Wall clock time and date at job start Tue Mar 31 2020 07:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.58466 * 2 1 4 4 C 1.53192 * 109.58770 * 120.28508 * 2 1 3 5 5 C 1.53043 * 109.30847 * 174.56546 * 4 2 1 6 6 H 1.09002 * 109.46299 * 58.65778 * 5 4 2 7 7 N 1.46503 * 109.45521 * 178.61031 * 5 4 2 8 8 C 1.34781 * 119.99931 * 204.99605 * 7 5 4 9 9 O 1.21342 * 119.99845 * 0.02562 * 8 7 5 10 10 C 1.49449 * 119.99748 * 180.02562 * 8 7 5 11 11 N 1.34781 * 119.99748 * 179.97438 * 10 8 7 12 12 O 1.21350 * 120.00161 * 0.02562 * 10 8 7 13 13 C 1.53032 * 109.54190 * 298.63196 * 5 4 2 14 14 C 1.53192 * 109.30986 * 61.36583 * 13 5 4 15 15 N 1.46925 * 108.78105 * 305.36567 * 14 13 5 16 16 C 1.34772 * 120.63633 * 233.63506 * 15 14 13 17 17 O 1.21279 * 120.00317 * 185.67677 * 16 15 14 18 18 C 1.50706 * 119.99753 * 5.66916 * 16 15 14 19 19 S 1.81001 * 109.46858 * 180.02562 * 18 16 15 20 20 C 1.76206 * 99.99649 * 180.02562 * 19 18 16 21 21 H 1.07995 * 120.00085 * 0.02562 * 20 19 18 22 22 C 1.38804 * 119.99620 * 179.97438 * 20 19 18 23 23 N 1.31629 * 120.00078 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99677 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47136 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47009 * 120.00270 * 24 22 20 27 27 H 1.48501 * 109.47028 * 240.00039 * 24 22 20 28 28 H 1.09002 * 109.46938 * 294.19776 * 1 2 3 29 29 H 1.09002 * 109.47662 * 54.20205 * 1 2 3 30 30 H 1.08999 * 109.47295 * 174.20371 * 1 2 3 31 31 H 1.09003 * 109.49467 * 294.51378 * 4 2 1 32 32 H 1.08996 * 109.49607 * 54.61442 * 4 2 1 33 33 H 0.96998 * 120.00073 * 25.00417 * 7 5 4 34 34 H 0.96998 * 119.99996 * 0.02562 * 11 10 8 35 35 H 0.96997 * 119.99713 * 179.97438 * 11 10 8 36 36 H 1.09004 * 109.49460 * 301.42006 * 13 5 4 37 37 H 1.08998 * 109.52857 * 181.33522 * 13 5 4 38 38 H 1.09011 * 109.58713 * 185.57869 * 14 13 5 39 39 H 1.08998 * 109.70379 * 65.22889 * 14 13 5 40 40 H 1.09001 * 109.47120 * 300.00406 * 18 16 15 41 41 H 1.08995 * 109.46765 * 60.00373 * 18 16 15 42 42 H 0.96995 * 119.99974 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 1.2463 5 6 3.5679 -0.8433 1.1728 6 1 4.0046 0.1529 1.1021 7 7 4.0655 -1.5095 2.3789 8 6 5.3289 -1.2932 2.7957 9 8 6.0539 -0.5463 2.1721 10 6 5.8367 -1.9733 4.0258 11 7 7.1002 -1.7573 4.4422 12 8 5.1117 -2.7206 4.6491 13 6 3.9604 -1.6607 -0.0600 14 6 3.4685 -0.9435 -1.3211 15 7 2.0253 -0.6990 -1.1937 16 6 1.1720 -1.1085 -2.1531 17 8 -0.0020 -0.8116 -2.0877 18 6 1.6769 -1.9355 -3.3075 19 16 0.3015 -2.3241 -4.4181 20 6 1.1516 -3.2687 -5.6388 21 1 2.2132 -3.4429 -5.5441 22 6 0.4566 -3.7896 -6.7215 23 7 -0.8374 -3.5776 -6.8365 24 14 1.3579 -4.7903 -8.0159 25 1 2.7961 -4.8823 -7.6577 26 1 0.7760 -6.1551 -8.0803 27 1 1.2179 -4.1296 -9.3385 28 1 -0.3633 0.4212 0.9374 29 1 -0.3634 0.6011 -0.8335 30 1 -0.3634 -1.0224 -0.1038 31 1 1.7638 -0.1654 2.1371 32 1 1.6050 -1.7246 1.2920 33 1 3.4858 -2.1064 2.8775 34 1 7.6798 -1.1603 3.9438 35 1 7.4297 -2.1984 5.2408 36 1 3.5037 -2.6487 -0.0019 37 1 5.0449 -1.7629 -0.0992 38 1 3.6575 -1.5683 -2.1941 39 1 3.9917 0.0063 -1.4314 40 1 2.4358 -1.3739 -3.8522 41 1 2.1113 -2.8607 -2.9290 42 1 -1.3231 -3.9413 -7.5933 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075143585.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:40 Heat of formation + Delta-G solvation = -126.043678 kcal Electronic energy + Delta-G solvation = -25786.127019 eV Core-core repulsion = 21891.586007 eV Total energy + Delta-G solvation = -3894.541011 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -41.91004 -41.29351 -39.62823 -38.41584 -36.03252 -34.62158 -34.58175 -34.22877 -32.39667 -30.41124 -28.43994 -27.62865 -26.60628 -24.78696 -23.37067 -22.13540 -21.44683 -20.46860 -19.70509 -19.34030 -18.27694 -17.76982 -17.25425 -17.21270 -16.88054 -16.82760 -16.64448 -16.48137 -15.87664 -15.30547 -15.18081 -15.05072 -14.89513 -14.53371 -14.45182 -14.29032 -13.57561 -13.44056 -13.18755 -13.10977 -13.05247 -12.91056 -12.80508 -12.72076 -12.57675 -12.09985 -12.07129 -11.74872 -11.68806 -11.15612 -10.90537 -10.85057 -10.32648 -10.22515 -10.12510 -9.63300 -8.65213 -8.34655 -6.11814 0.32279 1.26795 1.40462 1.41023 1.46425 1.57254 1.64246 2.09119 2.12723 2.27817 2.82933 2.99588 3.25812 3.50936 3.59549 3.70447 3.75344 3.95482 4.00056 4.21970 4.27427 4.34068 4.35590 4.47938 4.50870 4.65230 4.78837 4.84179 4.88917 4.95874 5.05994 5.21561 5.27284 5.40903 5.42349 5.53679 5.73068 5.91643 6.20122 6.27145 6.33022 6.76542 7.01127 7.07041 7.22463 8.74675 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.017855 B = 0.002525 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.788532 B =11086.290786 C =12140.202014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.149 3.851 3 H 0.093 0.907 4 C -0.129 4.129 5 C 0.150 3.850 6 H 0.099 0.901 7 N -0.686 5.686 8 C 0.508 3.492 9 O -0.537 6.537 10 C 0.514 3.486 11 N -0.802 5.802 12 O -0.553 6.553 13 C -0.139 4.139 14 C 0.107 3.893 15 N -0.607 5.607 16 C 0.534 3.466 17 O -0.546 6.546 18 C -0.128 4.128 19 S -0.148 6.148 20 C -0.544 4.544 21 H 0.081 0.919 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.997 3.003 25 H -0.257 1.257 26 H -0.274 1.274 27 H -0.274 1.274 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.040 0.960 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.418 0.582 34 H 0.423 0.577 35 H 0.422 0.578 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.532 6.435 22.971 29.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.046 3.954 3 H 0.111 0.889 4 C -0.168 4.168 5 C 0.046 3.954 6 H 0.117 0.883 7 N -0.338 5.338 8 C 0.288 3.712 9 O -0.414 6.414 10 C 0.292 3.708 11 N -0.368 5.368 12 O -0.430 6.430 13 C -0.179 4.179 14 C -0.016 4.016 15 N -0.342 5.342 16 C 0.322 3.678 17 O -0.423 6.423 18 C -0.279 4.279 19 S 0.079 5.921 20 C -0.692 4.692 21 H 0.099 0.901 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.819 3.181 25 H -0.181 1.181 26 H -0.200 1.200 27 H -0.199 1.199 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.124 0.876 32 H 0.091 0.909 33 H 0.256 0.744 34 H 0.255 0.745 35 H 0.257 0.743 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.593 6.961 22.824 28.505 hybrid contribution 1.526 -1.247 -0.763 2.113 sum 17.118 5.714 22.062 28.502 Atomic orbital electron populations 1.22024 0.93462 1.02155 1.01262 1.21303 0.95132 0.96020 0.82909 0.88946 1.22246 0.93285 1.02677 0.98578 1.21064 0.94217 0.97231 0.82923 0.88310 1.45858 1.12778 1.47371 1.27828 1.20175 0.83187 0.82246 0.85549 1.90778 1.56466 1.37001 1.57116 1.20080 0.83805 0.81661 0.85216 1.43447 1.12394 1.49298 1.31683 1.90833 1.57303 1.37616 1.57292 1.22268 1.02335 0.99620 0.93637 1.21895 0.78672 1.02066 0.98919 1.48181 1.07711 1.58180 1.20164 1.20008 0.85757 0.79171 0.82882 1.90752 1.18459 1.56595 1.76528 1.23447 1.03516 1.02661 0.98271 1.85516 1.13263 1.68854 1.24474 1.23217 0.97417 1.38262 1.10291 0.90103 1.26109 0.95799 0.97222 1.00028 1.70183 1.08917 1.44560 1.31083 0.84927 0.78634 0.77445 0.77079 1.18060 1.19984 1.19928 0.91092 0.92819 0.94109 0.87567 0.90906 0.74434 0.74486 0.74342 0.91290 0.89465 0.88990 0.88910 0.87793 0.87992 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 7.61 71.98 0.55 -2.85 16 2 C 0.15 3.03 3.48 44.97 0.16 3.19 16 3 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 4 C -0.13 -1.87 4.84 30.67 0.15 -1.72 16 5 C 0.15 2.10 2.42 45.02 0.11 2.21 16 6 H 0.10 1.42 7.58 -2.39 -0.02 1.41 16 7 N -0.69 -9.30 5.07 -443.74 -2.25 -11.55 16 8 C 0.51 7.84 7.85 87.27 0.69 8.53 16 9 O -0.54 -10.08 16.14 -3.22 -0.05 -10.14 16 10 C 0.51 7.34 8.16 87.27 0.71 8.05 16 11 N -0.80 -5.62 8.87 -174.49 -1.55 -7.17 16 12 O -0.55 -11.06 17.31 -3.25 -0.06 -11.12 16 13 C -0.14 -2.21 5.65 30.67 0.17 -2.04 16 14 C 0.11 1.99 6.35 86.36 0.55 2.54 16 15 N -0.61 -15.20 2.97 -795.01 -2.36 -17.56 16 16 C 0.53 19.21 7.52 87.66 0.66 19.87 16 17 O -0.55 -23.71 11.44 -3.03 -0.03 -23.75 16 18 C -0.13 -5.03 4.51 71.24 0.32 -4.71 16 19 S -0.15 -8.17 20.57 -56.49 -1.16 -9.33 16 20 C -0.54 -30.95 9.50 67.96 0.65 -30.31 16 21 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 22 C 0.01 0.75 5.49 84.86 0.47 1.21 16 23 N -0.91 -55.85 13.22 21.65 0.29 -55.56 16 24 Si 1.00 43.57 29.55 68.60 2.03 45.60 16 25 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.05 1.72 6.58 -2.39 -0.02 1.70 16 30 H 0.04 1.28 6.93 -2.39 -0.02 1.26 16 31 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.42 5.10 8.07 -92.71 -0.75 4.35 16 34 H 0.42 1.82 8.30 -92.71 -0.77 1.05 16 35 H 0.42 1.37 8.93 -92.71 -0.83 0.54 16 36 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.09 1.80 5.93 -2.38 -0.01 1.79 16 39 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.10 3.73 7.71 -2.39 -0.02 3.71 16 41 H 0.10 3.70 7.92 -2.40 -0.02 3.68 16 42 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -79.55 360.93 -1.23 -80.78 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -1.26 Total: 15.81 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 5.17 Total: 3.99 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -5.87 Total: -91.84 kcal Atomic # 8 Polarization: -44.86 SS G_CDS: -0.14 Total: -45.00 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -8.17 SS G_CDS: -1.16 Total: -9.33 kcal Total: -79.55 -1.23 -80.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075143585.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.261 kcal (2) G-P(sol) polarization free energy of solvation -79.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds