -51.92 -0.31 0.73 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 1.61 7.71 -51.91 -0.40 1.21 16 41 H 0.09 1.62 7.92 -51.92 -0.41 1.21 16 42 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 360.93 15.07 5.44 5.44 Total: -1.00 -35.43 360.93 -7.38 -42.82 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -5.75 Total: 2.34 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -0.33 Total: 1.68 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.24 Total: -43.23 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: 0.25 Total: -21.46 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.43 -7.38 -42.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075143585.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.366 kcal (2) G-P(sol) polarization free energy of solvation -35.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.24 seconds