Wall clock time and date at job start Tue Mar 31 2020 07:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.58671 * 2 1 4 4 C 1.53189 * 109.58569 * 239.71465 * 2 1 3 5 5 C 1.53045 * 109.31029 * 185.43444 * 4 2 1 6 6 H 1.08998 * 109.46308 * 301.34533 * 5 4 2 7 7 N 1.46506 * 109.44799 * 181.37783 * 5 4 2 8 8 C 1.34780 * 119.99867 * 154.93979 * 7 5 4 9 9 O 1.21348 * 119.99548 * 0.02562 * 8 7 5 10 10 C 1.49442 * 119.99955 * 180.02562 * 8 7 5 11 11 N 1.34771 * 120.00148 * 180.02562 * 10 8 7 12 12 O 1.21352 * 119.99884 * 0.02562 * 10 8 7 13 13 C 1.53045 * 109.53724 * 61.36566 * 5 4 2 14 14 C 1.53186 * 109.31377 * 298.63461 * 13 5 4 15 15 N 1.46928 * 109.70229 * 120.35389 * 2 1 3 16 16 C 1.34771 * 120.63269 * 353.46670 * 15 2 1 17 17 O 1.21279 * 120.00285 * 5.07351 * 16 15 2 18 18 C 1.50699 * 120.00323 * 185.07978 * 16 15 2 19 19 S 1.81004 * 109.47490 * 179.97438 * 18 16 15 20 20 C 1.76202 * 99.99904 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00306 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99315 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00696 * 0.02562 * 22 20 19 24 24 Si 1.86810 * 119.99516 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46989 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47054 * 119.99930 * 24 22 20 27 27 H 1.48490 * 109.47037 * 240.00153 * 24 22 20 28 28 H 1.09006 * 109.46868 * 183.87722 * 1 2 3 29 29 H 1.09003 * 109.47223 * 303.87868 * 1 2 3 30 30 H 1.08997 * 109.47002 * 63.87909 * 1 2 3 31 31 H 1.08992 * 109.50164 * 65.48669 * 4 2 1 32 32 H 1.08999 * 109.52433 * 305.39987 * 4 2 1 33 33 H 0.96992 * 119.99900 * 334.93657 * 7 5 4 34 34 H 0.97000 * 120.00359 * 359.97438 * 11 10 8 35 35 H 0.97006 * 120.00651 * 180.02562 * 11 10 8 36 36 H 1.08998 * 109.49539 * 58.58725 * 13 5 4 37 37 H 1.08997 * 109.49534 * 178.68140 * 13 5 4 38 38 H 1.08998 * 109.58898 * 174.42433 * 14 13 5 39 39 H 1.09006 * 109.58554 * 294.84665 * 14 13 5 40 40 H 1.09000 * 109.46772 * 299.99805 * 18 16 15 41 41 H 1.09001 * 109.47276 * 59.99672 * 18 16 15 42 42 H 0.96995 * 120.00286 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2463 5 6 3.5678 -0.8434 -1.1728 6 1 4.0045 0.1528 -1.1021 7 7 4.0652 -1.5099 -2.3790 8 6 5.3281 -1.2927 -2.7967 9 8 6.0532 -0.5455 -2.1735 10 6 5.8353 -1.9721 -4.0273 11 7 7.0982 -1.7555 -4.4448 12 8 5.1099 -2.7190 -4.6508 13 6 3.9603 -1.6608 0.0600 14 6 3.4685 -0.9436 1.3211 15 7 2.0253 -0.6990 1.1936 16 6 1.1722 -1.1081 2.1534 17 8 -0.0237 -0.9833 1.9951 18 6 1.7041 -1.7207 3.4233 19 16 0.3219 -2.1629 4.5051 20 6 1.2066 -2.8366 5.8720 21 1 2.2857 -2.8736 5.8514 22 6 0.5164 -3.3186 6.9755 23 7 -0.7988 -3.2730 7.0008 24 14 1.4543 -4.0321 8.4250 25 1 2.9124 -3.9679 8.1511 26 1 1.1459 -3.2485 9.6482 27 1 1.0501 -5.4464 8.6282 28 1 -0.3633 -1.0254 0.0695 29 1 -0.3634 0.5729 0.8532 30 1 -0.3633 0.4524 -0.9227 31 1 1.7639 -0.1656 -2.1371 32 1 1.6050 -1.7246 -1.2926 33 1 3.4857 -2.1074 -2.8768 34 1 7.6780 -1.1582 -3.9467 35 1 7.4274 -2.1962 -5.2438 36 1 3.5037 -2.6488 0.0019 37 1 5.0449 -1.7625 0.0989 38 1 3.6576 -1.5683 2.1941 39 1 3.9920 0.0065 1.4288 40 1 2.2782 -2.6154 3.1824 41 1 2.3473 -1.0023 3.9316 42 1 -1.2810 -3.6095 7.7722 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075143586.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:07 Heat of formation + Delta-G solvation = -96.196773 kcal Electronic energy + Delta-G solvation = -25765.592180 eV Core-core repulsion = 21872.345427 eV Total energy + Delta-G solvation = -3893.246752 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.14721 -40.26578 -38.86733 -37.39721 -35.17395 -34.01592 -33.23192 -32.44009 -31.50707 -29.03810 -27.40210 -25.86664 -25.48464 -23.94754 -22.40330 -21.28758 -20.76968 -19.37310 -18.80248 -17.68461 -17.59380 -16.58552 -16.47497 -16.23067 -15.97547 -15.80492 -15.42901 -14.81587 -14.62211 -14.46272 -14.30687 -14.05129 -13.70325 -13.40371 -13.11229 -12.64210 -12.49163 -12.41809 -12.20095 -12.06854 -11.89530 -11.68941 -11.35014 -11.15983 -11.07959 -11.01024 -10.90569 -10.76135 -10.40016 -10.14238 -9.80440 -9.60590 -9.08379 -8.72482 -8.52106 -8.23332 -6.50948 -6.22895 -3.93218 0.96815 2.02994 2.77007 2.87795 3.02292 3.20795 3.24860 3.30197 3.40496 3.57051 4.10834 4.19151 4.30939 4.45324 4.67858 4.79210 4.90709 5.04927 5.12456 5.14194 5.20811 5.35625 5.48180 5.52679 5.54647 5.71420 5.72468 5.80394 5.84565 5.86845 5.94106 6.00840 6.11398 6.25851 6.41712 6.47221 6.80406 6.85645 7.33682 7.54162 7.55460 7.59103 8.34346 8.56593 9.22785 10.84537 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018951 B = 0.002475 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.110734 B =11309.019850 C =12298.495760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.152 3.848 3 H 0.071 0.929 4 C -0.140 4.140 5 C 0.144 3.856 6 H 0.096 0.904 7 N -0.693 5.693 8 C 0.506 3.494 9 O -0.518 6.518 10 C 0.513 3.487 11 N -0.823 5.823 12 O -0.521 6.521 13 C -0.146 4.146 14 C 0.113 3.887 15 N -0.620 5.620 16 C 0.536 3.464 17 O -0.507 6.507 18 C -0.154 4.154 19 S -0.061 6.061 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.040 0.960 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.413 0.587 34 H 0.415 0.585 35 H 0.411 0.589 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.639 5.808 -21.991 27.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.048 3.952 3 H 0.089 0.911 4 C -0.179 4.179 5 C 0.040 3.960 6 H 0.114 0.886 7 N -0.345 5.345 8 C 0.286 3.714 9 O -0.394 6.394 10 C 0.292 3.708 11 N -0.389 5.389 12 O -0.397 6.397 13 C -0.185 4.185 14 C -0.011 4.011 15 N -0.357 5.357 16 C 0.324 3.676 17 O -0.381 6.381 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.250 0.750 34 H 0.245 0.755 35 H 0.244 0.756 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.597 6.052 -21.938 26.012 hybrid contribution 2.381 -0.870 0.732 2.638 sum 14.978 5.181 -21.206 26.474 Atomic orbital electron populations 1.22221 0.91817 1.04544 1.00809 1.21117 0.96415 0.94649 0.82976 0.91106 1.22358 0.93301 1.02978 0.99266 1.21168 0.94510 0.97221 0.83081 0.88632 1.45927 1.12888 1.47559 1.28141 1.20052 0.83220 0.82582 0.85506 1.90785 1.55967 1.36120 1.56536 1.20173 0.83118 0.81937 0.85595 1.43536 1.13562 1.50122 1.31654 1.90837 1.56271 1.36093 1.56451 1.22345 1.02130 1.00042 0.94018 1.21657 0.80526 1.00744 0.98207 1.48197 1.07061 1.59623 1.20771 1.20286 0.86298 0.77150 0.83832 1.90750 1.15269 1.53604 1.78475 1.23622 1.06471 1.02916 0.97396 1.85366 1.05198 1.79054 1.13811 1.22895 0.94994 1.46749 1.03594 0.90927 1.24990 0.95030 0.95397 0.98176 1.70020 1.06097 1.43916 1.30240 0.86126 0.79610 0.78679 0.81140 1.19617 1.20568 1.20574 0.90549 0.90413 0.94172 0.89973 0.90316 0.75032 0.75493 0.75641 0.90682 0.90061 0.88643 0.91078 0.89423 0.89321 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 7.60 37.16 0.28 -1.50 16 2 C 0.15 1.69 3.49 -67.60 -0.24 1.46 16 3 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 4 C -0.14 -1.20 4.84 -26.61 -0.13 -1.33 16 5 C 0.14 1.22 2.42 -67.88 -0.16 1.05 16 6 H 0.10 0.86 7.58 -51.93 -0.39 0.47 16 7 N -0.69 -5.53 5.07 -54.19 -0.27 -5.81 16 8 C 0.51 4.48 7.85 -11.59 -0.09 4.39 16 9 O -0.52 -5.51 16.14 5.50 0.09 -5.42 16 10 C 0.51 4.15 8.16 -11.59 -0.09 4.06 16 11 N -0.82 -3.79 8.87 30.90 0.27 -3.52 16 12 O -0.52 -5.59 17.31 5.49 0.10 -5.50 16 13 C -0.15 -1.34 5.65 -26.61 -0.15 -1.49 16 14 C 0.11 1.18 6.33 -3.71 -0.02 1.16 16 15 N -0.62 -8.16 2.97 -165.23 -0.49 -8.65 16 16 C 0.54 9.57 7.63 -10.99 -0.08 9.49 16 17 O -0.51 -10.56 11.28 5.56 0.06 -10.50 16 18 C -0.15 -3.02 4.56 36.00 0.16 -2.85 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 20 C -0.53 -15.03 9.50 30.94 0.29 -14.74 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 24 Si 0.92 21.28 29.55 -169.99 -5.02 16.25 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H 0.08 1.18 6.74 -51.93 -0.35 0.83 16 29 H 0.08 1.21 6.77 -51.93 -0.35 0.86 16 30 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.41 2.97 8.07 -40.82 -0.33 2.64 16 34 H 0.41 1.39 8.30 -40.82 -0.34 1.05 16 35 H 0.41 1.12 8.93 -40.82 -0.36 0.76 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 1.03 5.96 -51.93 -0.31 0.73 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 1.60 7.48 -51.92 -0.39 1.21 16 41 H 0.09 1.63 8.11 -51.91 -0.42 1.21 16 42 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 360.87 15.07 5.44 5.44 Total: -1.00 -35.40 360.87 -7.39 -42.79 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.75 Total: 2.32 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -0.33 Total: 1.66 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.24 Total: -43.20 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: 0.25 Total: -21.42 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.40 -7.39 -42.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075143586.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.407 kcal (2) G-P(sol) polarization free energy of solvation -35.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds